Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397550.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1701.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8402
ACGTcount: A:0.27, C:0.09, G:0.10, T:0.27
Warning! 2272 characters in sequence are not A, C, G, or T
Found at i:1112 original size:135 final size:135
Alignment explanation
Indices: 866--1125 Score: 344
Period size: 135 Copynumber: 1.9 Consensus size: 135
856 NNNNNNNNNG
* *
866 CTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGTCAAACATTAAA
1 CTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCTTCACATTTCTCGAATCAAACATTAAA
* * * * ***
931 TTATAGCCTGTTTTAATGAAAAATGTAAAAATATTTAACTTCAAATCAATTATGAGATTATAAAG
66 TTATAGCCTGTTTGAATCAAAAATGTAAAAAAATTCAACCGAAAATCAATTATGAGATTATAAAG
996 GGTGA
131 GGTGA
* ** * *
1001 CTATAAAT-GAACTTTTCTTGTCAATGAATACTTTTTTCTTCAGGTTTCTCGAAAT-AAATATTC
1 CTATAAATAG-ACTTTTCTTGCCAATGAATACTTTTTTCTTCACATTTCTCG-AATCAAACATTA
* *
1064 AATTATAGTCTGTTTGAATCATAAATGTAAAAAAATTCAACCGAAAATCAATTATGAGATTA
64 AATTATAGCCTGTTTGAATCAAAAATGTAAAAAAATTCAACCGAAAATCAATTATGAGATTA
1126 GAAAACCTTT
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
134 1 0.01
135 104 0.97
136 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (135 bp):
CTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCTTCACATTTCTCGAATCAAACATTAAA
TTATAGCCTGTTTGAATCAAAAATGTAAAAAAATTCAACCGAAAATCAATTATGAGATTATAAAG
GGTGA
Found at i:1543 original size:171 final size:170
Alignment explanation
Indices: 1254--3516 Score: 1727
Period size: 171 Copynumber: 13.3 Consensus size: 170
1244 TTGTTTTAAT
* * **********
1254 AAAAATTTAACTTAAAATCAATTATTAGATTATAAAACCATTTAAAGCGAGTANNNNNNNNNNTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * ** * *
1319 AAGTAATGAGAGGTTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTGAA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTG-A
* * * * *
1384 GACAAACATTCAATTATAGCCTCTTTTAACGAAAAATGTAA
130 GATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* * * * * *
1425 AAATATTTAACTTAAAATGAATTATGAGATTATAAAACCATATGAAGCGAGTAATATGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * ** *
1490 AAGGAAAGGGTGACTACAAATAGACTTTTCTTGTCAATGAATATTTTTTTCTTCACGTTTCTCTA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCT-GA
* * *
1555 GATAAATATTCGATTATAGTCTGTTTGAATAAAAAATGTAA
130 GATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* *
1596 AAAAATTCAA-TCTAAAATCAATTATGAGATTAGAAAACCATTGT-AAGCGAGTAATAAAGCTTT
1 AAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATT-TAAAGCGAGTAATAAGGCTTT
* * * * *
1659 TGAAGGATTGGGTGACTGTAAATCA-ACTTTTCTTGTCGATGAATCCTCTTTTCTTCACGTTTCT
64 TGAAGGAATGGGTGACTATAAAT-AGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTC-
* * * * *
1723 TAAGATAGATATTCAATTATAGGCTGTTTTAATTAAAAATATAA
127 TGAGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* * * * *
1767 AAAATTTCAACTTAAAATCAATTATTAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * ** *
1832 AAGGAATGAGAGGCTATAAATAGACTTTTCTTCCCAATGAATGCTTTTTTCTTCACATTTCTCGA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCT-GA
* * **
1897 G-TCAAACATTCAATTATAGCCTGTTTTAACAAAAAATGTAA
130 GAT-AAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* *
1938 AAAAATTCAACTTAAAATCAATTATTAGATTATAAAACCATTTAAAGCGAGTAATAAGGGTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * *
2003 AAGGAATGAGAGGCTCTAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTCGA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCT-GA
* * *
2068 GAAAAATATTCAATTATAGTCTGTTTGAATCAAAAACT-TAA
