Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400248.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3456.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.34

Warning! 92 characters in sequence are not A, C, G, or T


Found at i:800 original size:171 final size:171

Alignment explanation


    Indices: 510--849  Score: 399
    Period size: 171  Copynumber: 2.0  Consensus size: 171

        500 NNNNNNNNCG

                                             *      *                        
        510 TTTAAAGCGAGTAATAAGCTTTTAGAAGGAATGGGTGACTCTAAATGGACTTCTCTTGTCAATGA
          1 TTTAAAGCGAGTAATAAGCTTTTAGAAGGAATGAGTGACTATAAATGGACTTCTCTTGTCAATGA

                                  *    * *     *     *     *       *         
        575 ATGCTTGTTTCTTTACTTACCTTAAGGTAGACATTTAATTATAATATGTTTTAATCAAAAATATA
         66 ATGCTTGTTTCTTTACTTACCTCAAGGAAAACATTCAATTACAATATATTTTAATAAAAAATAT-

                                               *       
        640 AAAAAAATT-AACTTAAAA-CTAATTATGAGATTATAAAACAA
        130 AAAAAAATTCAACTTAAAATC-AATTATGAGATTAAAAAACAA

                            *                                         *      
        681 TTTAAAGCGAGTAATATGCCTTTT-GAAGGAATGAGTGACTATAAATGGAC-TCT-TTTTCTTAA
          1 TTTAAAGCGAGTAATAAG-CTTTTAGAAGGAATGAGTGACTATAAATGGACTTCTCTTGTC--AA

                                     *                       * *             
        743 TGAATGAC-T-TTTCTTTTACGTT-TCTCAAGGAAAACATTCAATTACAGTCTATTTTAATAAAA
         63 TGAATG-CTTGTTTC-TTTAC-TTACCTCAAGGAAAACATTCAATTACAATATATTTTAATAAAA

               *    *                                    
        805 AATGTAAAGAAATTCAACTTAAAATCAATTATGAGATTAAAAAAC
        125 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAAAAAAC

        850 TATNNNNNNN


Statistics
Matches: 144,  Mismatches: 17, Indels: 16
        0.81            0.10        0.09

Matches are distributed among these distances:
 169    4  0.03
 170   15  0.10
 171  116  0.81
 172    9  0.06

ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36


Consensus pattern (171 bp):   
TTTAAAGCGAGTAATAAGCTTTTAGAAGGAATGAGTGACTATAAATGGACTTCTCTTGTCAATGA
ATGCTTGTTTCTTTACTTACCTCAAGGAAAACATTCAATTACAATATATTTTAATAAAAAATATA
AAAAAATTCAACTTAAAATCAATTATGAGATTAAAAAACAA
Done.