Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397256.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_56.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13963513
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 99179 characters in sequence are not A, C, G, or T
File 20 of 29
Found at i:7649385 original size:3 final size:3
Alignment explanation
Indices: 7649377--7649411 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7649367 CTTTGGGAAA
7649377 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7649412 ACCTAAGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7669348 original size:14 final size:13
Alignment explanation
Indices: 7669321--7669355 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
7669311 ATAAAAATTT
7669321 ATTTTAATTTAAA
1 ATTTTAATTTAAA
*
7669334 ATTTTTATTTAAAA
1 ATTTTAATTT-AAA
7669348 ATTTTAAT
1 ATTTTAAT
7669356 ATATTATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTTTAATTTAAA
Found at i:7674043 original size:24 final size:21
Alignment explanation
Indices: 7674016--7674065 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 21
7674006 TTTATTTTCA
7674016 TTATTAGATTTTATGATTCTAATT
1 TTATTAGATTTTAT-ATT-T-ATT
**
7674040 TTATTTTATTTTATATTTATT
1 TTATTAGATTTTATATTTATT
7674061 TTATT
1 TTATT
7674066 TATTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 1 0.04
23 3 0.12
24 12 0.50
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (21 bp):
TTATTAGATTTTATATTTATT
Found at i:7674047 original size:5 final size:5
Alignment explanation
Indices: 7674037--7674071 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
7674027 TATGATTCTA
7674037 ATTTT ATTTT ATTTT ATATTT ATTTT A-TTT ATTTT
1 ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT
7674072 TTGAGACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:7674060 original size:11 final size:11
Alignment explanation
Indices: 7674023--7674064 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
7674013 TCATTATTAG
7674023 ATTTTATGATTCT
1 ATTTTAT-ATT-T
7674036 AATTTTAT-TTT
1 -ATTTTATATTT
7674047 ATTTTATATTT
1 ATTTTATATTT
7674058 ATTTTAT
1 ATTTTAT
7674065 TTATTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 7 0.26
11 11 0.41
12 2 0.07
14 7 0.26
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (11 bp):
ATTTTATATTT
Found at i:7674601 original size:19 final size:20
Alignment explanation
Indices: 7674577--7674616 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
7674567 GACTAGAATC
7674577 TATTTTTAAATGAAT-TAAG
1 TATTTTTAAATGAATCTAAG
7674596 TATTTTTAAATGAATCTAAG
1 TATTTTTAAATGAATCTAAG
7674616 T
1 T
7674617 CAAACTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (20 bp):
TATTTTTAAATGAATCTAAG
Found at i:7677859 original size:13 final size:13
Alignment explanation
Indices: 7677840--7677873 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7677830 TCCCATTTCT
7677840 ATTTTTTT-TATA
1 ATTTTTTTGTATA
7677852 ATTTTTTTGTATA
1 ATTTTTTTGTATA
*
7677865 ATTATTTTG
1 ATTTTTTTG
7677874 AGTTGTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (13 bp):
ATTTTTTTGTATA
Found at i:7678447 original size:9 final size:9
Alignment explanation
Indices: 7678433--7678507 Score: 105
Period size: 9 Copynumber: 8.3 Consensus size: 9
7678423 TCTTTTAAAA
7678433 GTTCGTTAT
1 GTTCGTTAT
*
7678442 GTTCGTTGT
1 GTTCGTTAT
*
7678451 GTTGGTTAT
1 GTTCGTTAT
*
7678460 CTTCGTTAT
1 GTTCGTTAT
*
7678469 ATTCGTTAT
1 GTTCGTTAT
7678478 GTTCGTTAT
1 GTTCGTTAT
*
7678487 GTTCGTTGT
1 GTTCGTTAT
7678496 GTTCGTTAT
1 GTTCGTTAT
7678505 GTT
1 GTT
7678508 AGGTGCATCT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.09, C:0.11, G:0.24, T:0.56
Consensus pattern (9 bp):
GTTCGTTAT
Found at i:7690643 original size:14 final size:15
Alignment explanation
Indices: 7690616--7690644 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7690606 CTATTTAGTT
7690616 TTTTAAGTAAAAAAA
1 TTTTAAGTAAAAAAA
7690631 TTTTAAG-AAAAAAA
1 TTTTAAGTAAAAAAA
7690645 ACATAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
TTTTAAGTAAAAAAA
Found at i:7690645 original size:15 final size:15
Alignment explanation
Indices: 7690616--7690645 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7690606 CTATTTAGTT
*
7690616 TTTTAAGTAAAAAAA
1 TTTTAAGAAAAAAAA
7690631 TTTTAAGAAAAAAAA
1 TTTTAAGAAAAAAAA
7690646 CATAAATCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
TTTTAAGAAAAAAAA
Found at i:7691465 original size:21 final size:21
Alignment explanation
Indices: 7691420--7691465 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7691410 TTGATAATTA
* *
7691420 ATATTAATTAAATTATTTTTC
1 ATATTAATCAAATTATTGTTC
* *
7691441 ATATTAATCATATTATTGTTG
1 ATATTAATCAAATTATTGTTC
7691462 ATAT
1 ATAT
7691466 GATCAATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (21 bp):
ATATTAATCAAATTATTGTTC
Found at i:7691873 original size:6 final size:7
Alignment explanation
Indices: 7691858--7691882 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7691848 TGTCCTTTAT
7691858 AAAATAA
1 AAAATAA
7691865 AAAATAA
1 AAAATAA
7691872 AAAATAA
1 AAAATAA
7691879 AAAA
1 AAAA
7691883 CTATGTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:7697492 original size:65 final size:65
Alignment explanation
Indices: 7697388--7697513 Score: 180
Period size: 65 Copynumber: 1.9 Consensus size: 65
7697378 TTCAACATTT
** * *
7697388 TAAAGTAATATTTGGTATGAGAAAAGTGAAAGTACATTTTTTACCATATGTTTAATTAAATATTA
1 TAAAGTAATATTTGGTATGAGAAAAGTGAAAACACATTTTTTACAATATGTTCAATTAAATATTA
* * * *
7697453 TAAAGTAATATTTTGTATGAGAAAGGTGAAAACATATTTTTTACAATGTGTTCAATTAAAT
1 TAAAGTAATATTTGGTATGAGAAAAGTGAAAACACATTTTTTACAATATGTTCAATTAAAT
7697514 TATATTGTAG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.40
Consensus pattern (65 bp):
TAAAGTAATATTTGGTATGAGAAAAGTGAAAACACATTTTTTACAATATGTTCAATTAAATATTA
Found at i:7697753 original size:26 final size:26
Alignment explanation
Indices: 7697724--7697832 Score: 75
Period size: 26 Copynumber: 4.1 Consensus size: 26
7697714 AAAAAATATT
7697724 AAAATAAAATATAAATATAAGAATAA
1 AAAATAAAATATAAATATAAGAATAA
* *
7697750 AAAATTAAAT-TAAAT-TAAAATATAA
1 AAAATAAAATATAAATATAAGA-ATAA
7697775 AAAATTAAAATTTATATAATATAAGTAA-AA
1 AAAA-TAAAA--TATA-AATATAAG-AATAA
* * *
7697805 TAAATTAAAATA-ATATATAA-TATAA
1 -AAAATAAAATATAAATATAAGAATAA
7697830 AAA
1 AAA
7697833 TTATATTAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
24 8 0.12
25 15 0.23
26 19 0.29
27 1 0.02
28 3 0.05
29 2 0.03
30 10 0.15
31 7 0.11
32 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAATAAAATATAAATATAAGAATAA
Found at i:7697763 original size:25 final size:26
Alignment explanation
Indices: 7697716--7697783 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
7697706 ATTAAAATAA
* *
7697716 AAAATAT-TAAAATAAAATATAAATAT
1 AAAATATAAAAAATTAAATATAAAT-T
*
7697742 AAGA-ATAAAAAATTAAAT-TAAATT
1 AAAATATAAAAAATTAAATATAAATT
7697766 AAAATATAAAAAATTAAA
1 AAAATATAAAAAATTAAA
7697784 ATTTATATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 4 0.11
25 20 0.56
26 12 0.33
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (26 bp):
AAAATATAAAAAATTAAATATAAATT
Found at i:7697781 original size:15 final size:15
Alignment explanation
Indices: 7697705--7697785 Score: 59
Period size: 15 Copynumber: 5.6 Consensus size: 15
7697695 ATAATATTAT
7697705 AATTAAAATA-AAAA
1 AATTAAAATATAAAA
*
7697719 ATATTAAAATAAAATATA
1 A-ATTAAAATATAA-A-A
*
7697737 AATATAAGA-ATAAAA
1 AAT-TAAAATATAAAA
7697752 AATT-AAAT-T---A
1 AATTAAAATATAAAA
7697762 AATTAAAATATAAAA
1 AATTAAAATATAAAA
7697777 AATTAAAAT
1 AATTAAAAT
7697786 TTATATAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 21
0.69 0.04 0.27
Matches are distributed among these distances:
10 5 0.09
11 4 0.08
12 1 0.02
13 3 0.06
14 2 0.04
15 23 0.43
16 3 0.06
17 6 0.11
18 6 0.11
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (15 bp):
AATTAAAATATAAAA
Found at i:7697825 original size:31 final size:30
Alignment explanation
Indices: 7697695--7697829 Score: 113
Period size: 32 Copynumber: 4.5 Consensus size: 30
7697685 AAAATATTTT
*
7697695 ATAATATTATAAT-TAAAATAAAAAATATTAAA
1 ATAATA-TATAATAT-AAGTAAAAAA-ATTAAA
* *
7697727 ATAAAATATAAATATAAGAATAAAAAATTAAA
1 ATAATATAT-AATATAAGTA-AAAAAATTAAA
* *
7697759 TTAA-AT-TAAAAT-A-T-AAAAAATTAAA
1 ATAATATATAATATAAGTAAAAAAATTAAA
*
7697784 AT-TTATATAATATAAGTAAAATAAATTAAA
1 ATAATATATAATATAAGTAAAA-AAATTAAA
7697814 ATAATATATAATATAA
1 ATAATATATAATATAA
7697830 AAATTATATT
Statistics
Matches: 83, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
25 14 0.17
26 5 0.06
27 1 0.01
28 2 0.02
29 7 0.08
30 11 0.13
31 17 0.20
32 20 0.24
33 6 0.07
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (30 bp):
ATAATATATAATATAAGTAAAAAAATTAAA
Found at i:7697848 original size:29 final size:29
Alignment explanation
Indices: 7697721--7697881 Score: 88
Period size: 29 Copynumber: 5.6 Consensus size: 29