130 GATAAATATTCAATTATAGTCTGTTTTAATGAAAAA-TGTAA
* * * ** *****
2109 AAAAATTCAA-TCTAAAATCAAATATGGGATTAGAAAACCATTGGAAGCGAGTAATAAGGNNNNN
1 AAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
***** * * * * * *
2173 NNNNNAATGGGTGACTATAAATTGACTTTTCTTGTCGATGAATGCTCTTTTCTTCATGTTTTTTA
65 GAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACG-TTTCTG
* * * *
2238 AGATAGATATTCTATTATAGGCTGTTTTAATTAAAAATGTAA
129 AGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* ********** * *
2280 AAAATTTCAACTTAAAATCAATTNNNNNNNNNNAAAACTATTTAAAGTGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * * * * * *
2345 AAGGAATAGGAGGCTGTAAACT-GACTTTTCTTGCCAATGAATGATGTTTTCTTCATGCTTCTCA
66 AAGGAATGGGTGACTATAAA-TAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCT-G
** ********** **
2409 AGGCANNNNNNNNNNTATAGTCTGTTTTAATGAAAAATACAA
129 AGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* * * * ** * *
2451 ACAAATTGAGCTTAAAATCAAGTATGAGATTATAAAACCATTTAAAGTTACTAATAAGGCTTCTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
2516 AAGGAATGGGTGACTATAAATGGACTTTTCTT-TATAATGAATACTTTCTCCTTCATGTTTCTTG
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGT-CAATGAATGCTTTTTTCTTCACGTTTC-TG
* * * * **********
2580 AGATAGACATTTAATTATTA-TTTG-TTTNNNNNNNNNNGTAA
129 AGATAAATATTCAATTA-TAGTCTGTTTTAATGAAAAATGTAA
* * *
2621 AAACATTCAACTTAAAATCAATTACT-AGATTATAAAACCATTTAAAGCAAGTAATAATGCTTTT
1 AAAAATTCAACTTAAAATCAATTA-TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * ** *
2685 AAAGGAATGAGAGGCTATAAATAGACTTTTCTTATAAATGAATGCTTTTTTCTTCATATTTCACG
65 GAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTC-TG
** * * * ***
2750 AGGCAAACATTCAATTATAGCCTGTTTTAACGAAAAATGNNN
129 AGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
******* ** * * *
2792 NNNNNNNCAACTTAAAATCAATTATGAGATTATAAAACCATTTGGAGCGAGTAATATGACTTTCG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * *
2857 AAGGAAAGGGTGACTATAAATGGACTTTTCTTGTTAATGAATGATTTTTTCTTCACGTTTCTCGA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCT-GA
* * *
2922 GATAAATATTCGATTATAGTCTGTTTGAATAAAAAATGTAA
130 GATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* * ** *
2963 AAAAATTCAACCTAAAATCAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGGCCTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * *
3028 AAGGAAT-GGTGACTATAAATCGACTTTTCTTGTCGATGAATGCTCTTTTCTTCACGTTTCTTCA
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTC-TGA
* * * *
3092 GATAAATATTCATTTATAGGCTGTTTTAATTAATAATGTAA
130 GATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* * * * ********** *
3133 AACATTTTAACTTAAAATCAATTATTAGATTANNNNNNNNNNTAAAGTGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * * * *
3198 AAGCAATGGGAGGCTGTAAATAAACTTTTCTTGCCAATGAATGTTTTTTTCTTCATGCTTTTCAT
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCA--CGTTTC-T
* * *
3263 G-G-CAAACATTCAATTATAGTCTGTTTTAATGAGAAATGTAA
128 GAGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
* ** *
3304 AAAAATTCAGCTTAAAATCAAGGATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
********** * * * *
3369 AAGGANNNNNNNNNNATAAATGGACTTTTCTT-TATAATGAATAC-TTTTTCTTTCATGTTTCTC
66 AAGGAATGGGTGACTATAAATAGACTTTTCTTGT-CAATGAATGCTTTTTTC-TTCACGTTTCT-
* ** * * * * *
3432 AAGATTGACATTTAATTATTGTTTGTTTTAAT-AAAAATATAA
128 GAGATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
*
3474 AAAAATT-AACTTAAAATCAATTATTAGATTATAAAACCATTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
3517 NNNNNNNNNN
Statistics
Matches: 1622, Mismatches: 433, Indels: 76
0.76 0.20 0.04
Matches are distributed among these distances:
