Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400250.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_346.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3356
ACGTcount: A:0.17, C:0.06, G:0.07, T:0.17

Warning! 1765 characters in sequence are not A, C, G, or T


Found at i:3325 original size:19 final size:19

Alignment explanation


    Indices: 3301--3337  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3291 AATGAATGCC

                               
       3301 TTTTTCTTCACGTTTCTCT
          1 TTTTTCTTCACGTTTCTCT

                              
       3320 TTTTTCTTCACGTTTCTC
          1 TTTTTCTTCACGTTTCTC

       3338 AAGGTAGACA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.05, C:0.27, G:0.05, T:0.62


Consensus pattern (19 bp):   
TTTTTCTTCACGTTTCTCT
Done.