7697711 AATAAAAAAT
* **
7697721 ATTAAAATAAAATATAAATATAAGAATAAAAA
1 ATTAAAATAATATAT-AATATAA-AA-ATTAA
* * *
7697753 ATTAAATTAA-AT-TAAAATATAAA--AA
1 ATTAAAATAATATATAATATAAAAATTAA
* *
7697778 ATTAAAAT-TTATATAATATAAGTAAAATAA
1 ATTAAAATAATATATAATATAA--AAATTAA
*
7697808 ATTAAAATAATATATAATATAAAAATTAT
1 ATTAAAATAATATATAATATAAAAATTAA
7697837 ATTAAAGA-AATA-A-AA-ATAAAAATATAA
1 ATTAAA-ATAATATATAATATAAAAAT-TAA
* *
7697864 GATTATAATAATAAATAA
1 -ATTAAAATAATATATAA
7697882 AAAATATATA
Statistics
Matches: 104, Mismatches: 12, Indels: 28
0.72 0.08 0.19
Matches are distributed among these distances:
25 11 0.11
26 14 0.13
27 6 0.06
28 15 0.14
29 21 0.20
30 14 0.13
31 14 0.13
32 9 0.09
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.31
Consensus pattern (29 bp):
ATTAAAATAATATATAATATAAAAATTAA
Found at i:7697885 original size:33 final size:36
Alignment explanation
Indices: 7697708--7697889 Score: 100
Period size: 39 Copynumber: 5.1 Consensus size: 36
7697698 ATATTATAAT
* *
7697708 TAAAATA-AAAAA-TATTA-AAATAAA-ATATAAATA
1 TAAAATATAAAAATTATAATAAATAAATA-AAAAATA
7697741 TAAGAATA-AAAAATTA-AATTAAATTAAAATATAAAAA-A
1 TAA-AATATAAAAATTATAA-TAAA-T-AAATA-AAAAATA
* *
7697779 TTAAAATTTATATAA-TATAAGTAAAATAAATTAAAATAATA
1 -TAAAATATA-AAAATTATAA-T-AAATAAA-TAAAA-AATA
* * *
7697820 TATAATATAAAAATTATATTAAAGAAAT-AAAAATA
1 TAAAATATAAAAATTATAATAAATAAATAAAAAATA
*
7697855 -AAAATAT-AAGATTATAAT-AATAAATAAAAAATA
1 TAAAATATAAAAATTATAATAAATAAATAAAAAATA
7697888 TA
1 TA
7697890 TATGATATTA
Statistics
Matches: 117, Mismatches: 14, Indels: 35
0.70 0.08 0.21
Matches are distributed among these distances:
32 6 0.05
33 19 0.16
34 17 0.15
35 6 0.05
36 6 0.05
37 2 0.02
38 13 0.11
39 22 0.19
40 22 0.19
41 4 0.03
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (36 bp):
TAAAATATAAAAATTATAATAAATAAATAAAAAATA
Found at i:7697905 original size:29 final size:28
Alignment explanation
Indices: 7697835--7697905 Score: 65
Period size: 29 Copynumber: 2.4 Consensus size: 28
7697825 TATAAAAATT
7697835 ATATTAAAGAAATAAAAATAAAAATATAAG
1 ATATT-AA-AAATAAAAATAAAAATATAAG
* *
7697865 AT-TATAATAATAAATAA-AAAATATATATG
1 ATAT-TAAAAATAAA-AATAAAA-ATATAAG
7697894 ATATTAAAAATA
1 ATATTAAAAATA
7697906 TATTTAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
28 10 0.29
29 20 0.59
30 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (28 bp):
ATATTAAAAATAAAAATAAAAATATAAG
Found at i:7698022 original size:15 final size:15
Alignment explanation
Indices: 7698001--7698056 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
7697991 TTATTTTTTC
7698001 TATAATTACATTATT
1 TATAATTACATTATT
*
7698016 TACAATTACATTATT
1 TATAATTACATTATT
* *
7698031 TATAATCACATTACT
1 TATAATTACATTATT
7698046 TATAATTACAT
1 TATAATTACAT
7698057 GACATTATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATTACATTATT
Found at i:7719074 original size:15 final size:16
Alignment explanation
Indices: 7719043--7719081 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7719033 TAAATTTTTT
*
7719043 AAAAAAATTTTATTTA
1 AAAAAAATCTTATTTA
7719059 AAAAAAATCTTA-TTA
1 AAAAAAATCTTATTTA
7719074 AAATAAAA
1 AAA-AAAA
7719082 GAACTCAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAAAATCTTATTTA
Found at i:7725276 original size:20 final size:19
Alignment explanation
Indices: 7725247--7725285 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
7725237 CTCCCCAGCC
7725247 AAAAGAAAGAGAAAA-AAAA
1 AAAAGAAAGA-AAAAGAAAA
7725266 AAAAGGAAAGAAAAAGAAAA
1 AAAA-GAAAGAAAAAGAAAA
7725286 NNNNNNNNNN
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (19 bp):
AAAAGAAAGAAAAAGAAAA
Found at i:7725529 original size:22 final size:22
Alignment explanation
Indices: 7725462--7725530 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
7725452 TATTTATTTT
** *
7725462 TAATTTATTTTTTAAATATGAA
1 TAATTTATAATTTAAATATTAA
* **
7725484 TAATTTATAAGTTATTTTATTAA
1 TAATTTATAATTTA-AATATTAA
7725507 TAATTTATAATTTAAATATTAA
1 TAATTTATAATTTAAATATTAA
7725529 TA
1 TA
7725531 TTTTGTTTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
22 19 0.51
23 18 0.49
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (22 bp):
TAATTTATAATTTAAATATTAA
Found at i:7725579 original size:19 final size:19
Alignment explanation
Indices: 7725520--7725582 Score: 74
Period size: 19 Copynumber: 3.2 Consensus size: 19
7725510 TTTATAATTT
7725520 AAATATTAATATTTTGTTTA
1 AAATATTAATATTTTG-TTA
*
7725540 TAAT-TTAATATTAATTTGTTA
1 AAATATTAATA-T--TTTGTTA
7725561 AAATATTAATATTTTGTTA
1 AAATATTAATATTTTGTTA
7725580 AAA
1 AAA
7725583 GTTGGAATCA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 16 0.43
20 4 0.11
21 7 0.19
22 10 0.27
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
AAATATTAATATTTTGTTA
Found at i:7731871 original size:17 final size:18
Alignment explanation
Indices: 7731849--7731882 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7731839 TCTTGAATAG
7731849 CTTTTTCTT-TTTTCTAC
1 CTTTTTCTTCTTTTCTAC
7731866 CTTTTTCTTCTTTTCTA
1 CTTTTTCTTCTTTTCTA
7731883 AGATTTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTTTTCTTCTTTTCTAC
Found at i:7737550 original size:6 final size:6
Alignment explanation
Indices: 7737541--7737610 Score: 52
Period size: 6 Copynumber: 11.2 Consensus size: 6
7737531 TGCCGTTGAT
** * * *
7737541 GGTGAG GGTGAG GGTGAG GACGAG GATG-G TGGTGTTG GCGTTGAC GGTGAG
1 GGTGAG GGTGAG GGTGAG GGTGAG GGTGAG -GGTG-AG G-G-TGAG GGTGAG
7737592 GGTGAG GGTGAG GGTGAG G
1 GGTGAG GGTGAG GGTGAG G
7737611 AAGAGGATGG
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
5 1 0.02
6 44 0.85
7 2 0.04
8 3 0.06
9 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.60, T:0.20
Consensus pattern (6 bp):
GGTGAG
Found at i:7737611 original size:45 final size:45
Alignment explanation
Indices: 7737517--7737604 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
7737507 AGAGGTGGTG
*
7737517 GAGGATGGTGGTGTTGCCGTTGATGGTGAGGGTGAGGGTGAGGAC
1 GAGGATGGTGGTGTTGCCGTTGACGGTGAGGGTGAGGGTGAGGAC
*
7737562 GAGGATGGTGGTGTTGGCGTTGACGGTGAGGGTGAGGGTGAGG
1 GAGGATGGTGGTGTTGCCGTTGACGGTGAGGGTGAGGGTGAGG
7737605 GTGAGGAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.15, C:0.06, G:0.56, T:0.24
Consensus pattern (45 bp):
GAGGATGGTGGTGTTGCCGTTGACGGTGAGGGTGAGGGTGAGGAC
Found at i:7743457 original size:18 final size:19
Alignment explanation
Indices: 7743420--7743460 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
7743410 AAATTATAAA
* *
7743420 AATTAAAATATTTTTTATT
1 AATTAAAATAATTATTATT
7743439 AATTAAAA-AATTATTATT
1 AATTAAAATAATTATTATT
7743457 AATT
1 AATT
7743461 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTAAAATAATTATTATT
Found at i:7743990 original size:10 final size:10
Alignment explanation
Indices: 7743975--7744002 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7743965 TTTTTTTAAT
7743975 TAATAAAAAA
1 TAATAAAAAA
7743985 TAATAAAAAA
1 TAATAAAAAA
7743995 TAATAAAA
1 TAATAAAA
7744003 TTATATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
TAATAAAAAA
Found at i:7759828 original size:3 final size:3
Alignment explanation
Indices: 7759820--7759849 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7759810 CTAAAAGCTT
7759820 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7759850 GAAGTGGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7760072 original size:17 final size:17
Alignment explanation
Indices: 7760052--7760100 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
7760042 AATTTCATTC
7760052 TAATTTAAATTTAAAAA
1 TAATTTAAATTTAAAAA
* *
7760069 TAATTTGAACTTAAAAA
1 TAATTTAAATTTAAAAA
7760086 -AATTTAAATTTAAAA
1 TAATTTAAATTTAAAA
7760101 TGACTTGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATTTAAATTTAAAAA
Found at i:7764483 original size:3 final size:3
Alignment explanation
Indices: 7764475--7764506 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7764465 ACCTTCCACA
7764475 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
7764507 ATTAACACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:7770756 original size:71 final size:71
Alignment explanation
Indices: 7770636--7770784 Score: 253
Period size: 71 Copynumber: 2.1 Consensus size: 71
7770626 CTTCCTCATT
* *
7770636 ATTTCAACGCTATAGCAGTTATCATAGCATTTCTCAATTGAACACTACGTATTCCAACTACTAGT
1 ATTTCAACACTATAGCAGTTATCAGAGCATTTCTCAATTGAACACTACGTATTCCAACTACTAGT
7770701 ACTAGA
66 ACTAGA
* **
7770707 ATTTCAACACTATAGTAGTTATCAGAGCATTTCTCAATTGAACGTTACGTATTCCAACTACTAGT
1 ATTTCAACACTATAGCAGTTATCAGAGCATTTCTCAATTGAACACTACGTATTCCAACTACTAGT
7770772 ACTAGA
66 ACTAGA
7770778 ATTTCAA
1 ATTTCAA
7770785 ATGGGACACC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (71 bp):
ATTTCAACACTATAGCAGTTATCAGAGCATTTCTCAATTGAACACTACGTATTCCAACTACTAGT
ACTAGA
Found at i:7772925 original size:19 final size:21
Alignment explanation
Indices: 7772893--7772933 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7772883 TAATGTTTGA