168 1 0.00
169 38 0.02
170 293 0.18
171 1269 0.78
172 15 0.01
173 6 0.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (170 bp):
AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
AAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTGAG
ATAAATATTCAATTATAGTCTGTTTTAATGAAAAATGTAA
Found at i:1781 original size:342 final size:341
Alignment explanation
Indices: 1001--3515 Score: 1995
Period size: 342 Copynumber: 7.4 Consensus size: 341
991 TAAAGGGTGA
* * *
1001 CTATAAATGAACTTTTCTTGTCAATGAATACTTTTTTCTTCAGGTTTCTCGAA-ATAAATATTCA
1 CTATAAAT-AACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTC-AAGACAAATATTCA
* * * * ** *
1065 ATTATAGTCTGTTTGAATCATAAATGTAAAAAAATTCAACCGAAAATCAATTATGAGATTAGAAA
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAA
* * *
1130 ACC-TTTGAAAGCGAGTAATAAGGCTTTTGAGGGAATGGGTGACTATAAATGGATTTTTCTT-TA
129 ACCATTTG-AAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGT-
* * ** * * *
1193 TAATGAATACTTTTTCCTTCATAATTCTCGAGATAGACATTCAATTATTGTTTGTTTTAAT-AAA
192 CAATGAATACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTATAGTCTGTTTTAATAAAA
* *****
1257 AA--T-------TT-AACTTAAAATCAATTATTAGATTATAAAACCATTTAAAGCGAGTANNNNN
257 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
***** * *
1312 NNNNNTGAAGTAATGAGAGG
322 GCTTTTGAAGGAATGGGAGG
* * * * *
1332 TTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTGAAGACAAACATTCAA
1 CTATAAATA-ACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAA
* * * *
1397 TTATAGCCTCTTTTAACGAAAAATGTAAAAATATTT-AACTTAAAATGAATTATGAGATTATAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAA-ATTTCAACTTAAAATCAATTATGAGATTATAAA
* * * *
1461 ACCATATGAAGCGAGTAATATGGCTTTTGAAGGAAAGGGTGACTACAAATAGACTTTTCTTGTCA
129 ACCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCA
* * * * * *
1526 ATGAATATTTTTTTCTTCACGTTTCTCTAGATAAATATTCGATTATAGTCTGTTTGAATAAAAAA
194 ATGAATACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTATAGTCTGTTTTAATAAAAAA
* *
1591 TGTAAAAAAATTCAA-TCTAAAATCAATTATGAGATTAGAAAACCATTGT-AAGCGAGTAATAAA
259 TGTAAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATT-TAAAGCGAGTAATAAG
* * *
1654 GCTTTTGAAGGATTGGGTGA
322 GCTTTTGAAGGAATGGGAGG
* * * * * * *
1674 CTGTAAATCAACTTTTCTTGTCGATGAATCCTCTTTTCTTCACGTTTCTTAAGATAGATATTCAA
1 CTATAAAT-AACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAA
* * * *
1739 TTATAGGCTGTTTTAATTAAAAATATAAAAAATTTCAACTTAAAATCAATTATTAGATTATAAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAA
* * * * * * * **
1804 CTATTTAAAGTGAGTAATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTCCCAA
130 CCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAA
* ** * *
1869 TGAATGCTTTTTTCTTCACATTTCTCGAG-TCAAACATTCAATTATAGCCTGTTTTAACAAAAAA
195 TGAATACTTTTTTCTTCATGTTTCTCGAGAT-AAACATTCAATTATAGTCTGTTTTAATAAAAAA
* *
1933 TGTAAAAAAATTCAACTTAAAATCAATTATTAGATTATAAAACCATTTAAAGCGAGTAATAAGGG
259 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
*
1998 TTTTGAAGGAATGAGAGG
324 TTTTGAAGGAATGGGAGG
* * * *
2016 CTCTAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTCGAGAAAAATATTCAA
1 CTATAAATA-ACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAA
* * * * * *
2081 TTATAGTCTGTTTGAATCAAAAACT-TAAAAAAATTCAA-TCTAAAATCAAATATGGGATTAGAA
65 TTATAGTCTGTTTTAATGAAAAA-TGTAAAAAATTTCAACT-TAAAATCAATTATGAGATTATAA
* ********** *
2144 AACCATTGGAAGCGAGTAATAAGGNNNNNNNNNNAATGGGTGACTATAAATTGACTTTTCTTGTC
128 AACCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTC
* * * * ** * * * * *
2209 GATGAATGCTCTTTTCTTCATGTTTTTTAAGATAGATATTCTATTATAGGCTGTTTTAATTAAAA
