Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400208.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3420.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3926
ACGTcount: A:0.23, C:0.08, G:0.09, T:0.22

Warning! 1475 characters in sequence are not A, C, G, or T


Found at i:1576 original size:168 final size:169

Alignment explanation


    Indices: 1286--1590  Score: 382
    Period size: 168  Copynumber: 1.8  Consensus size: 169

       1276 NNNNNNNNNG

                *              *         *              *        *           
       1286 ATTATAAAACCATTTAAAGTGAGAATAAGGCTTTTGAAGGAATGGGTGACTATCAATGGACTTGT
          1 ATTACAAAACCATTTAAAGCGAGAATAAGACTTTTGAAGGAATGAGTGACTATAAATGGACTTGT

                                             *                               
       1351 CTTCCCAATGAATGCCTTTTCATAACGTTTCTCGAGATAAGCATTCAATTATAGTCTG-TTTAAC
         66 CTTCCCAATGAATGCCTTTTCATAACGTTTCTCAAGATAAGCATTCAATTATAGTCTGTTTTAAC

                                                   
       1415 AAAAAATATAAAAAAATTTAACTTAAAATCAATTATGGC
        131 AAAAAATATAAAAAAATTTAACTTAAAATCAATTATGGC

                            *              *     *   *                      *
       1454 ATTACAAAACCATTTAGAGCGAGTAATAAGATTTTTGGAGGTATGAGTGACTA-AAATGGACTTT
          1 ATTACAAAACCATTTAAAGCGAG-AATAAGACTTTTGAAGGAATGAGTGACTATAAATGGACTTG

                *           **     * ***          *             *            
       1518 TCTTGCCAATGAATGTTTTTTTCTTCGTGTTTCTCAAGGT-AGCATTCAATTCTAGTCTGTTTTA
         65 TCTTCCCAATGAATG-CCTTTTCATAACGTTTCTCAAGATAAGCATTCAATTATAGTCTGTTTTA

              *      
       1582 ACCAAAAAT
        129 ACAAAAAAT

       1591 GTACAAAGAA


Statistics
Matches: 113,  Mismatches: 21, Indels: 5
        0.81            0.15        0.04

Matches are distributed among these distances:
 168   61  0.54
 169   52  0.46

ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Consensus pattern (169 bp):   
ATTACAAAACCATTTAAAGCGAGAATAAGACTTTTGAAGGAATGAGTGACTATAAATGGACTTGT
CTTCCCAATGAATGCCTTTTCATAACGTTTCTCAAGATAAGCATTCAATTATAGTCTGTTTTAAC
AAAAAATATAAAAAAATTTAACTTAAAATCAATTATGGC
Done.