7772893 AAAAAATTACTAAAT-AATTTT
1 AAAAAATTA-TAAATAAATTTT
7772914 AAAAAATT-TAAATAAATTTT
1 AAAAAATTATAAATAAATTTT
7772934 TATTTTTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 8 0.42
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAAAATTATAAATAAATTTT
Found at i:7780308 original size:30 final size:30
Alignment explanation
Indices: 7780248--7780308 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7780238 GACATAGGAT
* *
7780248 TCATGGCTACTCGTTAAAAGTGTTACATCC
1 TCATGGCTACCCGTTAAAAGTGTAACATCC
* * *
7780278 TCATGGCTCCCCGTTAAGAGTGTAATATCC
1 TCATGGCTACCCGTTAAAAGTGTAACATCC
7780308 T
1 T
7780309 TACGGTTCCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (30 bp):
TCATGGCTACCCGTTAAAAGTGTAACATCC
Found at i:7781996 original size:3 final size:3
Alignment explanation
Indices: 7781990--7782014 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7781980 GGTAATAATT
7781990 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
7782015 AAGTTGATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7786179 original size:2 final size:2
Alignment explanation
Indices: 7786172--7786202 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7786162 TCACACGACA
7786172 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7786203 ATACTGGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7788403 original size:37 final size:34
Alignment explanation
Indices: 7788362--7788445 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
7788352 ATTTGATAAG
*
7788362 TATTAATATTTAAC-TTAAAATATTAAAAAAATAAAAA
1 TATTAATATTTAACTTTAAAAGATT----AAATAAAAA
* *
7788399 TATTAAGATTTAACTTTAAAAGATTAATTAAAAA
1 TATTAATATTTAACTTTAAAAGATTAAATAAAAA
7788433 TATTAATATTTAA
1 TATTAATATTTAA
7788446 ATTATACAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 20 0.48
37 13 0.31
38 9 0.21
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (34 bp):
TATTAATATTTAACTTTAAAAGATTAAATAAAAA
Found at i:7792222 original size:2 final size:2
Alignment explanation
Indices: 7792215--7792249 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7792205 GAAATGAAGG
7792215 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7792250 GCTTATATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7795494 original size:14 final size:15
Alignment explanation
Indices: 7795475--7795512 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7795465 GATAGCTTGT
7795475 TGTTATATGT-TTAC
1 TGTTATATGTATTAC
*
7795489 TGTTATATTTCATTAC
1 TGTTATATGT-ATTAC
7795505 TGTTATAT
1 TGTTATAT
7795513 TTTGATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
16 12 0.57
ACGTcount: A:0.24, C:0.08, G:0.11, T:0.58
Consensus pattern (15 bp):
TGTTATATGTATTAC
Found at i:7796724 original size:15 final size:16
Alignment explanation
Indices: 7796704--7796733 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7796694 CTATTATGTG
7796704 GATTTT-ATTTTTAAT
1 GATTTTAATTTTTAAT
7796719 GATTTTAATTTTTAA
1 GATTTTAATTTTTAA
7796734 AAATTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
GATTTTAATTTTTAAT
Found at i:7797660 original size:19 final size:19
Alignment explanation
Indices: 7797636--7797676 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
7797626 ATTGTATTTT
7797636 AATTTTTTAATAGTAAAAA
1 AATTTTTTAATAGTAAAAA
*
7797655 AATTTTTTAATAGTAAAGA
1 AATTTTTTAATAGTAAAAA
7797674 AAT
1 AAT
7797677 CATTGAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AATTTTTTAATAGTAAAAA
Found at i:7798745 original size:21 final size:23
Alignment explanation
Indices: 7798721--7798769 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
7798711 TTTATTTATT
7798721 TAAAATA-TATTTTTA-AAAATA
1 TAAAATAGTATTTTTATAAAATA
*
7798742 TAAAA-AGTATTTTTATATAATA
1 TAAAATAGTATTTTTATAAAATA
7798764 TAAAAT
1 TAAAAT
7798770 TTATAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAAATAGTATTTTTATAAAATA
Found at i:7813000 original size:2 final size:2
Alignment explanation
Indices: 7812993--7813022 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7812983 TTTTGAGGGG
7812993 CT CT CT CT CT C- CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
7813023 AAGACGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:7817929 original size:20 final size:21
Alignment explanation
Indices: 7817886--7817934 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7817876 CCAGCTCCAA
*
7817886 GTGTGACGACTTTTGAACCTT
1 GTGTGAAGACTTTTGAACCTT
*
7817907 GTGTGAAGACTTTTG-AGCTT
1 GTGTGAAGACTTTTGAACCTT
7817927 GTGTGAAG
1 GTGTGAAG
7817935 GCTAGATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.37
Consensus pattern (21 bp):
GTGTGAAGACTTTTGAACCTT
Found at i:7822004 original size:34 final size:34
Alignment explanation
Indices: 7821942--7822029 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 34
7821932 TTTTAATATC
* *
7821942 ATATATTTTA-TTTTTATTTCTTATTATAATCTT
1 ATATATTTTATTTTTTATTTTTTAATATAATCTT
*
7821975 ATATATTTTATTTTTTATTTTTTAATATAATTTT
1 ATATATTTTATTTTTTATTTTTTAATATAATCTT
* * *
7822009 TTATATTATATATTTTATTTT
1 ATATATTTTATTTTTTATTTT
7822030 ATTTTTTTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 10 0.21
34 38 0.79
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.69
Consensus pattern (34 bp):
ATATATTTTATTTTTTATTTTTTAATATAATCTT
Found at i:7822074 original size:30 final size:29
Alignment explanation
Indices: 7822026--7822096 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 29
7822016 ATATATTTTA
* *
7822026 TTTTATTTTT-TTTGCTTATCATTTAAATTT
1 TTTTATTTTTAATTGCTTAT-A-TTAAATAT
*
7822056 TTTTATTTTTAATT-CTTATATTATATAT
1 TTTTATTTTTAATTGCTTATATTAAATAT
7822084 TTTTA-TTTTAATT
1 TTTTATTTTTAATT
7822097 ATAATATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.22
28 11 0.30
29 1 0.03
30 15 0.41
31 2 0.05
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (29 bp):
TTTTATTTTTAATTGCTTATATTAAATAT
Found at i:7822086 original size:27 final size:27
Alignment explanation
Indices: 7821929--7822105 Score: 72
Period size: 27 Copynumber: 6.7 Consensus size: 27
7821919 CTCTTAAATA
* *
7821929 TATTTTTAATATCATATATTTTAT-TTT
1 TATTTTTAAT-TCTTATATTATATATTT
* * *
7821956 TATTTCTT-ATTATAATCTTATATATTT
1 TATTT-TTAATTCTTATATTATATATTT
* * *
7821983 TATTTTTTATT-TT-T-TAATATAATT
1 TATTTTTAATTCTTATATTATATATTT
* *
7822007 T-TTTAT-ATT-ATATATT-T-TATTT
1 TATTTTTAATTCTTATATTATATATTT
* * *
7822029 TATTTTTT-TTGCTTATCATTTAAATTTTTT
1 TATTTTTAATT-CTTAT-A-TTATA-TATTT
7822059 TATTTTTAATTCTTATATTATATATTT
1 TATTTTTAATTCTTATATTATATATTT
* *
7822086 T-TATTTTAATTATAATATTA
1 TAT-TTTTAATTCTTATATTA
7822106 CAAAATATTT
Statistics
Matches: 113, Mismatches: 21, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
22 9 0.08
23 12 0.11
24 10 0.09
25 4 0.04
26 13 0.12
27 40 0.35
28 6 0.05
29 1 0.01
30 16 0.14
31 2 0.02
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (27 bp):
TATTTTTAATTCTTATATTATATATTT
Found at i:7822087 original size:22 final size:20
Alignment explanation
Indices: 7822059--7822104 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
7822049 TAAATTTTTT
7822059 TATTTTTAATTCTTATATTAT-A
1 TATTTTT-ATT-TTA-ATTATAA
7822081 TATTTTTATTTTAATTATAA
1 TATTTTTATTTTAATTATAA
7822101 TATT
1 TATT
7822105 ACAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.22
20 8 0.35
21 3 0.13
22 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTTATTTTAATTATAA
Found at i:7827774 original size:26 final size:26
Alignment explanation
Indices: 7827744--7827795 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7827734 TGGTATTTTT
* * *
7827744 TTTCCGACGGGATTTTCCGTTGGAAA
1 TTTCCAACGGGATGTTCCGTCGGAAA
*
7827770 TTTCCAACGGTATGTTCCGTCGGAAA
1 TTTCCAACGGGATGTTCCGTCGGAAA
7827796 AGAATTTCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (26 bp):
TTTCCAACGGGATGTTCCGTCGGAAA
Found at i:7840441 original size:44 final size:44
Alignment explanation
Indices: 7840376--7840459 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
7840366 CTTTCAATAT
*
7840376 AAAGACTTGTTTCTTTCCATAATATGACTCTTCAAATAGTATGA
1 AAAGACTTATTTCTTTCCATAATATGACTCTTCAAATAGTATGA
* * * *
7840420 AAAGATTTATTTCTTTTCATAATATTATTCTTCAAATAGT
1 AAAGACTTATTTCTTTCCATAATATGACTCTTCAAATAGT
7840460 TTGTTTCCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (44 bp):
AAAGACTTATTTCTTTCCATAATATGACTCTTCAAATAGTATGA
Found at i:7845489 original size:43 final size:43
Alignment explanation
Indices: 7845444--7845525 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
7845434 TTTCTCAATA
* *
7845444 AAAAACTTAT-TTCCTTTCATAATATCACTCTTT-AAATAGCAT
1 AAAAACATATGTTCCTTTCATAATATAACT-TTTCAAATAGCAT
*
7845486 AAAAACATATGTTTCTTTCATAATATAACTTTTCAAATAG
1 AAAAACATATGTTCCTTTCATAATATAACTTTTCAAATAG
7845526 TTGTTTCCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 12 0.34
43 23 0.66
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (43 bp):
AAAAACATATGTTCCTTTCATAATATAACTTTTCAAATAGCAT