193 AATGAATACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTATAGTCTGTTTTAATAAAAA
* ********** * *
2274 ATGTAAAAAATTTCAACTTAAAATCAATTNNNNNNNNNNAAAACTATTTAAAGTGAGTAATAAGG
258 ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
*
2339 CTTTTGAAGGAATAGGAGG
323 CTTTTGAAGGAATGGGAGG
* * * * * * * * *********
2358 CTGTAAACTGACTTTTCTTGCCAATGAATGATGTTTTCTTCATGCTTCTCAAGGCANNNNNNNNN
1 CTATAAA-TAACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAA
* ** * * *
2423 NTATAGTCTGTTTTAATGAAAAATACAAACAAA-TTGAGCTTAAAATCAAGTATGAGATTATAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAA-AAATTTCAACTTAAAATCAATTATGAGATTATAAA
* ** * * * *
2487 ACCATTTAAAGTTACTAATAAGGCTTCTGAAGGAATGGGTGACTATAAATGGACTTTTCTT-TAT
129 ACCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGT-C
* * * * * * *******
2551 AATGAATACTTTCTCCTTCATGTTTCTTGAGATAGACATTTAATTATTA-TTTG-TTTNNNNNNN
193 AATGAATACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTA-TAGTCTGTTTTAATAAAA
*** * *
2614 NNNGTAAAAACATTCAACTTAAAATCAATTACT-AGATTATAAAACCATTTAAAGCAAGTAATAA
257 AATGTAAAAAAATTCAACTTAAAATCAATTA-TGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * *
2678 TGCTTTTAAAGGAATGAGAGG
321 GGCTTTTGAAGGAATGGGAGG
* * ** * * * *
2699 CTATAAATAGACTTTTCTTATAAATGAATGCTTTTTTCTTCATATTTCACGAGGCAAACATTCAA
1 CTATAAATA-ACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAA
* * **********
2764 TTATAGCCTGTTTTAACGAAAAATGNNNNNNNNNNCAACTTAAAATCAATTATGAGATTATAAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAA
* * * * * * *
2829 CCATTTGGAGCGAGTAATATGACTTTCGAAGGAAAGGGTGACTATAAATGGACTTTTCTTGTTAA
130 CCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAA
* * * *
2894 TGAATGA-TTTTTTCTTCACGTTTCTCGAGATAAATATTCGATTATAGTCTGTTTGAATAAAAAA
195 TGAAT-ACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTATAGTCTGTTTTAATAAAAAA
* * **
2958 TGTAAAAAAATTCAACCTAAAATCAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGGC
259 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
*
3023 CTTTGAAGGAATGGTGA--
324 TTTTGAAGGAATGG-GAGG
* * * *
3040 CTATAAATCGACTTTTCTTGTCGATGAATGCTCTTTTCTTCACGTTTCTTC-AGATAAATATTCA
1 CTATAAAT-AACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTC-TCAAGACAAATATTCA
* * * * * * * ****
3104 TTTATAGGCTGTTTTAATTAATAATGTAAAACATTTTAACTTAAAATCAATTATTAGATTANNNN
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAA
****** * * * * * * * *
3169 NNNNNNTAAAGTGAGTAATAAGGCTTTTGAAGCAATGGGAGGCTGTAAATAAACTTTTCTTGCCA
129 ACCATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCA
** ** * *
3234 ATGAATGTTTTTTTCTTCATGCTTT-TC-ATGGCAAACATTCAATTATAGTCTGTTTTAATGAGA
194 ATGAATACTTTTTTCTTCATG-TTTCTCGA-GATAAACATTCAATTATAGTCTGTTTTAATAAAA
* ** *
3297 AATGTAAAAAAATTCAGCTTAAAATCAAGGATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
257 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
********
3362 GCTTTTGAAGGANNNNNNNN
322 GCTTTTGAAGGAATGGGAGG
** * * * * *** * *
3382 NNATAAATGGACTTTTCTT-TATAATGAATAC-TTTTTCTTTCATGTTTCTCAAGATTGACATTT
1 CTATAAAT-AACTTTTCTTGT-CAATGAATGCTTTTTTC-TTCACGTTTCTCAAGACAAATATTC
* * * * *
3445 AATTATTGTTTGTTTTAAT-AAAAATATAAAAAAATT-AACTTAAAATCAATTATTAGATTATAA
63 AATTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAA
3508 AACCATTT
128 AACCATTT
3516 ANNNNNNNNN
Statistics
Matches: 1695, Mismatches: 437, Indels: 95
0.76 0.20 0.04
Matches are distributed among these distances:
330 3 0.00
331 199 0.12
332 12 0.01
334 1 0.00
340 29 0.02
341 535 0.32
342 902 0.53
343 14 0.01
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (341 bp):
CTATAAATAACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGACAAATATTCAAT
TATAGTCTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAAC
CATTTGAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCAAT
GAATACTTTTTTCTTCATGTTTCTCGAGATAAACATTCAATTATAGTCTGTTTTAATAAAAAATG
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
TTGAAGGAATGGGAGG
Found at i:2007 original size:513 final size:511
Alignment explanation
Indices: 992--3516 Score: 2112
Period size: 513 Copynumber: 5.0 Consensus size: 511
982 ATGAGATTAT
* * *
992 AAAGGGTGACTATAAAT-GAACTTTTCTTGTCAATGAATACTTTTTTCTTCAGGTTTCTCGAAAT
1 AAAGGGTGACTATAAATAG-ACTTTTCTTGTCAATGAATACTTTTTTCTTCACGTTTCTCTAGAT
* * *
1056 AAATATTCAATTATAGTCTGTTTGAATCATAAATGTAAAAAAATTCAACCGAAAATCAATTATGA
65 AAATATTCAATTATAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGA
* * * *
1121 GATTAGAAAACCTTTGAAAGCGAGTAATAAGGCTTTTGAGGGAATGGGTGACTATAAATGGATTT
129 GATTAGAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT-AACTT
* * ** *
1186 TTCTT-TATAATGAATACT-TTTTCCTTCATAATTCTCGAGATAGACATTCAATTAT----TGTT
193 TTCTTGT-CAATGAATGCTCTTTT-CTTCATGTTTCTCAAGATAGACATTCAATTATAGGCTGTT
* * *
1245 TGT--TT--TAA--T-AAAAATTT-AACTTAAAATCAATTATTAGATTATAAAACCATTTAAAGC
256 T-TAATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGT
********* * *
1302 GAGTANNNNNNNNNNT-GAAGTAATGAGAGGTTATAAATAGACTTTTCTTGCCAATGAATGCTTT
320 GAGTA-ATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTT
* * * * * *
1366 TTTCTTCACATTTCT-GAAGACAAACATTCAATTATAGCCTCTTTTAACGAAAAATGTAAAAATA
384 TTTCTTCACGTTTCTCG-AGTCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAA
* * * * *
1430 TTTAACTTAAAATGAATTATGAGATTATAAAACCATATGAAGCGAGTAATATGGCTTTTGAAGG
448 TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
* *
1494 AAAGGGTGACTACAAATAGACTTTTCTTGTCAATGAATATTTTTTTCTTCACGTTTCTCTAGATA
1 AAAGGGTGACTATAAATAGACTTTTCTTGTCAATGAATACTTTTTTCTTCACGTTTCTCTAGATA
*
1559 AATATTCGATTATAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAATCTAAAATCAATTATGAG
66 AATATTCAATTATAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGAG
* * * *
1624 ATTAGAAAACCATTGTAAGCGAGTAATAAAGCTTTTGAAGGATTGGGTGACTGTAAATCAACTTT
130 ATTAGAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT-AACTTT
* * * * *
1689 TCTTGTCGATGAATCCTCTTTTCTTCACGTTTCTTAAGATAGATATTCAATTATAGGCTGTTTTA
194 TCTTGTCAATGAATGCTCTTTTCTTCATGTTTCTCAAGATAGACATTCAATTATAGGCTGTTTTA
* * *
1754 ATTAAAAATATAAAAAATTTCAACTTAAAATCAATTATTAGATTATAAAACTATTTAAAGTGAGT
259 ATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGT
*
1819 AATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTCCCAATGAATGCTTTTTTCT
324 AATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCT
* *
1884 TCACATTTCTCGAGTCAAACATTCAATTATAGCCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
389 TCACGTTTCTCGAGTCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAATTCAAC
* *
1949 TTAAAATCAATTATTAGATTATAAAACCATTTAAAGCGAGTAATAAGGGTTTTGAAGG
454 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
* * * * * * * * *
2007 AATGAGAGGCTCTAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTCGAGAAA
1 AAAGGGTGACTATAAATAGACTTTTCTTGTCAATGAATACTTTTTTCTTCACGTTTCTCTAGATA
* * *
2072 AATATTCAATTATAGTCTGTTTGAATCAAAAACT-TAAAAAAATTCAATCTAAAATCAAATATGG
66 AATATTCAATTATAGTCTGTTTGAAT-AAAAAATGTAAAAAAATTCAA-CTAAAATCAATTATGA
* ********** *
2136 GATTAGAAAACCATTGGAAGCGAGTAATAAGGNNNNNNNNNNAATGGGTGACTATAAATTGACTT
129 GATTAGAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA-TAACTT
* * * * *
2201 TTCTTGTCGATGAATGCTCTTTTCTTCATGTTTTTTAAGATAGATATTCTATTATAGGCTGTTTT
