Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400140.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3355.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2205
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.24

Warning! 781 characters in sequence are not A, C, G, or T


Found at i:2116 original size:173 final size:171

Alignment explanation


    Indices: 1828--2205  Score: 445
    Period size: 173  Copynumber: 2.2  Consensus size: 171

       1818 NNNNNNNNNN

                      *         *                               **           
       1828 AGTTAAAACAAACTATAATTCAATGTCTACCTTGAGAAATGTAAAGAAAAAGCTTTCATTGGCAA
          1 AGTTAAAACAGACTATAATTGAATGTCTACCTTGAGAAATGTAAAGAAAAAGAATTCATTGGCAA

                                                                             
       1893 GAAAAGTCCATTTATAGTCACCCGTTCCTTTAAAAGCCTTAGTACTCACTTTAAATGGTTTTATA
         66 GAAAAGTCCATTTATAGTCACCCGTTCCTTTAAAAGCCTTAGTACTCACTTTAAATGGTTTTATA

            *            *                   *        
       1958 TTCACAAAATTGATTTA-AGTTTGAATTCCTTGTACATTTTT
        131 ATCACAAAATTGAATTACA-TTTGAATTCCTTGCACATTTTT

            *           *                 *        *   *                     
       1999 GGTTAAAACAGATTATAATTGAATGTCTACTTTGAGCAATTGTGAAGAAAAAGGAATTCATTGGC
          1 AGTTAAAACAGACTATAATTGAATGTCTACCTTGAG-AAATGTAAAGAAAAA-GAATTCATTGGC

                                             ********** *                    
       2064 AAGAAAAGTCCATTTATAGTCACCC-TTACCTTNNNNNNNNNNATTACTCACTTTAAATGGTTTT
         64 AAGAAAAGTCCATTTATAGTCACCCGTT-CCTTTAAAAGCCTTAGTACTCACTTTAAATGGTTTT

                  *                        *     *      
       2128 ATAATCTCAAAATTGAATTACATTTGAATTCTTTGCATATTTTT
        128 ATAATCACAAAATTGAATTACATTTGAATTCCTTGCACATTTTT

                    *      *           *      
       2172 AGTTAAAATAGACTAGAATTGAATGTCCACCTTG
          1 AGTTAAAACAGACTATAATTGAATGTCTACCTTG


Statistics
Matches: 171,  Mismatches: 32, Indels: 6
        0.82            0.15        0.03

Matches are distributed among these distances:
 171   31  0.18
 172   15  0.09
 173  124  0.73
 174    1  0.01

ACGTcount: A:0.35, C:0.14, G:0.13, T:0.35


Consensus pattern (171 bp):   
AGTTAAAACAGACTATAATTGAATGTCTACCTTGAGAAATGTAAAGAAAAAGAATTCATTGGCAA
GAAAAGTCCATTTATAGTCACCCGTTCCTTTAAAAGCCTTAGTACTCACTTTAAATGGTTTTATA
ATCACAAAATTGAATTACATTTGAATTCCTTGCACATTTTT
Done.