Found at i:7851227 original size:15 final size:15
Alignment explanation
Indices: 7851207--7851246 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
7851197 CGATAATTTC
7851207 TTCTTTGTTTTTTAG
1 TTCTTTGTTTTTTAG
7851222 TTCTTTGTTTTTTAG
1 TTCTTTGTTTTTTAG
7851237 TTCTTTGTTT
1 TTCTTTGTTT
7851247 AATTTACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.05, C:0.07, G:0.12, T:0.75
Consensus pattern (15 bp):
TTCTTTGTTTTTTAG
Found at i:7851788 original size:116 final size:111
Alignment explanation
Indices: 7851602--7851843 Score: 281
Period size: 116 Copynumber: 2.1 Consensus size: 111
7851592 AATAAAATAT
* * * * *
7851602 TAATATTTTAAATTATAAATAAAATAATAATTTTTAATTTTTAATTATTAATAAAATAAATTATA
1 TAATA-TTTAAATTATAAATAAAATAATAATATTAAATTATCAATTATTAATAAAATAAATTACA
* *
7851667 AATTATTACTATTTAAA-AATAAAATAAATTAAATATAAATAAGCATAA
65 AATTATTAATATTTAAAGAATAAAATAAAATAAA-A-AAATAAGCATAA
* *
7851715 TAA-ATTTAAATTATATATAAAATATTAATAATTAAATTATCAATTATTAATATTTTAAATAAAT
1 TAATATTTAAATTATAAATAAAATAATAAT-ATTAAATTATCAATTATTAATA----AAATAAAT
* * **
7851779 TACCAATTATTAATATTTAAAGAATAAAATAAAATAAAAAATTAATTATAA
61 TACAAATTATTAATATTTAAAGAATAAAATAAAATAAAAAAATAAGCATAA
7851830 TAATATTTAAATTA
1 TAATATTTAAATTA
7851844 AATAATATGT
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
111 23 0.21
112 19 0.17
113 3 0.03
115 12 0.11
116 37 0.34
117 15 0.14
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (111 bp):
TAATATTTAAATTATAAATAAAATAATAATATTAAATTATCAATTATTAATAAAATAAATTACAA
ATTATTAATATTTAAAGAATAAAATAAAATAAAAAAATAAGCATAA
Found at i:7851953 original size:123 final size:115
Alignment explanation
Indices: 7851732--7852055 Score: 357
Period size: 114 Copynumber: 2.7 Consensus size: 115
7851722 AAATTATATA
* * * * ** *
7851732 TAAAATATTAATAATTAAATTATCAATTATTAATATT-TTAAATAAATTACCAATTATTAATATT
1 TAAAATATTAATGATTAAATTAT-AAATA-AAATATTAATATTTAAATTATCAATTATTAATATT
*
7851796 TAAAGAATAAAATAAAATAAAAAATTAATTATAATAATATTTAAATTAAATAATATGTTAGTTTT
64 T-----A-AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAA-A----A---TT
7851861 T
115 T
7851862 TAAAATATTAATGATTAAATTATAAATAAAATATTAATATTTAAATTATCAATTATTAATATTTA
1 TAAAATATTAATGATTAAATTATAAATAAAATATTAATATTTAAATTATCAATTATTAATATTTA
7851927 AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAAAATTT
66 AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAAAATTT
* * * *
7851977 TAAAAT-TTTATGATTAAATTATAAATAAAATATTAATATTGAAATTATTAGTTATTAATATTTT
1 TAAAATATTAATGATTAAATTATAAATAAAATATTAATATTTAAATTATCAATTATTAATA-TTT
*
7852041 AAAAAT-TAATAAAAA
65 AAAAATAAAATAAAAA
7852056 TAAGTAATCA
Statistics
Matches: 179, Mismatches: 13, Indels: 20
0.84 0.06 0.09
Matches are distributed among these distances:
114 58 0.32
115 18 0.10
118 1 0.01
122 1 0.01
123 44 0.25
124 1 0.01
128 6 0.03
129 28 0.16
130 22 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (115 bp):
TAAAATATTAATGATTAAATTATAAATAAAATATTAATATTTAAATTATCAATTATTAATATTTA
AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAAAATTT
Found at i:7852013 original size:114 final size:119
Alignment explanation
Indices: 7851804--7852055 Score: 363
Period size: 114 Copynumber: 2.1 Consensus size: 119
7851794 TTTAAAGAAT
*
7851804 AAAATAAAATAAAAAATTAATTATAATAATATTTAAATTAAATAATATGTTAGTTTTTTAAAATA
1 AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAATA---TA--TTTTTAAAATA
*
7851869 TTAATGATTAAATTATAAATAAAATATTAATATTTAAATTATCAATTATTAATA-TTTA
61 TTAATGATTAAATTATAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTA
*
7851927 AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAA-A-A-TTTTAAAAT-TTTAT
1 AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAATATATTTTTAAAATATTAAT
* *
7851988 GATTAAATTATAAATAAAATATTAATATTGAAATTATTAGTTATTAATATTTTA
66 GATTAAATTATAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTA
*
7852042 AAAAT-TAATAAAAA
1 AAAATAAAATAAAAA
7852056 TAAGTAATCA
Statistics
Matches: 122, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
114 58 0.48
115 18 0.15
118 1 0.01
122 1 0.01
123 44 0.36
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (119 bp):
AAAATAAAATAAAAAATTAATCATAATAATATTTAAATTAAATAATATATTTTTAAAATATTAAT
GATTAAATTATAAATAAAATATTAATATTGAAATTATCAATTATTAATATTTTA
Found at i:7880878 original size:28 final size:27
Alignment explanation
Indices: 7880847--7881136 Score: 75
Period size: 28 Copynumber: 10.7 Consensus size: 27
7880837 TATGACATTA
*
7880847 AAAATATATTTAAAATATGATATTATAT
1 AAAATATATATAAAATATGA-ATTATAT
*
7880875 AAAAT-TAATAATAAAATAT-AAATATATT
1 AAAATAT-AT-ATAAAATATGAATTATA-T
* *
7880903 AAAATAACATATAAAATAT-AATAATAT
1 AAAAT-ATATATAAAATATGAATTATAT
7880930 AATAA-A-A-A-AAAATAATGACA-T-TA-
1 AA-AATATATATAAAAT-ATGA-ATTATAT
7880953 AAAATATAT-TAAAAATATGATATTATAT
1 AAAATATATAT-AAAATATGA-ATTATAT
* *
7880981 AAAAATTTAATATCATAAATAT-ACATAATA-
1 -AAAATAT-ATAT-A-AAATATGA-ATTATAT
* *
7881011 ATAAATAAAATATAAAATATTATAATTA-AT
1 A-AAAT-ATATATAAAATA-T-GAATTATAT
* * *
7881041 -AAATA-AAAAATAAATAT-AATGATAT
1 AAAATATATATA-AAATATGAATTATAT
*
7881066 AAAATATATTTAAGAA-ATGATATTATAT
1 AAAATATATATAA-AATATGA-ATTATAT
* *
7881094 AAAAT-TAATAAAAAATAT-AAATATATT
1 AAAATAT-ATATAAAATATGAATTATA-T
*
7881121 AAAA-ATA-AAAAAATAT
1 AAAATATATATAAAATAT
7881137 TATACATAAT
Statistics
Matches: 200, Mismatches: 24, Indels: 79
0.66 0.08 0.26
Matches are distributed among these distances:
22 2 0.01
23 8 0.04
24 10 0.05
25 18 0.09
26 26 0.13
27 32 0.16
28 56 0.28
29 20 0.10
30 13 0.06
31 9 0.05
32 6 0.03
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATATATATAAAATATGAATTATAT
Found at i:7880919 original size:22 final size:21
Alignment explanation
Indices: 7880878--7880931 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
7880868 ATTATATAAA
7880878 ATTAATAATAAAATATAAATAT
1 ATTAA-AATAAAATATAAATAT
*
7880900 ATTAAAATAACATATAAAATAT
1 ATTAAAATAAAATAT-AAATAT
* *
7880922 AATAATATAA
1 ATTAAAATAA
7880932 TAAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 9 0.32
22 19 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAAAATAAAATATAAATAT
Found at i:7880953 original size:106 final size:105
Alignment explanation
Indices: 7880838--7881221 Score: 420
Period size: 109 Copynumber: 3.6 Consensus size: 105
7880828 TCAAAATCAT
7880838 ATGACATTAAAAATATATTTAAAATATGATATTATAT-AAAATTAATAATAAAATATAAATATAT
1 ATGACATTAAAAATATATTTAAAA-ATGATATTATATAAAAATTAATAATAAAATATAAATATAT
*
7880902 TAAAATAACATATAAAATATAATAATATAATAAAAAAAAATA
65 TAAAATAA-ATATAAAATATTATAATATAATAAAAAAAAATA
* *
7880944 ATGACATTAAAAATATATTAAAAATATGATATTATATAAAAATTTAAT-ATCATAAATATACATA
1 ATGACATTAAAAATATATTTAAAA-ATGATATTATATAAAAA-TTAATAAT-A-AAATATAAATA
*
7881008 -ATAATAAATAAAATATAAAATATTATAAT-TAATAAATAAAAAATAA
62 TATTA-AAAT-AAATATAAAATATTATAATATAATAAA-AAAAAAT-A
*
7881054 AT-ATAATGATATAAAATATATTTAAGAAATGATATTATAT-AAAATTAATAA-AAAATATAAAT
1 ATGA-CAT--TA-AAAATATATTTAA-AAATGATATTATATAAAAATTAATAATAAAATATAAAT
* * *
7881116 ATATTAAAA-ATAA-A-AAAATATTAT-ACATAAT-ATAAAATAT-
61 ATATTAAAATA-AATATAAAATATTATAATATAATAAAAAAAAATA
* * *
7881156 ATGATATT-AACATATATTT-AAAATGATATTATATAAAAATTAATAAAAAAATATAAATATATT
1 ATGACATTAAAAATATATTTAAAAATGATATTATATAAAAATTAATAATAAAATATAAATATATT
7881219 AAA
66 AAA
7881222 CTTATATTTT
Statistics
Matches: 245, Mismatches: 13, Indels: 48
0.80 0.04 0.16
Matches are distributed among these distances:
96 14 0.06
97 12 0.05
98 29 0.12
100 1 0.00
102 4 0.02
103 1 0.00
104 6 0.02
105 2 0.01
106 50 0.20
107 8 0.03
108 18 0.07
109 51 0.21
110 11 0.04
111 5 0.02
112 7 0.03
113 24 0.10
114 2 0.01
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (105 bp):
ATGACATTAAAAATATATTTAAAAATGATATTATATAAAAATTAATAATAAAATATAAATATATT
AAAATAAATATAAAATATTATAATATAATAAAAAAAAATA
Found at i:7881035 original size:21 final size:20
Alignment explanation
Indices: 7880997--7881074 Score: 56
Period size: 21 Copynumber: 3.8 Consensus size: 20
7880987 TTAATATCAT
7880997 AAATATACATAATA-ATAAATA
1 AAATATA-A-AATATATAAATA
*
7881018 AAATATAAAATATTATAATTA
1 AAATATAAAATA-TATAAATA
7881039 ATAA-ATAAAA-A-ATAAATA
1 A-AATATAAAATATATAAATA
7881057 TAATGATATAAAATATAT
1 -AA--ATATAAAATATAT
7881075 TTAAGAAATG
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
18 7 0.15
19 5 0.11
20 3 0.07
21 26 0.57
22 3 0.07
23 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (20 bp):
AAATATAAAATATATAAATA
Found at i:7881053 original size:42 final size:44
Alignment explanation
Indices: 7880977--7881072 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 44
7880967 ATATGATATT
* *
7880977 ATATAAAA-ATTTAATATCATAAATATACATAATAATAAATAA-A
1 ATATAAAATATTTAATATAATAAATATACAAAATAA-AAATAATA
* *
7881020 ATATAAAATATTATAAT-TAATAAATA-A-AAAATAAATATAATG
1 ATATAAAATATT-TAATATAATAAATATACAAAATAAAAATAATA
7881062 ATATAAAATAT
1 ATATAAAATAT
7881073 ATTTAAGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 5 0.11
42 17 0.37
43 9 0.20
44 11 0.24
45 4 0.09
