Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400180.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3396.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2482
ACGTcount: A:0.21, C:0.09, G:0.07, T:0.23

Warning! 993 characters in sequence are not A, C, G, or T


Found at i:940 original size:168 final size:168

Alignment explanation


    Indices: 518--959  Score: 430
    Period size: 168  Copynumber: 2.6  Consensus size: 168

        508 GTTGAGGTTG

                                                   *          *              
        518 TTTACATGTTTCATTAAAACAGACTATAATTGAATGTCCACCTCAAGAAATGTGAAGAAAAACA-
          1 TTTACAT-TTTCATTAAAACAGACTATAATTGAATGTCCGCCT-AAGAAAAGTGAAGAAAAA-AG

                    *                 *    *    *   *                   *    
        582 CATTCATTGGCAAGAAAAGTCTATTTCTAG-TTACCTATTTCTTCAAAAGTCTTATTACTTGCTT
         63 CATTCATTTGCAAGAAAAGTCTATTTATAGCCT-CCCATTCCTTCAAAAGTCTTATTACTCGCTT

             *            *        **     * *  *      
        646 TCAATAGTTTATAATCTAATAATTGATTTTGAGCTGAATTTT
        127 TAAATAGTTTATAAGCTAATAATAAATTTTAAACTCAATTTT

                       **  **     *               *           *        *     
        688 TTTACATTTTTGGTTGGAACAGGCTATAATTGAATGTCTGCCTTAAGAACCA-TGAAGAGAAAAG
          1 TTTACA-TTTTCATTAAAACAGACTATAATTGAATGTCCGCC-TAAGAA-AAGTGAAGAAAAAAG

                       *  *                                *      *          
        752 CATTCA-TTGATAACAAAAGTCTATTTATAGCCTCCCA-TCCTTCAACAG-CTTTTTACTCG-TT
         63 CATTCATTTG-CAAGAAAAGTCTATTTATAGCCTCCCATTCCTTCAAAAGTCTTATTACTCGCTT

                  *            *               *        
        813 CTAAATCGTTTTATAAGCTCATAATAAATTTTAAATTCAATTTT
        127 -TAAATAG-TTTATAAGCTAATAATAAATTTTAAACTCAATTTT

                                *                      *                   * 
        857 TTTACATTTTCATTAAAACAAACTATAATTGAATGTCCGCCATGAGAAAAGTGAAGAAAAAAGTA
          1 TTTACATTTTCATTAAAACAGACTATAATTGAATGTCCGCC-TAAGAAAAGTGAAGAAAAAAGCA

                                            *     
        922 TTCATTTGCAAGAAAAGTCTATTTATAGCCTCTCATTC
         65 TTCATTTGCAAGAAAAGTCTATTTATAGCCTCCCATTC

        960 NNNNNNNNNN


Statistics
Matches: 216,  Mismatches: 45, Indels: 23
        0.76            0.16        0.08

Matches are distributed among these distances:
 167    3  0.01
 168   87  0.40
 169   50  0.23
 170   73  0.34
 171    3  0.01

ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36


Consensus pattern (168 bp):   
TTTACATTTTCATTAAAACAGACTATAATTGAATGTCCGCCTAAGAAAAGTGAAGAAAAAAGCAT
TCATTTGCAAGAAAAGTCTATTTATAGCCTCCCATTCCTTCAAAAGTCTTATTACTCGCTTTAAA
TAGTTTATAAGCTAATAATAAATTTTAAACTCAATTTT
Done.