Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397548.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1143.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8499
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.25

Warning! 1669 characters in sequence are not A, C, G, or T


Found at i:6050 original size:36 final size:35

Alignment explanation


    Indices: 5987--6078  Score: 94
    Period size: 36  Copynumber: 2.6  Consensus size: 35

       5977 AGTCCTTAAG

                       *          *     *    *  
       5987 AAGCCCAATTACCTTAATTAAATAATTTGATCAGTT
          1 AAGCCCAA-TAACTTAATTAAAAAATTTAATCAATT

                          *                     
       6023 AAGCCCAATAACTTGATTAAACAAATTTAATCAATT
          1 AAGCCCAATAACTTAATTAAA-AAATTTAATCAATT

             *   *      *       
       6059 AGGCCTAATAACATAATTAA
          1 AAGCCCAATAACTTAATTAA

       6079 NNNNNNNNNN


Statistics
Matches: 46,  Mismatches: 9, Indels: 2
        0.81            0.16        0.04

Matches are distributed among these distances:
  35   11  0.24
  36   35  0.76

ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32


Consensus pattern (35 bp):   
AAGCCCAATAACTTAATTAAAAAATTTAATCAATT
Done.