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (44 bp):
ATATAAAATATTTAATATAATAAATATACAAAATAAAAATAATA
Found at i:7881094 original size:113 final size:105
Alignment explanation
Indices: 7880847--7881221 Score: 402
Period size: 106 Copynumber: 3.6 Consensus size: 105
7880837 TATGACATTA
*
7880847 AAAATATATTTAAAATATGATATTATATAAAATTAATAATAAAATATAAATATATTAAAATAACA
1 AAAATATATTTAAAATATGATATTATATAAAATTAATAAT-AAATATAAATATATT-AAATAAAA
* *
7880912 TATAAAATATAATAAT-ATAATAAAAA-AAA-ATAATGACATT
64 TATAAAATATTATAATAATAATAAAAATAAATATAATGATA-T
* * *
7880952 AAAAATATATTAAAAATATGATATTATATAAAAATTTAATATCATAAATATACATAATAATAAAT
1 -AAAATATATTTAAAATATGATATTATAT-AAAA-TTAATA--ATAAATATAAAT-ATATTAAAT
7881017 AAAATATAAAATATTATAATTAATAAATAAAAAATAAATATAATGATAT
60 AAAATATAAAATATTATAA-TAAT-AAT-AAAAATAAATATAATGATAT
*
7881066 AAAATATATTTAAGAA-ATGATATTATATAAAATTAATAAAAAATATAAATATATTAAA-AATAA
1 AAAATATATTTAA-AATATGATATTATATAAAATTAATAATAAATATAAATATATTAAATAA-AA
*
7881129 -A-AAAATATTATACATAAT-AT-AAAAT--ATATGAT-AT-T
64 TATAAAATATTATA-ATAATAATAAAAATAAATATAATGATAT
* *
7881164 AACATATATTT-AAA-ATGATATTATATAAAAATTAATAAAAAAATATAAATATATTAAA
1 AAAATATATTTAAAATATGATATTATAT-AAAATTAAT-AATAAATATAAATATATTAAA
7881222 CTTATATTTT
Statistics
Matches: 241, Mismatches: 12, Indels: 40
0.82 0.04 0.14
Matches are distributed among these distances:
96 14 0.06
97 10 0.04
98 32 0.13
99 2 0.01
100 6 0.02
102 5 0.02
104 2 0.01
106 42 0.17
107 8 0.03
108 15 0.06
109 40 0.17
110 7 0.03
111 8 0.03
112 7 0.03
113 29 0.12
114 6 0.02
115 8 0.03
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (105 bp):
AAAATATATTTAAAATATGATATTATATAAAATTAATAATAAATATAAATATATTAAATAAAATA
TAAAATATTATAATAATAATAAAAATAAATATAATGATAT
Found at i:7881109 original size:26 final size:26
Alignment explanation
Indices: 7881062--7881205 Score: 69
Period size: 26 Copynumber: 5.7 Consensus size: 26
7881052 AAATATAATG
* *
7881062 ATATAAAATATATTTAAGAAATGATATT
1 ATATAAAAT-TA-ATAAAAAATGATATT
*
7881090 ATATAAAATTAATAAAAAAT-ATAAAT
1 ATATAAAATTAATAAAAAATGAT-ATT
*
7881116 ATATTAAA--AATAAAAAA--ATATT
1 ATATAAAATTAATAAAAAATGATATT
* *
7881138 ATACATAA-T-ATAAAATATATGATATT
1 ATATAAAATTAATAAAA-A-ATGATATT
* *
7881164 A-ACATATATT--T--AAAATGATATT
1 ATATA-AAATTAATAAAAAATGATATT
7881186 ATATAAAAATTAATAAAAAA
1 ATAT-AAAATTAATAAAAAA
7881206 ATATAAATAT
Statistics
Matches: 90, Mismatches: 12, Indels: 29
0.69 0.09 0.22
Matches are distributed among these distances:
22 22 0.24
23 9 0.10
24 13 0.14
25 6 0.07
26 24 0.27
27 7 0.08
28 9 0.10
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (26 bp):
ATATAAAATTAATAAAAAATGATATT
Found at i:7881124 original size:17 final size:17
Alignment explanation
Indices: 7881104--7881221 Score: 58
Period size: 17 Copynumber: 7.2 Consensus size: 17
7881094 AAAATTAATA
7881104 AAAAATATAAATATATT
1 AAAAATATAAATATATT
* *
7881121 AAAAATAAAAAAATATT
1 AAAAATATAAATATATT
7881138 ATACATAATATAAA-ATA-T
1 A-A-A-AATATAAATATATT
**
7881156 -ATGATATTAACATATATT
1 AAAAATA-TAA-ATATATT
* *
7881174 TAAAATGAT-ATTATA-T
1 AAAAAT-ATAAATATATT
7881190 AAAAAT-T-AATA-A--
1 AAAAATATAAATATATT
7881202 AAAAATATAAATATATT
1 AAAAATATAAATATATT
7881219 AAA
1 AAA
7881222 CTTATATTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 28
0.67 0.09 0.24
Matches are distributed among these distances:
12 6 0.08
13 2 0.03
14 11 0.14
15 4 0.05
16 8 0.10
17 26 0.34
18 4 0.05
19 8 0.10
20 8 0.10
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAAATATAAATATATT
Found at i:7881151 original size:28 final size:26
Alignment explanation
Indices: 7881007--7881152 Score: 71
Period size: 32 Copynumber: 5.0 Consensus size: 26
7880997 AAATATACAT
*
7881007 AATAATAAATAAAATATAAAATATTATAATT
1 AATAAT-AA-AAAATAT-AAATA-TATAA-A
7881038 AATAAATAAAAAATAAATATAATGATATAAA
1 AAT-AATAAAAAAT--ATA-AAT-ATATAAA
* * *
7881069 ATATATTTAAGAAATGAT-ATTATATAAA
1 A-ATA-ATAAAAAAT-ATAAATATATAAA
*
7881097 ATTAATAAAAAATATAAATATATTAAA
1 AATAATAAAAAATATAAATATA-TAAA
*
7881124 AATAA-AAAAATATTATACATAATATAAA
1 AATAATAAAAA-A-TATAAAT-ATATAAA
7881152 A
1 A
7881153 TATATGATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 27
0.71 0.08 0.21
Matches are distributed among these distances:
25 2 0.02
26 17 0.18
27 11 0.12
28 19 0.21
29 5 0.05
30 5 0.05
31 10 0.11
32 22 0.24
33 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (26 bp):
AATAATAAAAAATATAAATATATAAA
Found at i:7881152 original size:19 final size:19
Alignment explanation
Indices: 7881097--7881155 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 19
7881087 ATTATATAAA
*
7881097 ATTAATAAAAAATATAAATAT
1 ATTAA-AAATAATATAAA-AT
7881118 ATTAAAAATAA-A-AAAAT
1 ATTAAAAATAATATAAAAT
* *
7881135 ATTATACATAATATAAAAT
1 ATTAAAAATAATATAAAAT
7881154 AT
1 AT
7881156 ATGATATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 11 0.33
18 4 0.12
19 8 0.24
20 5 0.15
21 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAAAATAATATAAAAT
Found at i:7882065 original size:16 final size:16
Alignment explanation
Indices: 7882044--7882080 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7882034 AAGATAAAAT
7882044 TTAAAAAT-TTTATAA
1 TTAAAAATATTTATAA
*
7882059 TTAAAAATATTTCTAA
1 TTAAAAATATTTATAA
7882075 TTAAAA
1 TTAAAA
7882081 TCATCTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAAAAATATTTATAA
Found at i:7898823 original size:2 final size:2
Alignment explanation
Indices: 7898818--7898846 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7898808 TTAAAAAATG
7898818 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7898847 CTTACTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7914513 original size:21 final size:21
Alignment explanation
Indices: 7914487--7914591 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
7914477 GTTTGGAGTT
*
7914487 TCGATTCAACAAATTTCAAAA
1 TCGATTCAACAAATTTTAAAA
*
7914508 TCGATTCATCAAATTTTAAAA
1 TCGATTCAACAAATTTTAAAA
** * **
7914529 TTAATTTAGTAAATTTTAAAA
1 TCGATTCAACAAATTTTAAAA
*
7914550 TCGATTTATA-AAA-TTTAAAA
1 TCGATTCA-ACAAATTTTAAAA
* * * *
7914570 TCAATTCATCAAACTATAAAA
1 TCGATTCAACAAATTTTAAAA
7914591 T
1 T
7914592 TAATTCACAA
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
20 16 0.24
21 51 0.76
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (21 bp):
TCGATTCAACAAATTTTAAAA
Found at i:7914564 original size:42 final size:41
Alignment explanation
Indices: 7914497--7914575 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 41
7914487 TCGATTCAAC
* *
7914497 AAATTTCAAAATCGATTCATCAAATTTTAAAATTAATTTAGT
1 AAATTTCAAAATCGATTCAT-AAAATTTAAAATCAATTTAGT
* *
7914539 AAATTTTAAAATCGATTTATAAAATTTAAAATCAATT
1 AAATTTCAAAATCGATTCATAAAATTTAAAATCAATT
7914576 CATCAAACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 15 0.45
42 18 0.55
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.41
Consensus pattern (41 bp):
AAATTTCAAAATCGATTCATAAAATTTAAAATCAATTTAGT
Found at i:7914671 original size:20 final size:21
Alignment explanation
Indices: 7914610--7914672 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
7914600 AAAATCTTGG
*
7914610 AATTGATTTATCAAACCTTA-A
1 AATTGATTAAT-AAACCTTATA
**
7914631 AATTGATTTTTAAATCC-TATA
1 AATTGATTAATAAA-CCTTATA
7914652 AA-TGATTAATAAACCTTATA
1 AATTGATTAATAAACCTTATA
7914672 A
1 A
7914673 TAGATTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 2 0.06
20 19 0.53
21 15 0.42
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.40
Consensus pattern (21 bp):
AATTGATTAATAAACCTTATA
Found at i:7926562 original size:3 final size:3
Alignment explanation
Indices: 7926554--7926579 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7926544 AAAATTCAAT
7926554 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7926580 TAGCATGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7930462 original size:3 final size:3
Alignment explanation
Indices: 7930454--7930488 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
7930444 AATATATCGG
*
7930454 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7930489 GAAAAATTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7930867 original size:7 final size:7
Alignment explanation
Indices: 7930855--7930881 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7930845 ACAATTTTAA
7930855 TTTACTC
1 TTTACTC
7930862 TTTACTC
1 TTTACTC
7930869 TTTACTC
1 TTTACTC
7930876 TTTACT
1 TTTACT
7930882 GCATGCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTACTC
Found at i:7935809 original size:36 final size:36
Alignment explanation
Indices: 7935762--7935834 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
7935752 CAGGTAGTTC
7935762 AGCTTTTCTTATTCCTTTCTTCTGTTTGTTTAATCT
1 AGCTTTTCTTATTCCTTTCTTCTGTTTGTTTAATCT
7935798 AGCTTTTCTTATTCCTTTCTTCTGTTTGTTTAATCT
1 AGCTTTTCTTATTCCTTTCTTCTGTTTGTTTAATCT
7935834 A
1 A
7935835 AGTTATTGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.12, C:0.19, G:0.08, T:0.60
Consensus pattern (36 bp):
