Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400175.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3391.1, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1780
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.18

Warning! 923 characters in sequence are not A, C, G, or T


Found at i:301 original size:172 final size:170

Alignment explanation


    Indices: 13--623  Score: 897
    Period size: 171  Copynumber: 3.6  Consensus size: 170

          3 TGTTTGGCTC

                   *          *              *                 *             
         13 GAGAAACGTGAAGAAACATGCATTTATTGACAAGAAAAGTCCATTTAGAGTTACCCATTCTTTCA
          1 GAGAAACATGAAGAAACAAGCATTTATTGACAAAAAAAGTCCATTTAGAGTCACCCATTCTTTCA

                                             *   *                           
         78 AAAGGCTTATTACTCGCTTTAAATAGTTTTATACTCTAATAATTGATTTTAAGTTGAATTTTTTT
         66 AAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT

                                                     
        143 ACATTTTTGATTAAAACATACTATAATTGAATGTTTACCTT
        131 ACATTTTTGATTAAAACATACTATAATTGAATGTTTA-CTT

                                                                         *   
        184 GAGAAACATGAAGAAACAAGCATTTATTGACAAGAAAAAGTCCATTTAGAGTCACCCATTCATTC
          1 GAGAAACATGAAGAAACAAGCATTTATTGACAA-AAAAAGTCCATTTAGAGTCACCCATTCTTTC

            *               *         *                  *          *     *  
        249 GAAAGGCTTATTACTCACTTTAAATAATTTTATAATCTCATAATTCATTTTAAGTTAAATTTGTT
         65 AAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT

              *                             *   *      
        314 TATATTTTTTG-TTAAAACATACTATAATTGATTGTCTACTAT
        130 TACA-TTTTTGATTAAAACATACTATAATTGAATGTTTACT-T

                                              *       *                      
        356 GAGAAACATGACA-AAACAAGCATTTATTGACAATAAAAGTCTATTTAGAGTCACCCATTCTTTC
          1 GAGAAACATGA-AGAAACAAGCATTTATTGACAAAAAAAGTCCATTTAGAGTCACCCATTCTTTC

                           *                                              *  
        420 AAAAGGCTTATTACTTGCTTTAAATAGTTTTATAATCTC-TCAATTGATTTTAAGTTGAATTCTT
         65 AAAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTT

                                       *               *
        484 TTACATTTTTGATTAAAACATACTATAGTTGAATGTCTGTA-TC
        129 TTACATTTTTGATTAAAACATACTATAATTGAATGT-T-TACTT

                                                      *                      
        527 GAGAAACATGAAGAAACAAGCATTTATTGACAAAAAAAGTCCGTTTAGAGTCACCCATTCTTTCA
          1 GAGAAACATGAAGAAACAAGCATTTATTGACAAAAAAAGTCCATTTAGAGTCACCCATTCTTTCA

             *              *               
        592 ACAGGCTTATTACTCGTTTTAAATAGTTTTAT
         66 AAAGGCTTATTACTCGCTTTAAATAGTTTTAT

        624 NNNNNNNNNN


Statistics
Matches: 393,  Mismatches: 38, Indels: 18
        0.88            0.08        0.04

Matches are distributed among these distances:
 170    8  0.02
 171  230  0.59
 172  146  0.37
 173    9  0.02

ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Consensus pattern (170 bp):   
GAGAAACATGAAGAAACAAGCATTTATTGACAAAAAAAGTCCATTTAGAGTCACCCATTCTTTCA
AAAGGCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTT
ACATTTTTGATTAAAACATACTATAATTGAATGTTTACTT

Done.