193 TTCTTGTCAATGAATGCTCTTTTCTTCATGTTTCTCAAGATAGACATTCAATTATAGGCTGTTTT
********** *
2266 AATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTNNNNNNNNNNAAAACTATTTAAAGTGAG
258 AATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAG
* * * *
2331 TAATAAGGCTTTTGAAGGAAT-AGGAGGCTGTAAACT-GACTTTTCTTGCCAATGAATGATGTTT
323 TAATAAGGCTTTCGAAGGAATGA-GAGGCTATAAA-TAGACTTTTCTTGCCAATGAATGCTTTTT
* * * * ********** ** ** * *
2394 TCTTCATGCTTCTCAAGGCANNNNNNNNNNTATAGTCTGTTTTAATGAAAAATACAAACAAATTG
386 TCTTCACGTTTCTCGAGTCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAATTC
* * ** * *
2459 AGCTTAAAATCAAGTATGAGATTATAAAACCATTTAAAGTTACTAATAAGGCTTCTGAAGG
451 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
* * * * * *
2520 AATGGGTGACTATAAATGGACTTTTCTT-TATAATGAATACTTTCTCCTTCATGTTTCT-TGAGA
1 AAAGGGTGACTATAAATAGACTTTTCTTGT-CAATGAATACTTTTTTCTTCACGTTTCTCT-AGA
* * * * ********** *
2583 TAGACATTTAATTATTA-TTTGTTT-NNNNNNNNNNGTAAAAACATTCAACTTAAAATCAATTAC
64 TAAATATTCAATTA-TAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAAC-TAAAATCAATTA-
* * * * * * * *
2646 T-AGATTATAAAACCATTTAAAGCAAGTAATAATGCTTTTAAAGGAATGAGAGGCTATAAATAGA
126 TGAGATTAGAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATA-A
* * * * * * ** * *
2710 CTTTTCTTATAAATGAATGCTTTTTTCTTCATATTTCACGAGGCAAACATTCAATTATAGCCTGT
190 CTTTTCTTGTCAATGAATGCTCTTTTCTTCATGTTTCTCAAGATAGACATTCAATTATAGGCTGT
** ********** ** *
2775 TTTAACGAAAAATGNNNNNNNNNNCAACTTAAAATCAATTATGAGATTATAAAACCATTTGGAGC
255 TTTAATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGT
* * * * * * * ** *
2840 GAGTAATATGACTTTCGAAGGAAAGGGTGACTATAAATGGACTTTTCTTGTTAATGAATGATTTT
320 GAGTAATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTTT
* * * *
2905 TTCTTCACGTTTCTCGAGAT-AAATATTCGATTATAGTCTGTTTGAATAAAAAATGTAAAAAAAT
385 TTCTTCACGTTTCTCGAG-TCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAAT
* * ** *
2969 TCAACCTAAAATCAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGGCCTTTGAAGG
449 TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
* * * * *
3032 -AATGGTGACTATAAATCGACTTTTCTTGTCGATGAATGCTCTTTTCTTCACGTTTCT-TCAGAT
1 AAAGGGTGACTATAAATAGACTTTTCTTGTCAATGAATACTTTTTTCTTCACGTTTCTCT-AGAT
* * * * * * * * *
3095 AAATATTCATTTATAGGCTGTTTTAATTAATAATGTAAAACATTTTAACTTAAAATCAATTATTA
65 AAATATTCAATTATAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAAC-TAAAATCAATTATGA
********* * * * * *
3160 GATTANNNNNNNNNNT-AAAGTGAGTAATAAGGCTTTTGAAGCAATGGGAGGCTGTAAATAAACT
129 GATTA-GAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT-AACT
* * * * ** * *
3224 TTTCTTGCCAATGAATGTTTTTTTCTTCATGCTTT-TCATGGCAAACATTCAATTATAGTCTGTT
192 TTTCTTGTCAATGAATGCTCTTTTCTTCATG-TTTCTCAAGATAGACATTCAATTATAGGCTGTT
* * * * **
3288 TTAATGAGAAATGTAAAAAAATTCAGCTTAAAATCAAGGATGAGATTATAAAACCATTTAAAGTG
256 TTAATTAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTG
* ********** * *** *
3353 AGTAATAAGGCTTTTGAAGGANNNNNNNNNNATAAATGGACTTTTCTTTATAATGAATAC-TTTT
321 AGTAATAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTTTT
* * ** * * * * *
3417 TCTTTCATGTTTCTCAAGAT-TGACATTTAATTATTGTTTGTTTTAA-TAAAAATATAAAAAAAT
386 TC-TTCACGTTTCTCGAG-TCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAAT
*
3480 T-AACTTAAAATCAATTATTAGATTATAAAACCATTTA
449 TCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
3517 NNNNNNNNNN
Statistics
Matches: 1610, Mismatches: 374, Indels: 70
0.78 0.18 0.03
Matches are distributed among these distances:
502 212 0.13
503 6 0.00
505 1 0.00
506 5 0.00
507 2 0.00
509 2 0.00