AGCTTTTCTTATTCCTTTCTTCTGTTTGTTTAATCT
Found at i:7946917 original size:8 final size:8
Alignment explanation
Indices: 7946904--7946933 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7946894 TGGTGTTTTG
7946904 CTCTCTGT
1 CTCTCTGT
7946912 CTCTCTGT
1 CTCTCTGT
*
7946920 CTCCCTGT
1 CTCTCTGT
7946928 CTCTCT
1 CTCTCT
7946934 CATTTTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.43, G:0.10, T:0.47
Consensus pattern (8 bp):
CTCTCTGT
Found at i:7947521 original size:3 final size:3
Alignment explanation
Indices: 7947513--7947546 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7947503 ATAGCATGCT
7947513 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
7947547 GATCTTGTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:7955125 original size:47 final size:47
Alignment explanation
Indices: 7955071--7955163 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
7955061 AAAATTTGTA
7955071 CTGTCCTGCAATTGCAGACATTCAACCATGCAAGATGTAAGACTCAG
1 CTGTCCTGCAATTGCAGACATTCAACCATGCAAGATGTAAGACTCAG
* *
7955118 CTGTCCTGCAGTTGCAGACATTCAACTATGCAAGATGTAAGACTCA
1 CTGTCCTGCAATTGCAGACATTCAACCATGCAAGATGTAAGACTCA
7955164 AGGGTTAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (47 bp):
CTGTCCTGCAATTGCAGACATTCAACCATGCAAGATGTAAGACTCAG
Found at i:7955563 original size:66 final size:66
Alignment explanation
Indices: 7955455--7955588 Score: 189
Period size: 66 Copynumber: 2.0 Consensus size: 66
7955445 ACTGAGTACA
* *
7955455 CATCTGACAATAACCAGAAAGCAAAAATCAATCAGCATGAGATGAAAGCTCAACAACAGTTTCAT
1 CATCTGACAATAACCAGAAAGCAAAAATCAAGCAGCACGAGATGAAAGCTCAACAACAGTTTCAT
7955520 C
66 C
* * * * *
7955521 CATCTGACAGA-AACCAGAAAGTAAAAATCTAGCAGCACGAGATGAGAGCTCAGCGACAGTTTCA
1 CATCTGACA-ATAACCAGAAAGCAAAAATCAAGCAGCACGAGATGAAAGCTCAACAACAGTTTCA
7955585 TC
65 TC
7955587 CA
1 CA
7955589 ACCCATCACC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 59 0.98
67 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (66 bp):
CATCTGACAATAACCAGAAAGCAAAAATCAAGCAGCACGAGATGAAAGCTCAACAACAGTTTCAT
C
Found at i:7977365 original size:2 final size:2
Alignment explanation
Indices: 7977360--7977401 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
7977350 ATGAAAAAAA
*
7977360 GT GT GT GT GT GT GT GT GT GT GT GT GC GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
7977402 AGAGAGAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.02, G:0.50, T:0.48
Consensus pattern (2 bp):
GT
Found at i:7993500 original size:49 final size:49
Alignment explanation
Indices: 7993428--7993526 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
7993418 GATGTAAGGA
* *
7993428 AATCACTTGAACTATTTGATCAAATGGTTATAGGTGGTATTCAACCTAC
1 AATCACTTGAACTAATTGATCAAATGGTTACAGGTGGTATTCAACCTAC
* *
7993477 AATCACTTGAACTAATTGATCAAATGGTTGCATGTGGTATTCAACCTAC
1 AATCACTTGAACTAATTGATCAAATGGTTACAGGTGGTATTCAACCTAC
7993526 A
1 A
7993527 GAGACTACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (49 bp):
AATCACTTGAACTAATTGATCAAATGGTTACAGGTGGTATTCAACCTAC
Found at i:8009736 original size:20 final size:21
Alignment explanation
Indices: 8009711--8009749 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8009701 GACAAAAAAA
8009711 GAACAAATAAGA-TAAGAGCC
1 GAACAAATAAGAGTAAGAGCC
*
8009731 GAACAATTAAGAGTAAGAG
1 GAACAAATAAGAGTAAGAG
8009750 AATTTTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.54, C:0.10, G:0.23, T:0.13
Consensus pattern (21 bp):
GAACAAATAAGAGTAAGAGCC
Found at i:8021449 original size:25 final size:26
Alignment explanation
Indices: 8021431--8021518 Score: 60
Period size: 29 Copynumber: 3.3 Consensus size: 26
8021421 AAAATAAATA
8021431 TATAATATAAGAATAAAAATTAAA-A
1 TATAATATAAGAATAAAAATTAAATA
*
8021456 TA-AA-ATAAAATATAAAAAATTAATATTA
1 TATAATATAAGA-AT-AAAAATTAA-A-TA
*
8021484 TATAATAT-AGATAAAACAAATTAAA-A
1 TATAATATAAGA-ATAA-AAATTAAATA
*
8021510 TAAAATATA
1 TATAATATA
8021519 TAATATAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
23 5 0.10
24 4 0.08
25 11 0.22
26 9 0.18
28 6 0.12
29 13 0.26
30 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (26 bp):
TATAATATAAGAATAAAAATTAAATA
Found at i:8021477 original size:56 final size:56
Alignment explanation
Indices: 8021427--8021531 Score: 155
Period size: 54 Copynumber: 1.9 Consensus size: 56
8021417 AATTAAAATA
*
8021427 AATATATAATATAAGA-ATAA-AAATTAAAATAAAATA-A-AATATAAAAAATTAAT
1 AATATATAATAT-AGATAAAACAAATTAAAATAAAATATATAATATAAAAAATTAAT
*
8021480 ATTATATAATATAGATAAAACAAATTAAAATAAAATATATAATATAAAAAAT
1 AATATATAATATAGATAAAACAAATTAAAATAAAATATATAATATAAAAAAT
8021532 ATATTAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
52 3 0.07
53 14 0.30
54 16 0.35
55 1 0.02
56 12 0.26
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.30
Consensus pattern (56 bp):
AATATATAATATAGATAAAACAAATTAAAATAAAATATATAATATAAAAAATTAAT
Found at i:8021530 original size:21 final size:21
Alignment explanation
Indices: 8021506--8021795 Score: 65
Period size: 21 Copynumber: 13.3 Consensus size: 21
8021496 AAAACAAATT
8021506 AAAATAAAATATATAATATAA
1 AAAATAAAATATATAATATAA
* * * *
8021527 AAAAT-ATAT-TAAAAAAT-G
1 AAAATAAAATATATAATATAA
8021545 AAAATAAAATATATGACAT-TAAA
1 AAAATAAAATATAT-A-ATAT-AA
8021568 AATATATTAAAAATATGATATTATATAA
1 AA-A-A-T-AAAATAT-ATA--ATATAA
*
8021596 AAATTAATAATATA-AATATAA
1 AAAATAA-AATATATAATATAA
* *
8021617 ATATATTAAAA-ATAAAATATAA
1 A-A-AATAAAATATATAATATAA
* *
8021639 AATATTATAATA-ATAA-AT-A
1 AA-AATAAAATATATAATATAA
8021658 AAAATAAAATATATGACAT-TAA
1 AAAATAAAATATAT-A-ATATAA
* *
8021680 AAATATATTTAAGAAATGATATTATATA
1 AAA-ATA---AA-ATAT-ATAATATA-A
8021708 AAAATTAATAATATA-AATATAA
1 AAAA-TAA-AATATATAATATAA
*
8021730 ATATATTAAAA-ATA-AATAT--
1 A-A-AATAAAATATATAATATAA
**
8021749 AAAATATTATA-ATAATA-AA
1 AAAATAAAATATATAATATAA
* *
8021768 TAAAATAAAATATATGATATTA
1 -AAAATAAAATATATAATATAA
8021790 AAAATA
1 AAAATA
8021796 TATTTAAAAA
Statistics
Matches: 201, Mismatches: 26, Indels: 84
0.65 0.08 0.27
Matches are distributed among these distances:
17 5 0.02
18 18 0.09
19 15 0.07
20 17 0.08
21 49 0.24
22 22 0.11
23 20 0.10
24 6 0.03
25 11 0.05
26 5 0.02
27 16 0.08
28 16 0.08
29 1 0.00
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAATAAAATATATAATATAA
Found at i:8021536 original size:54 final size:51
Alignment explanation
Indices: 8021421--8021537 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 51
8021411 TATTATAATT
* *
8021421 AAAATA-AATATATAATATAAGAATAAAAATTAAAATAAAATAAAATATAA
1 AAAATATATTATATAATATAAGAAAAAAAATTAAAATAAAATAAAATATAA
8021471 AAAATTAATATTATATAATAT-AGATAAAACAAATTAAAATAAAATATATAATATAA
1 AAAA-T-ATATTATATAATATAAGA-AAAA-AAATTAAAATAAAATA-A-AATATAA
8021527 AAAATATATTA
1 AAAATATATTA
8021538 AAAAATGAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
50 4 0.07
51 1 0.02
52 4 0.07
53 14 0.24
54 22 0.38
55 2 0.03
56 11 0.19
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.30
Consensus pattern (51 bp):
AAAATATATTATATAATATAAGAAAAAAAATTAAAATAAAATAAAATATAA
Found at i:8021552 original size:54 final size:54
Alignment explanation
Indices: 8021447--8021553 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
8021437 ATAAGAATAA
* * *
8021447 AAATTAAAATAAAATAAAATATAAAAAATTAATATTATATAATATAGATAAAAC
1 AAATTAAAATAAAATAAAATATAAAAAATTAATATTAAAAAATATAAATAAAAC
8021501 AAATTAAAATAAAATATATAATATAAAAAA-T-ATATTAAAAAATGA-AAATAAAA
1 AAATTAAAATAAAATA-A-AATATAAAAAATTAATATTAAAAAAT-ATAAATAAAA
8021554 TATATGACAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
54 33 0.70
55 3 0.06
56 11 0.23
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (54 bp):
AAATTAAAATAAAATAAAATATAAAAAATTAATATTAAAAAATATAAATAAAAC
Found at i:8021556 original size:39 final size:41
Alignment explanation
Indices: 8021457--8021767 Score: 155
Period size: 39 Copynumber: 7.7 Consensus size: 41
8021447 AAATTAAAAT
* * * * * * *
8021457 AAAATAAAATATAAAAAATTAATATTATATAATATAGATAAA
1 AAAATGAAATATAAAATATT-ATAATATAAAAAATATATTAA
*
8021499 ACAAATTAAA-ATAAAATA-TATAATATAAAAAATATATTAA
1 A-AAATGAAATATAAAATATTATAATATAAAAAATATATTAA
* * *
8021539 AAAATGAAA-ATAAAATA-TATGACATTAAAAATATATTAA
1 AAAATGAAATATAAAATATTATAATATAAAAAATATATTAA
8021578 AAATATGATATTATATAAAA-ATTAATAATATAAATATAAATATATT-A
1 AAA-ATGA-A--ATATAAAATATT-ATAATAT-AA-A-AAATATATTAA
*
8021625 AAAATAAAATATAAAATATTATAATAATAAATAAA-A-A-TAA
1 AAAATGAAATATAAAATATTATAAT-ATAAA-AAATATATTAA
* * * *
8021665 AATATATGACAT-TAAAA-A-TAT-ATTTAAGAAATGATATTAT
1 AA-A-ATGAAATATAAAATATTATAATATAAAAAAT-ATATTAA
*
8021705 ATAA--AAAT-TAATAATA-TA-AATAT---AAATATATT-A
1 AAAATGAAATATAA-AATATTATAATATAAAAAATATATTAA
8021738 AAAAT-AAATATAAAATATTATAATAATAAA
1 AAAATGAAATATAAAATATTATAAT-ATAAA
8021768 TAAAATAAAA
Statistics
Matches: 213, Mismatches: 25, Indels: 64
0.71 0.08 0.21
Matches are distributed among these distances:
33 3 0.01
34 13 0.06
35 9 0.04
36 12 0.06
37 7 0.03
38 10 0.05
39 43 0.20
40 29 0.14
41 9 0.04
42 18 0.08
