Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400166.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3382.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2073
ACGTcount: A:0.13, C:0.08, G:0.10, T:0.20

Warning! 1026 characters in sequence are not A, C, G, or T


Found at i:107 original size:59 final size:59

Alignment explanation


    Indices: 1--113  Score: 190
    Period size: 59  Copynumber: 1.9  Consensus size: 59

                                                     **      *         
          1 AGCATCTTCTTGTGGCAGACAAGGTTGCTTTCGGCTACTTTTGTCTTCTCTTGGTAGAA
          1 AGCATCTTCTTGTGGCAGACAAGGTTGCTTTCGGCTACTTTCATCTTCTATTGGTAGAA

                       *                                          
         60 AGCATCTTCTTTTGGCAGACAAGGTTGCTTTCGGCTACTTTCATCTTCTATTGG
          1 AGCATCTTCTTGTGGCAGACAAGGTTGCTTTCGGCTACTTTCATCTTCTATTGG

        114 CAAAAGCNNN


Statistics
Matches: 50,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  59   50  1.00

ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40


Consensus pattern (59 bp):   
AGCATCTTCTTGTGGCAGACAAGGTTGCTTTCGGCTACTTTCATCTTCTATTGGTAGAA
Done.