Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400191.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3405.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.34

Warning! 101 characters in sequence are not A, C, G, or T


Found at i:545 original size:171 final size:171

Alignment explanation


    Indices: 208--1356  Score: 889
    Period size: 171  Copynumber: 6.7  Consensus size: 171

        198 ATAAATAGGC

                     *       * **                  *                       * 
        208 TTTTCTTCACGTTTCTCAAAATAGATATTCAATTATAATATGTTTTAACCAAAAATGTAAAAACA
          1 TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAA

                                      *      *                               
        273 TTTAACTTAAAATCAATTATGAGATTGTAAAACTATTTAAAGCGTA-TAATAAGGCTTTTGAAGG
         66 TTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTTGAAGG

                           **********     *       *   
        337 CATGGGTGACTATAANNNNNNNNNNCTTGCTAATGAATAGCT
        130 CATGGGTGACTATAAATAGGCTTTTCTTGCGAATGAATGGCT

                            **           *           *                       
        379 TTTTCTTCATGTTTCTTTAGGTAGATATTTAATTATAATCTATTTTAACCAAAAATG-AGAAAAA
          1 TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTA-AAAAA

                        * * *                                   * *          
        443 ATTTAACTTAAAGTTAGTTATGAGATTATAAAACCATTTAAAGCGAGTAATATGTCTTTTGAAGG
         65 ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG

                *        * *                      **  
        508 CATGAGTGACTATTATTAGGCTTTTCTTGCGAATGAATAACT
        130 CATGGGTGACTATAAATAGGCTTTTCTTGCGAATGAATGGCT

                                      *          *                *          
        550 TTTTCTTCATGTTTCTCGAGG-ATGACATTCAATTATTATCTGTTTTAACCAAATATGTAAAAAA
          1 TTTTCTTCATGTTTCTCGAGGTA-GATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAA

               *                   ****************     *              *     
        614 ATTCAACTTAAAATCAATTATGANNNNNNNNNNNNNNNNAAAGCAAGTAATAAGGCTTTCGAAGG
         65 ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG

                                       * *          * *
        679 CATGGGTGACTATAAAT-GGACTTTTCCTACGAATGAATGACC
        130 CATGGGTGACTATAAATAGG-CTTTTCTTGCGAATGAATGGCT

                             *                  *          *       *         
        721 TTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATTATCTGTTTTATCCAAAAAAGTAAAAAAA
          1 TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAA

                                                 ************************    
        786 TTTAACTTAAAATCAATTATGAGATTATAAAACCATTNNNNNNNNNNNNNNNNNNNNNNNNAGGC
         66 TTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGC

                                       * *           
        851 ATGGGTGACTATAAATAGGCTTTTCTTACTAATGAATGGCT
        131 ATGGGTGACTATAAATAGGCTTTTCTTGCGAATGAATGGCT

            *                ** *** *            *             *             
        892 CTTTCTTCACT-TTTCTTAAAACAAATATTCAATTATTATCTGTTTT-ACATAAAAATGTAAAAA
          1 TTTTCTTCA-TGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAAC-CAAAAATGT-AAAA

               *            *                 *** * *                        
        955 AAAATTAACTTAAAATGAATTATGAGATTATAAAGGAAATGAAAGCGAGTAATAAGGCTTTTGAA
         63 AAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA

            *          *          *          *         * 
       1020 AGCATGGGTGAGTATAAAT-GTACTTTTCTTGCAAATGAATGGTT
        128 GGCATGGGTGACTATAAATAG-GCTTTTCTTGCGAATGAATGGCT

                    * *     * *      *                                   *   
       1064 TTTTCTTCTTATTTCTTGGGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAACAAA
          1 TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAA

              *     *                        *                         * *   
       1129 TTCAACTTCAAATCAATTATG-GCATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTGGTAGG
         66 TTTAACTTAAAATCAATTATGAG-ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG

                     **                    *   *       
       1193 CATGGGTGAGAATAAAT-GGACTTTTCTTGCCAATAAATGGCT
        130 CATGGGTGACTATAAATAGG-CTTTTCTTGCGAATGAATGGCT

             *       **                  *           *            *          
       1235 TATTCTTCACCTTTCTCGAGGTAGATATTAAATTATAATCTATTTTAACCAAAAGT-TAAAAAAA
          1 TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAA

             **     *  *   *                       *                   
       1299 TACAACTTCAAGTCAGTTATGAGATTATAAAACCATTTAGAGCGAGTAATAAGG-TTTT
         66 TTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT

       1357 NNNNNNNNNN


Statistics
Matches: 755,  Mismatches: 207, Indels: 34
        0.76            0.21        0.03

Matches are distributed among these distances:
 169    3  0.00
 170   61  0.08
 171  567  0.75
 172  122  0.16
 173    2  0.00

ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35


Consensus pattern (171 bp):   
TTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAA
TTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGC
ATGGGTGACTATAAATAGGCTTTTCTTGCGAATGAATGGCT

Done.