genome.fa.s2977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400230.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_344.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52899

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3312	171	19.4	170	71	5	1414	34	13	10	34	1.79
9330--10707	341	4.0	342	76	4	984	34	13	11	35	1.80
9330--10707	171	8.1	170	72	6	940	34	13	11	35	1.80
11059--11384	171	2.0	161	81	7	375	35	11	13	35	1.82
11686--12871	171	7.0	169	75	8	933	37	10	14	34	1.81
11686--12868	341	3.5	343	83	2	1400	37	10	14	34	1.81
14612--14945	169	2.0	171	83	3	424	41	11	12	34	1.79
14593--15248	170	3.9	169	75	7	517	37	10	13	33	1.80
17143--19055	171	11.2	171	81	4	1826	38	11	14	35	1.83
19433--19915	171	2.8	168	74	5	466	39	10	12	35	1.79
22775--23520	171	4.4	171	76	6	562	35	12	11	35	1.80
23728--24377	171	3.8	170	76	6	526	40	11	13	32	1.80
24833--25155	169	2.0	160	77	9	319	35	11	14	35	1.82
24990--25305	172	1.8	171	85	3	438	37	12	15	35	1.85
26612--27359	171	4.4	171	78	3	609	34	12	13	35	1.83
27558--27865	171	1.8	171	84	4	424	37	11	13	37	1.82
28003--29019	171	6.0	172	77	4	1006	37	13	13	33	1.83
28003--29023	340	3.0	339	84	2	1283	37	13	13	33	1.83
30287--31065	171	4.6	167	77	5	620	36	11	14	35	1.82
30192--31065	342	2.6	338	78	6	839	35	11	14	35	1.83
32750--34047	171	7.6	171	71	7	703	33	12	11	37	1.80
32750--33837	342	3.2	341	75	5	921	33	12	11	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34676--35413	171	4.3	170	75	6	577	34	13	11	37	1.81
36058--36535	171	2.8	167	78	6	485	34	12	12	38	1.81
36734--37934	171	7.1	169	71	5	715	36	10	12	34	1.79
40639--41338	172	4.1	173	77	4	632	35	14	10	37	1.80
41715--42648	171	5.5	171	75	3	716	33	13	10	37	1.79
43497--44666	341	3.4	325	76	10	769	36	10	13	34	1.79
44342--44666	170	2.0	161	81	6	311	36	9	13	37	1.77
45282--45645	172	2.1	171	83	2	471	40	11	13	35	1.80
46138--46875	171	4.3	170	72	5	576	37	11	13	34	1.82
46185--46870	342	2.0	332	83	5	826	37	11	14	33	1.82
47111--47618	171	3.0	170	77	3	511	37	12	14	33	1.84
47498--47770	148	1.9	147	84	5	372	37	10	15	35	1.83
47915--48831	170	5.4	171	77	3	855	36	10	13	35	1.80
47916--49058	170	6.7	170	74	4	832	35	10	13	34	1.80
49781--50113	171	2.0	161	76	10	298	37	11	14	34	1.81

Tables:   1

The End!