43 24 0.11
44 12 0.06
45 6 0.03
46 4 0.02
47 5 0.02
48 9 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (41 bp):
AAAATGAAATATAAAATATTATAATATAAAAAATATATTAA
Found at i:8021565 original size:28 final size:28
Alignment explanation
Indices: 8021534--8021793 Score: 102
Period size: 27 Copynumber: 9.3 Consensus size: 28
8021524 TAAAAAATAT
*
8021534 ATTAAAAAATGAAAATAAAATATATGAC
1 ATTAAAAAATAAAAATAAAATATATGAC
* * *
8021562 ATT-AAAAAT-ATATTAAAA-ATATGAT
1 ATTAAAAAATAAAAATAAAATATATGAC
* *
8021587 ATTATATAAAAATTAATAATATAAATATAAAT-AT
1 A-T-TA-AAAAA-TAA-AA-ATAAA-ATATATGAC
8021621 ATT-AAAAATAAAATATAAAATATTAT-A-
1 ATTAAAAAATAAAA-ATAAAATA-TATGAC
*
8021648 A-TAATAAATAAAAATAAAATATATGAC
1 ATTAAAAAATAAAAATAAAATATATGAC
** * * *
8021675 ATTAAAAATATATTTAA-GAAATGATATTAT
1 ATTAAAAA-ATA-AAAATAAAAT-ATATGAC
* * *
8021705 A-TAAAAATTAATAATATAAATATAAAT-AT
1 ATTAAAAAATAA-AA-ATAAA-ATATATGAC
*
8021734 ATT-AAAAATAAATATAAAATATTAT-A-
1 ATTAAAAAATAAAAATAAAATA-TATGAC
* *
8021760 A-TAATAAAT-AAAATAAAATATATGAT
1 ATTAAAAAATAAAAATAAAATATATGAC
8021786 ATTAAAAA
1 ATTAAAAA
8021794 TATATTTAAA
Statistics
Matches: 179, Mismatches: 25, Indels: 57
0.69 0.10 0.22
Matches are distributed among these distances:
24 3 0.02
25 22 0.12
26 28 0.16
27 34 0.19
28 23 0.13
29 32 0.18
30 20 0.11
31 3 0.02
32 2 0.01
33 5 0.03
34 4 0.02
35 3 0.02
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (28 bp):
ATTAAAAAATAAAAATAAAATATATGAC
Found at i:8021615 original size:6 final size:6
Alignment explanation
Indices: 8021604--8021670 Score: 50
Period size: 6 Copynumber: 11.0 Consensus size: 6
8021594 AAAAATTAAT
* *
8021604 AATATA AATATA AATAT- ATTAAA AATA-A AATATAA AATATTA TAATAATA
1 AATATA AATATA AATATA AATATA AATATA AATAT-A AATA-TA -AAT-ATA
*
8021654 AATAAA AATA-A AATATA
1 AATATA AATATA AATATA
8021671 TGACATTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
5 13 0.26
6 21 0.42
7 9 0.18
8 6 0.12
9 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATATA
Found at i:8021728 original size:6 final size:6
Alignment explanation
Indices: 8021717--8021781 Score: 50
Period size: 6 Copynumber: 11.0 Consensus size: 6
8021707 AAAAATTAAT
*
8021717 AATATA AATATA AATAT- -AT-TA AAAATA AATATAA AATATTA TAATAATA
1 AATATA AATATA AATATA AATATA AATATA AATAT-A AATA-TA -AAT-ATA
8021766 AATA-A AATA-A AATATA
1 AATATA AATATA AATATA
8021782 TGATATTAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
3 1 0.02
4 2 0.04
5 11 0.22
6 19 0.39
7 9 0.18
8 6 0.12
9 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATA
Found at i:8021770 original size:52 final size:52
Alignment explanation
Indices: 8021704--8021804 Score: 132
Period size: 52 Copynumber: 1.9 Consensus size: 52
8021694 AATGATATTA
* *
8021704 TATAAAAATTAATAATATAAATATAAAT-ATATTAAAAATAAATATAAAATAT
1 TATAAAAATAAATAAAATAAA-ATAAATGATATTAAAAATAAATATAAAATAT
* * * *
8021756 TATAATAATAAATAAAATAAAATATATGATATTAAAAATATATTTAAAA
1 TATAAAAATAAATAAAATAAAATAAATGATATTAAAAATAAATATAAAA
8021805 AATGATATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 5 0.12
52 37 0.88
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (52 bp):
TATAAAAATAAATAAAATAAAATAAATGATATTAAAAATAAATATAAAATAT
Found at i:8021804 original size:32 final size:32
Alignment explanation
Indices: 8021728--8021804 Score: 79
Period size: 32 Copynumber: 2.4 Consensus size: 32
8021718 ATATAAATAT
*
8021728 AAATATATTAAAAATAAATATAAAATATTATA
1 AAATATATTTAAAATAAATATAAAATATTATA
* **
8021760 ATAATA-A-ATAAAATAAAATATATGATATTA-A
1 A-AATATATTTAAAAT-AAATATAAAATATTATA
8021791 AAATATATTTAAAA
1 AAATATATTTAAAA
8021805 AATGATATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
30 4 0.11
31 8 0.22
32 20 0.56
33 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (32 bp):
AAATATATTTAAAATAAATATAAAATATTATA
Found at i:8021810 original size:25 final size:24
Alignment explanation
Indices: 8021714--8021814 Score: 78
Period size: 25 Copynumber: 3.9 Consensus size: 24
8021704 TATAAAAATT
8021714 AATAATATAAATATAAAT-ATATTAAA
1 AATAATAT-AA-A-AAATGATATTAAA
* * *
8021740 AATAAATATAAAATATTATAATAATA
1 AAT-AATATAAAAAATGATATTAA-A
*
8021766 AATAAAATAAAATATATGATATTAAA
1 AATAATATAAAA-A-ATGATATTAAA
*
8021792 AATATATTTAAAAAATGATATTA
1 AATA-ATATAAAAAATGATATTA
8021815 TATAAAAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
24 3 0.05
25 24 0.39
26 15 0.25
27 19 0.31
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
AATAATATAAAAAATGATATTAAA
Found at i:8021821 original size:111 final size:113
Alignment explanation
Indices: 8021574--8021851 Score: 497
Period size: 111 Copynumber: 2.5 Consensus size: 113
8021564 TAAAAATATA
8021574 TTAAAAATATGATATTATATAAAAATTAATAATATAAATATAAATATATTAAAAATAAAATATAA
1 TTAAAAA-ATGATATTATATAAAAATTAATAATATAAATATAAATATATTAAAAATAAAATATAA
8021639 AATATTATAATAATAAATAAAAATAAAATATATGACATTAAAAATATAT
65 AATATTATAATAATAAATAAAAATAAAATATATGACATTAAAAATATAT
*
8021688 TTAAGAAATGATATTATATAAAAATTAATAATATAAATATAAATATATTAAAAAT-AAATATAAA
1 TTAAAAAATGATATTATATAAAAATTAATAATATAAATATAAATATATTAAAAATAAAATATAAA
*
8021752 ATATTATAATAATAAAT-AAAATAAAATATATGATATTAAAAATATAT
66 ATATTATAATAATAAATAAAAATAAAATATATGACATTAAAAATATAT
*
8021799 TTAAAAAATGATATTATATAAAAATTAATAATAAAAAATATAAATATATTAAA
1 TTAAAAAATGATATTATATAAAAATTAATAAT-ATAAATATAAATATATTAAA
8021852 CTTATATTTT
Statistics
Matches: 159, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
111 60 0.38
112 45 0.28
113 48 0.30
114 6 0.04
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (113 bp):
TTAAAAAATGATATTATATAAAAATTAATAATATAAATATAAATATATTAAAAATAAAATATAAA
ATATTATAATAATAAATAAAAATAAAATATATGACATTAAAAATATAT
Found at i:8022021 original size:15 final size:15
Alignment explanation
Indices: 8022001--8022041 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8021991 ATTTCCCTGT
8022001 AATCACATTGCTTGC
1 AATCACATTGCTTGC
*
8022016 AATCACATTACTTGC
1 AATCACATTGCTTGC
8022031 AATCACATTGC
1 AATCACATTGC
8022042 ATTGTAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (15 bp):
AATCACATTGCTTGC
Found at i:8027300 original size:13 final size:13
Alignment explanation
Indices: 8027269--8027293 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8027259 AATTAAATAT
8027269 TATTTAAAAATTA
1 TATTTAAAAATTA
8027282 TATTTAAAAATT
1 TATTTAAAAATT
8027294 TGATTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATTTAAAAATTA
Found at i:8028394 original size:16 final size:15
Alignment explanation
Indices: 8028376--8028426 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
8028366 TTTTATTATT
8028376 TATTTTAATATAATA
1 TATTTTAATATAATA
8028391 TTATTTT--TA-AATA
1 -TATTTTAATATAATA
*
8028404 TATTTTTAATATCATA
1 TA-TTTTAATATAATA
8028420 TATTTTA
1 TATTTTA
8028427 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
12 2 0.07
13 8 0.27
14 2 0.07
15 7 0.23
16 11 0.37
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTAATATAATA
Found at i:8028398 original size:29 final size:30
Alignment explanation
Indices: 8028365--8028450 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 30
8028355 ATATTTATGT
8028365 TTTTTATTATTTA-TTTTAATATAATATTA
1 TTTTTATTATTTATTTTTAATATAATATTA
* * *
8028394 TTTTTA-AATATATTTTTAATATCATA-TA
1 TTTTTATTATTTATTTTTAATATAATATTA
* *
8028422 -TTTTATT-TTTATTTTTATTATAATCTTA
1 TTTTTATTATTTATTTTTAATATAATATTA
8028450 T
1 T
8028451 AAATTTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
27 19 0.42
28 8 0.18
29 18 0.40
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTTTATTATTTATTTTTAATATAATATTA
Found at i:8029132 original size:28 final size:28
Alignment explanation
Indices: 8029101--8029156 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
8029091 ATAACATTGT
8029101 AAAATATTTTTAACAAAATTAAAAAATA
1 AAAATATTTTTAACAAAATTAAAAAATA
* * *
8029129 AAAATATTTTTAATAACATTACAAAATA
1 AAAATATTTTTAACAAAATTAAAAAATA
8029157 CAATACAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (28 bp):
AAAATATTTTTAACAAAATTAAAAAATA
Found at i:8034287 original size:17 final size:18
Alignment explanation
Indices: 8034267--8034300 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8034257 TTAAAACCTA
8034267 TCAAAAATATT-ATTTAG
1 TCAAAAATATTAATTTAG
*
8034284 TCAAAATTATTAATTTA
1 TCAAAAATATTAATTTA
8034301 TCGAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (18 bp):
TCAAAAATATTAATTTAG
Found at i:8055118 original size:22 final size:22
Alignment explanation
Indices: 8055093--8055155 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
8055083 GTACTTGTAC
**
8055093 TTTTTAATTTTATTTAATTTAA
1 TTTTTAATTTTAAATAATTTAA
*
8055115 TTTTT-ATATTAAAATAATTTAA
1 TTTTTAAT-TTTAAATAATTTAA
8055137 TTTATTAATTTTAAA-AATT
1 TTT-TTAATTTTAAATAATT
8055156 ATATCAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.06
22 23 0.68
23 7 0.21
24 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTAATTTTAAATAATTTAA
Found at i:8067047 original size:30 final size:29
