Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400118.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3335.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1914
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.20

Warning! 885 characters in sequence are not A, C, G, or T


Found at i:1880 original size:172 final size:162

Alignment explanation


    Indices: 1479--1914  Score: 471
    Period size: 162  Copynumber: 2.6  Consensus size: 162

       1469 NNNNNNNNNN

                                         *         *   *                  *  
       1479 AACTTAAAACTAATTATGAGATTAAAAAACTATTTAAAGTGAGAAATAAGGCTTTCAAAGGCTTG
          1 AACTTAAAACTAATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATG

               *                          **                                *
       1544 GGTTACTATAAATGGACTTTTCTTGCCAATAAATATCTTTTTACTTATGTTTCTAGAGGCAGACT
         66 GGTGACTATAAATGGACTTTTCTTGCCAATGGATATCTTTTTACTTATGTTTCTAGAGGCAGACA

              *  * *    *                   
       1609 TTGAATTGTAATTTGTTTTAATAAAAAAATAT
        131 TTCAACTATAATCTGTTTTAATAAAAAAATAT

              *                  *   *         *              *     *    *   
       1641 AAATTAAAA-TCAATTATGAGTTTATAAAATTATTGAAAGCGAGTAATAAAGCTTTTAAAGTCAT
          1 AACTTAAAACT-AATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCAT

                          *         *                  **                 *  
       1705 GGGTGACTATAAATAGACTTTTCTCGCCAATGGATATCTTTTTTTTTAATGTTTCTTA-AGGTAG
         65 GGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCTTTTTACTT-ATGTTTC-TAGAGGCAG

                                                  * * * 
       1769 ACATTCAACTATAATCTGTTTTAATAAAANNNNNNNNNNAGTTT
        128 ACATTCAACTATAATCTGTTTTAATAAAA---------AAATAT

                                                   *                *        
       1813 AACTTAAAACTAATTATGAGATTAAAAAATTATTTAAAGGGAGTAATAAGGCTTTCGAAGGCATG
          1 AACTTAAAACTAATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATG

                    *               *            
       1878 GGTGACTACAAATGGACTTTTCTTACCAATGGATATC
         66 GGTGACTATAAATGGACTTTTCTTGCCAATGGATATC


Statistics
Matches: 221,  Mismatches: 40, Indels: 16
        0.80            0.14        0.06

Matches are distributed among these distances:
 161    1  0.00
 162   91  0.41
 163   36  0.16
 164    2  0.01
 172   90  0.41
 173    1  0.00

ACGTcount: A:0.37, C:0.10, G:0.15, T:0.36


Consensus pattern (162 bp):   
AACTTAAAACTAATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATG
GGTGACTATAAATGGACTTTTCTTGCCAATGGATATCTTTTTACTTATGTTTCTAGAGGCAGACA
TTCAACTATAATCTGTTTTAATAAAAAAATAT
Done.