510 33 0.02
511 91 0.06
512 553 0.34
513 694 0.43
514 11 0.01
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (511 bp):
AAAGGGTGACTATAAATAGACTTTTCTTGTCAATGAATACTTTTTTCTTCACGTTTCTCTAGATA
AATATTCAATTATAGTCTGTTTGAATAAAAAATGTAAAAAAATTCAACTAAAATCAATTATGAGA
TTAGAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAACTTTTC
TTGTCAATGAATGCTCTTTTCTTCATGTTTCTCAAGATAGACATTCAATTATAGGCTGTTTTAAT
TAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAA
TAAGGCTTTCGAAGGAATGAGAGGCTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCTTC
ACGTTTCTCGAGTCAAACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAATTCAACTT
AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
Found at i:5421 original size:171 final size:171
Alignment explanation
Indices: 4988--5484 Score: 469
Period size: 171 Copynumber: 2.9 Consensus size: 171
4978 NNNNNNNNNN
* * * * ** ** * *
4988 CTTTTGAAGGAATGAGAGGCTATAAATAAACTTTTCTTGCCAATGAATGCTTTTGTCTTCACATT
1 CTTTTGAAGGAAAGGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTT
* * * * * *
5053 TCTCGAG-TCAAACATTCAATTATAGCCTGTTTTAA-CGAAGAATGTAAAAATATTCAACTTAAA
66 TCTGGAGAT-AGATATTCAATTATAGTCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAA
* *
5116 ATCAATTATGAGATTAAAAAACCATTTGAAGCGAGTAATATGG
129 ATCAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGG
*
5159 CTTTTGAAGGAAAGGGTGTCTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTT
1 CTTTTGAAGGAAAGGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTT
* ************ * * *
5224 TCTTGAGANNNNNNNNNNNNTATAGTCTGTTTGAATCAAAAATTTAAAAAAATTCAACCTAAAAT
66 TCTGGAGATAGATATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAAT
* *
5289 CAATTATGAGATTAGAAAACCCTTGGAAGCGAGTAATAAGG
131 CAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGG
********** * *
5330 CTTTTGANNNNNNNNNNGACTATAAATGGACTTTTCTTATCAGTGAATG-TTCTTTTTTTCACGT
1 CTTTTGAAGGAAAGGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTT-TTTTCTTCACGT
* *
5394 TTCTGGAGATAGATATTCAATTATAGTCTGTTTTAATCAAAAATGTAAACAATTTCAACTTAAAA
65 TTCTGGAGATAGATATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAA
* *
5459 TCAATTATTAGATTATAAAACCATTG
130 TCAATTATGAGATTAAAAAACCATTG
5485 ANNNNNNNNN
Statistics
Matches: 256, Mismatches: 67, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
170 2 0.01
171 253 0.99
172 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
CTTTTGAAGGAAAGGGTGACTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTT
TCTGGAGATAGATATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAAT
CAATTATGAGATTAAAAAACCATTGGAAGCGAGTAATAAGG
Found at i:7390 original size:172 final size:161
Alignment explanation
Indices: 7086--7752 Score: 319
Period size: 170 Copynumber: 4.0 Consensus size: 161
7076 TATAGCCTCT
* * *
7086 CATTCCTTTAGAAGCCATATTACTCGCTTTAAATCGTTTTATAATCTAATAATTGATTTTAAGTT
1 CATTCCTTCAAAAGCCATATTACTCGCTTTAAAACGTTTTATAATCTAATAATTGATTTTAAGTT
* * *
7151 GAGTTTTTTTACATTTTTATTACAATAAACTATAATTGAATGTCTATCTCAAGAAACATGAAAG-
66 GAATTTTTTTACATTTTTATTACAATAAACTATAAATGAATATCTATCTCAAGAAACATGAAAGA
*
7215 AAAAAGTATTCATTATAAAGAAAAGNNNNNNNNNNGTCACC
131 AAAAAGCATTCATTATAAAGAAAAG----------GTCACC
* * * * *
7256 CATTCCTTCAAAAGCCTTATTACTCGCTTTTACAAAGGTTTTCTAATCTCATAATTGATTTT-CG
1 CATTCCTTCAAAAGCCATATTACTCGC-TTTA-AAACGTTTTATAATCTAATAATTGATTTTAAG
* * ** **
7320 ATTGAATTTTTTTACATTTTTTATT-CAA-ACAGACTATAAATGAATATTTATTTTGAGAAAGGT
64 -TTGAATTTTTTTACA-TTTTTATTACAATA-A-ACTATAAATGAATATCTATCTCAAGAAACAT
* * **
7383 G-AAGAAAAAAGCATTCATTGA-CAAGAAAAGTTCATT
125 GAAAGAAAAAAGCATTCATT-ATAAAGAAAAGGTCACC
* ** ** *