Alignment explanation
Indices: 8067004--8067072 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 29
8066994 TATTTAATTA
8067004 AAATTTTATATTTTTATTTTAAATTAAAT
1 AAATTTTATATTTTTATTTTAAATTAAAT
8067033 AAATTTTGATATTTTTATTTTAAATTAAAT
1 AAATTTT-ATATTTTTATTTTAAATTAAAT
8067063 AAATTCTTAT
1 AAATT-TTAT
8067073 CATTAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
29 7 0.18
30 29 0.76
31 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (29 bp):
AAATTTTATATTTTTATTTTAAATTAAAT
Found at i:8067511 original size:20 final size:20
Alignment explanation
Indices: 8067486--8067538 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 20
8067476 CATGAAAAGT
8067486 TAATATATTATAATTAATAA
1 TAATATATTATAATTAATAA
8067506 TAATATA--A-AA-T-AT--
1 TAATATATTATAATTAATAA
8067519 TAATATATTATAATTAATAA
1 TAATATATTATAATTAATAA
8067539 AAACGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 14
0.65 0.00 0.35
Matches are distributed among these distances:
13 7 0.27
15 3 0.12
16 3 0.12
17 3 0.12
18 3 0.12
20 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAATATATTATAATTAATAA
Found at i:8067555 original size:33 final size:33
Alignment explanation
Indices: 8067475--8067555 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
8067465 GATGATAATG
*
8067475 ACATGAAAA-GTTAATATATTATAATTAATAATA
1 ACAT-AAAATGTTAATATATTATAATTAATAAAA
* *
8067508 ATATAAAATATTAATATATTATAATTAATAAAA
1 ACATAAAATGTTAATATATTATAATTAATAAAA
* *
8067541 ACGTAATATGTTAAT
1 ACATAAAATGTTAAT
8067556 TTGATATGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 4 0.10
33 36 0.90
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.38
Consensus pattern (33 bp):
ACATAAAATGTTAATATATTATAATTAATAAAA
Found at i:8068192 original size:15 final size:15
Alignment explanation
Indices: 8068159--8068213 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
8068149 ATTTTATAAT
* * *
8068159 GTAATATGATTATAG
1 GTAATATAATTGTAA
*
8068174 GTAATGTAATTGTAA
1 GTAATATAATTGTAA
*
8068189 GTAATATAATTGTAT
1 GTAATATAATTGTAA
*
8068204 GGAATATAAT
1 GTAATATAAT
8068214 ATTATAATGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (15 bp):
GTAATATAATTGTAA
Found at i:8068392 original size:16 final size:15
Alignment explanation
Indices: 8068358--8068424 Score: 52
Period size: 16 Copynumber: 4.5 Consensus size: 15
8068348 TTAATATATT
*
8068358 TATATTTATTAT-TAT
1 TATATTT-TTATATAA
8068373 TA-ATTTTTATATAA
1 TATATTTTTATATAA
*
8068387 TATAATATTT-TA-AA
1 TAT-ATTTTTATATAA
*
8068401 TATATTTTTAATATCA
1 TATATTTTT-ATATAA
8068417 TATATTTT
1 TATATTTT
8068425 ATTTTTTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 9 0.21
14 13 0.31
15 6 0.14
16 14 0.33
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATTTTTATATAA
Found at i:8068676 original size:15 final size:16
Alignment explanation
Indices: 8068648--8068698 Score: 67
Period size: 14 Copynumber: 3.5 Consensus size: 16
8068638 ATATCTATTA
8068648 ATTATAAT-AT-AATT
1 ATTATAATAATAAATT
8068662 A-TATAATAATAAATT
1 ATTATAATAATAAATT
8068677 ATTATAA-AATAAA-T
1 ATTATAATAATAAATT
8068691 ATTATAAT
1 ATTATAAT
8068699 TTAATTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
13 6 0.18
14 11 0.33
15 11 0.33
16 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTATAATAATAAATT
Found at i:8089820 original size:45 final size:45
Alignment explanation
Indices: 8089751--8089889 Score: 215
Period size: 46 Copynumber: 3.0 Consensus size: 45
8089741 TCCAAATAGC
*
8089751 TGGCCAGAAAATTTCAAGCCACGCGGAGAGAGACACAAACAGAGTG
1 TGGCCAGAAAA-TTCAAGCCACGCGTAGAGAGACACAAACAGAGTG
*
8089797 TGGCCAGAAAATTCAAGCCACGCGTAGAGAGACCCAAACAGAGTG
1 TGGCCAGAAAATTCAAGCCACGCGTAGAGAGACACAAACAGAGTG
* * *
8089842 TGACCAGAAAAATTCAAGCAACGCGTAGAGAGACACAATCAGAGTG
1 TGGCCAG-AAAATTCAAGCCACGCGTAGAGAGACACAAACAGAGTG
8089888 TG
1 TG
8089890 AACGCTGGAT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
45 38 0.44
46 48 0.56
ACGTcount: A:0.40, C:0.22, G:0.27, T:0.12
Consensus pattern (45 bp):
TGGCCAGAAAATTCAAGCCACGCGTAGAGAGACACAAACAGAGTG
Found at i:8109075 original size:25 final size:25
Alignment explanation
Indices: 8109041--8109088 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
8109031 ATCAAACAAG
8109041 GCTTTCTAAAATTCGTTGACCCAAA
1 GCTTTCTAAAATTCGTTGACCCAAA
*
8109066 GCTTTCTAAAATTCGTTGTCCCA
1 GCTTTCTAAAATTCGTTGACCCA
8109089 TTACCCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.35
Consensus pattern (25 bp):
GCTTTCTAAAATTCGTTGACCCAAA
Found at i:8111843 original size:4 final size:4
Alignment explanation
Indices: 8111834--8111868 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
8111824 ATAGAATGCA
8111834 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
8111869 AGTTAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8112424 original size:73 final size:73
Alignment explanation
Indices: 8112337--8112479 Score: 261
Period size: 73 Copynumber: 2.0 Consensus size: 73
8112327 AAAAATGATT
8112337 TTCGCTCACCATATATAAGTCCAACAGAACAGTCAATAT-AAGCTTATTAAAACAGAATGTGAGC
1 TTCGCTCACCATATATAAGTCCAACAGAACAGTCAATATGAA-CTTATTAAAACAGAATGTGAGC
8112401 TTACAGTGA
65 TTACAGTGA
*
8112410 TTCGCTCACCATATATCAGTCCAACAGAACAGTCAATATGAACTTATTAAAACAGAATGTGAGCT
1 TTCGCTCACCATATATAAGTCCAACAGAACAGTCAATATGAACTTATTAAAACAGAATGTGAGCT
8112475 TACAG
66 TACAG
8112480 GGTGCCGAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
73 66 0.97
74 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (73 bp):
TTCGCTCACCATATATAAGTCCAACAGAACAGTCAATATGAACTTATTAAAACAGAATGTGAGCT
TACAGTGA
Found at i:8112838 original size:11 final size:11
Alignment explanation
Indices: 8112822--8112847 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8112812 ATTTTAAAAA
8112822 TAATTAAAACT
1 TAATTAAAACT
8112833 TAATTAAAACT
1 TAATTAAAACT
8112844 TAAT
1 TAAT
8112848 ATTATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATTAAAACT
Found at i:8114299 original size:15 final size:17
Alignment explanation
Indices: 8114279--8114319 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
8114269 AAGTTAAATT
8114279 TTATATAATTTT-TAA-
1 TTATATAATTTTCTAAG
8114294 TTATAT-ATTTTCTAAG
1 TTATATAATTTTCTAAG
8114310 TTATA-AATTT
1 TTATATAATTT
8114320 AGACTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 9 0.39
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
TTATATAATTTTCTAAG
Found at i:8117989 original size:41 final size:41
Alignment explanation
Indices: 8117932--8118014 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
8117922 ATGGAATCTC
*
8117932 TTCTTCAGTTATTCTTTATGCAATCAAGATTGTTAAGGGTA
1 TTCTTCAGTTATTCTTTATGCAATCAAGATTGTTAAAGGTA
8117973 TTCTTCAGTTATTCTTTATGCAATCAAGATTGTTAAAGGTA
1 TTCTTCAGTTATTCTTTATGCAATCAAGATTGTTAAAGGTA
8118014 T
1 T
8118015 GAGCTTTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.45
Consensus pattern (41 bp):
TTCTTCAGTTATTCTTTATGCAATCAAGATTGTTAAAGGTA
Found at i:8124139 original size:105 final size:104
Alignment explanation
Indices: 8123958--8124156 Score: 346
Period size: 105 Copynumber: 1.9 Consensus size: 104
8123948 TCTAAGACAC
* *
8123958 CTTGAGGAGGAATTAACAGTGCAAAACTTTGGTTGAGATGTTGAATTTAAAATTTGGATGAACAA
1 CTTGAGGAGGAATTAACAGTGCAAAACTTTGGTTAAGACGTTGAATTTAAAATTTGGATGAACAA
*
8124023 GTTATGTCCTTGTTTTGGAGTTAGTTGTGGCAACAACTT
66 GTTATGTCCTTGTTTTGAAGTTAGTTGTGGCAACAACTT
8124062 CTTGAGGAGG-ATTAACAGTGCAAAAACCTTTGGTTAAGACGTTGAATTTAAAATTTGGATGAAC
1 CTTGAGGAGGAATTAACAGTGC-AAAA-CTTTGGTTAAGACGTTGAATTTAAAATTTGGATGAAC
8124126 AAGTTATGTCCTTGTTTTGAAGTTAGTTGTG
64 AAGTTATGTCCTTGTTTTGAAGTTAGTTGTG
8124157 ACTACTTTTT
Statistics
Matches: 90, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
103 11 0.12
104 14 0.16
105 65 0.72
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.36
Consensus pattern (104 bp):
CTTGAGGAGGAATTAACAGTGCAAAACTTTGGTTAAGACGTTGAATTTAAAATTTGGATGAACAA
GTTATGTCCTTGTTTTGAAGTTAGTTGTGGCAACAACTT
Found at i:8139311 original size:16 final size:15
Alignment explanation
Indices: 8139285--8139315 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
8139275 TTAATTTTTC
8139285 AATTAAAAAAATTAT
1 AATTAAAAAAATTAT
8139300 AATTATAAAAAATTAT
1 AATTA-AAAAAATTAT
8139316 TTTCAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTAAAAAAATTAT
Found at i:8147831 original size:2 final size:2
Alignment explanation
Indices: 8147824--8147848 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8147814 CTTGATACTT
8147824 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
8147849 GGGCAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8153501 original size:23 final size:24
Alignment explanation
Indices: 8153469--8153513 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
8153459 AATAATTATT
*
8153469 TTATTAAAATATAATTTTTAAAAG
1 TTATTAAAATATAATATTTAAAAG
8153493 TTATT-AAATATAATATTTAAA
1 TTATTAAAATATAATATTTAAA
8153514 TAATTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
TTATTAAAATATAATATTTAAAAG
Done.