Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400152.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3368.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2824
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.18

Warning! 1335 characters in sequence are not A, C, G, or T


Found at i:680 original size:171 final size:171

Alignment explanation


    Indices: 346--722  Score: 433
    Period size: 171  Copynumber: 2.2  Consensus size: 171

        336 NNNATTCAAG

                   *                                   *         *  *        
        346 TTAAAATCAATTATTAGATTATAAAACTATTTAAAGCAAGTAATAAGATCTTTGAAGGAATGAGA
          1 TTAAAATTAATTATTAGATTATAAAACTATTTAAAGCAAGTAAAAAGATCTTTAAAAGAATGAGA

                                 *              *         *                  
        411 GGCTATAAATAGACATTTCTTGCCAATGAATGCTTTTTTCTTCACTTTTCTCAAGGCAAAAAATC
         66 GGCTATAAATAGACATTTCTTACCAATGAATGCTTTATTCTTCACTGTTCTCAAGGCAAAAAATC

                    *     *   **      *               
        476 AATTAGAGTCTGTTTTAATGAAAAATGTAAAAAAATT-GAAC
        131 AATTAGAGCCTGTTCTAACAAAAAATATAAAAAAATTCG-AC

                          *  * *                  *                      *   
        517 TTAAAATTAATTATGAGCTCATAAAACTATTTAGAA-CGAGTAAAAAGA-CTGTTAAAAGACTGA
          1 TTAAAATTAATTATTAGATTATAAAACTATTTA-AAGCAAGTAAAAAGATCT-TTAAAAGAATGA

                            *   *   *         *                    *      * *
        580 GAGGCTATAAATAGACTTTTGTTATCAATGAATGGTTTATTCTTCA-TGGTTCTCGAGG-AAGAC
         64 GAGGCTATAAATAGACATTTCTTACCAATGAATGCTTTATTCTTCACT-GTTCTCAAGGCAAAAA

                     *                                   
        643 ATCCAATTATAGCCTGTTCTAACAAAAAATATAAAAAAATTCGAC
        128 AT-CAATTAGAGCCTGTTCTAACAAAAAATATAAAAAAATTCGAC

             *                                  
        688 TAAAAATTAATTATTAGATTAT-AAACTATTTAAAG
          1 TTAAAATTAATTATTAGATTATAAAACTATTTAAAG

        723 TGAGTAATAA


Statistics
Matches: 171,  Mismatches: 29, Indels: 13
        0.80            0.14        0.06

Matches are distributed among these distances:
 169    2  0.01
 170   18  0.11
 171  148  0.87
 172    3  0.02

ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33


Consensus pattern (171 bp):   
TTAAAATTAATTATTAGATTATAAAACTATTTAAAGCAAGTAAAAAGATCTTTAAAAGAATGAGA
GGCTATAAATAGACATTTCTTACCAATGAATGCTTTATTCTTCACTGTTCTCAAGGCAAAAAATC
AATTAGAGCCTGTTCTAACAAAAAATATAAAAAAATTCGAC
Done.