7419 TANNNNNNNNNNTTCCTTCAAAAGCCATATTACTCGCTTTAAATGGTTTTATAATCTTGTAATTC
1 CA----------TTCCTTCAAAAGCCATATTACTCGCTTTAAAACGTTTTATAATCTAATAATTG
* * * * * ** * * * * **
7484 ATTTTAAGTTAAATATTTTTGCATTTTTTTTAAAATAGGCTATAATTGAATGTTTGTCTTGAGAA
56 ATTTTAAGTTGAATTTTTTTACATTTTTATTACAATAAACTATAAATGAATATCTATCTCAAGAA
** * *** * * *
7549 ATGTG-AAGACAAAAGCATTCATTGGCAAGAAANNNNNNNNNNTA-GCCTCT
121 ACATGAAAGAAAAAAGCATTCATTATAAAGAAA-----------AGGTCACC
* * * ** *
7599 CATTCCTTCAAAAGCCTTATCACTCTCTTTAAATGGTTTTATAATCTAATAATTGATTTTAGGTT
1 CATTCCTTCAAAAGCCATATTACTCGCTTTAAAACGTTTTATAATCTAATAATTGATTTTAAGTT
* * * * * * * *
7664 GAATGTTTTTACAATTTTATTAAAACAAACAATAATTGAATGTTTATCT-ATAGAAACATG-AAG
66 GAATTTTTTTACATTTTTATTACAATAAACTATAAATGAATATCTATCTCA-AGAAACATGAAAG
* *
7727 GAAAAAGTATTCATTATAAAGAAAAG
130 AAAAAAGCATTCATTATAAAGAAAAG
7753 TCCATTTANN
Statistics
Matches: 387, Mismatches: 75, Indels: 80
0.71 0.14 0.15
Matches are distributed among these distances:
159 1 0.00
163 4 0.01
170 204 0.53
171 44 0.11
172 52 0.13
173 77 0.20
174 1 0.00
180 3 0.01
181 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.37
Consensus pattern (161 bp):
CATTCCTTCAAAAGCCATATTACTCGCTTTAAAACGTTTTATAATCTAATAATTGATTTTAAGTT
GAATTTTTTTACATTTTTATTACAATAAACTATAAATGAATATCTATCTCAAGAAACATGAAAGA
AAAAAGCATTCATTATAAAGAAAAGGTCACC
Found at i:7851 original size:340 final size:324
Alignment explanation
Indices: 7256--7875 Score: 572
Period size: 340 Copynumber: 1.8 Consensus size: 324
7246 NNNNGTCACC
* * * *
7256 CATTCCTTCAAAAGCCTTATTACTCGCTTTTACAAAGGTTTTCTAATCTCATAATTGATTTTCGA
1 CATTCCTTCAAAAGCCTTATCACTCGCTTTTACAAAGGTTTTATAATCTAATAATTGATTTTAGA
* * * * * * **
7321 TTGAATTTTTTTACATTTTTTATTCAAACAGACTATAAATGAATATTTATTTTGAGAAAGGTGAA
66 TTGAATGTTTTTACATATTTTATTAAAACAAACAATAAATGAATATTTATTATGAGAAACATGAA
* * *
7386 GAAAAAAGCATTCATTGACAAGAAAAGTTCATTTANNNNNNNNNNTTCCTTCAAAAGCCATATTA
131 GAAAAAAGCATTCATTGAAAAGAAAAGTCCATTTA----------TTCCTTCAAAAACCATATTA
* * ** * * *
7451 CTCGCTTTAAATGGTTTTATAATCTTGTAATTCATTTTAAGTTAAATATTTTTGCATTTTT-TTT
186 CTCACTTTAAATGGCTTTATAATCTAATAATTCATTTTAAGTGAAATATTTTTACATTTTTGATT
* *
7515 AAAATAGGCTATAATTGAATGTTTGTCTTGAGAAATGTGAAGACAAAAGCATTCATTGGCAAGAA
251 AAAACAGACTATAATTGAATGTTTGTCTTGAGAAATGTGAAGACAAAAGCATTCATTGGCAAGAA
7580 ANNNNNNNNNNTAGCCTCT
316 A----------TAGCCTCT
* * *
7599 CATTCCTTCAAAAGCCTTATCACTCTC-TTTA-AATGGTTTTATAATCTAATAATTGATTTTAGG
1 CATTCCTTCAAAAGCCTTATCACTCGCTTTTACAAAGGTTTTATAATCTAATAATTGATTTTAGA
* *
7662 TTGAATGTTTTTACA-ATTTTATTAAAACAAACAATAATTGAATGTTTATCTAT-AGAAACATGA
66 TTGAATGTTTTTACATATTTTATTAAAACAAACAATAAATGAATATTTAT-TATGAGAAACATGA
* * *
7725 AGGAAAAAGTATTCATT-ATAAAGAAAAGTCCATTTANNNNNNNNNNTTCCTTCAAAAACCTTAT
130 AGAAAAAAGCATTCATTGA-AAAGAAAAGTCCATTTA----------TTCCTTCAAAAACCATAT
* *
7789 TACTCACTTTAAATGGCTTTATAATCTAATACTT-GTTTTGAAGTAGAAAT-TTTTTACATTTTT
184 TACTCACTTTAAATGGCTTTATAATCTAATAATTCATTTT-AAGT-GAAATATTTTTACATTTTT
7852 GATTAAAACAGACTATAATTGAAT
247 GATTAAAACAGACTATAATTGAAT
7876 ATCTATCNNN
Statistics
Matches: 238, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
339 5 0.02
340 137 0.58
341 67 0.28
342 4 0.02
343 25 0.11
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.38
Consensus pattern (324 bp):
CATTCCTTCAAAAGCCTTATCACTCGCTTTTACAAAGGTTTTATAATCTAATAATTGATTTTAGA
TTGAATGTTTTTACATATTTTATTAAAACAAACAATAAATGAATATTTATTATGAGAAACATGAA
GAAAAAAGCATTCATTGAAAAGAAAAGTCCATTTATTCCTTCAAAAACCATATTACTCACTTTAA
ATGGCTTTATAATCTAATAATTCATTTTAAGTGAAATATTTTTACATTTTTGATTAAAACAGACT
ATAATTGAATGTTTGTCTTGAGAAATGTGAAGACAAAAGCATTCATTGGCAAGAAATAGCCTCT
Done.