Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400142.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3357.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.21

Warning! 434 characters in sequence are not A, C, G, or T


Found at i:441 original size:24 final size:26

Alignment explanation


    Indices: 392--453  Score: 74
    Period size: 25  Copynumber: 2.5  Consensus size: 26

        382 AAATTAAATT

                              **  *   
        392 AATAAATTAAAATTAGTTTGT-CAAA
          1 AATAAATTAAAATTAGTTCATAAAAA

                                      
        417 AATAAATT-AAATTAGTTCATAAAAA
          1 AATAAATTAAAATTAGTTCATAAAAA

                   *    
        442 AATAAATCAAAA
          1 AATAAATTAAAA

        454 CTTGATTCCT


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  24   10  0.32
  25   18  0.58
  26    3  0.10

ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31


Consensus pattern (26 bp):   
AATAAATTAAAATTAGTTCATAAAAA

Done.