Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397256.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_56.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13963513
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 99179 characters in sequence are not A, C, G, or T
File 22 of 29
Found at i:8758423 original size:17 final size:17
Alignment explanation
Indices: 8758383--8758433 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
8758373 ATTATATTAT
*
8758383 ATATATACTAATACTTTTA
1 ATATATA-T-ATACTTTAA
*
8758402 GTATATATATACTTTAA
1 ATATATATATACTTTAA
*
8758419 ATATAAATATA-TTTA
1 ATATATATATACTTTA
8758434 TTTTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 4 0.14
17 17 0.61
18 1 0.04
19 6 0.21
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (17 bp):
ATATATATATACTTTAA
Found at i:8758553 original size:301 final size:296
Alignment explanation
Indices: 8758109--8758785 Score: 753
Period size: 301 Copynumber: 2.2 Consensus size: 296
8758099 TAATTACTAT
*
8758109 TATATATACTTTAAATATAAATATATTTATTTTTTATTTTGTGTTAACATTATAAAAATTATAAC
1 TATATATACTTTAAATATAAATATATTTATTTTTTATTTTATGTTAACATTATAAAAATTATAAC
* * * * *
8758174 TTATAATATATATACTTAAAAGAGAGTATTTGAGATTAAAATAGTTTGGAATCTAACTATTTTTG
66 TTATAATATACAAACTTAAAAGAGAGTATATGAGAATAAAATAGTTTGGAACCTAACTATTTTTG
* * *
8758239 TTAATTTCATGTAATTAAAGATAAACCCATATAGTTAGTTAAATTAATTCATTAAATTATGATTA
131 TTAATTTCATGTAATTAAAGACAAACCCATATAGTTAATTAAATTAATTCATAAAATTATGATTA
*
8758304 TTAATTAAC-TTGAAATGTT-TTTTAATATA-TACATTATATATATTTG-GTTCATTTAT-AAGA
196 TTAATT-ACTTTGAAAT-TTCTTTTAATATATTACATTATACATA-TTGAGTTCATTTATAAAG-
*
8758364 AATATAATTATTATATTATATATA-TACTAATACTTTTAGTA
257 AATATAATTATTAT-TTATATATAGTAAT-ATACTTTTAGTA
* * ****
8758405 TATATATACTTTAAATATAAATATATTTATTTTTTATTTTATATTAATATACACTTTTGTTTA-T
1 TATATATACTTTAAATATAAATATATTTATTTTTTATTTTAT-GT--TA-ACA-TTATAAAAATT
* * * * *
8758469 ATAAATTTATAATATACAAACTT-TAAGAGAAGT-TATGAGAATAGAATAGTTTTGAGACCTAAT
61 AT-AACTTATAATATACAAACTTAAAAGAG-AGTATATGAGAATAAAATAGTTTGGA-ACCTAAC
* * * *
8758532 TATTTTTTTTAATTTCATGTAATTAAGGACAAACTCATATATTTAATTAAATTAATTCATAAAAT
123 TATTTTTGTTAATTTCATGTAATTAAAGACAAACCCATATAGTTAATTAAATTAATTCATAAAAT
* *
8758597 TATGATTATTAATTACTTTGTAATTTCTTTTAATATATTTACTTTATACATATTGAGTTCATTTA
188 TATGATTATTAATTACTTTGAAATTTCTTTTAATATA-TTACATTATACATATTGAGTTCATTTA
* *
8758662 TAAAGAATATAATTTTTATTTATATATAGTAATATACTTTTAGTGTGTG
252 TAAAGAATATAATTATTATTTATATATAGTAATATACTTTTA----GTA
* * * * *
8758711 TGTAATATTACAATTTAAATATAAACATATTTACTTTCTTA-TTTGTGTTAACATTACAAAAATT
1 TAT-ATA-TAC--TTTAAATATAAATATATTTA-TTTTTTATTTTATGTTAACATTATAAAAATT
8758775 ATAACTTATAA
61 ATAACTTATAA
8758786 AATTATAATT
Statistics
Matches: 314, Mismatches: 42, Indels: 41
0.79 0.11 0.10
Matches are distributed among these distances:
296 41 0.13
297 1 0.00
299 2 0.01
300 33 0.11
301 117 0.37
302 21 0.07
303 37 0.12
304 3 0.01
305 11 0.04
306 10 0.03
307 5 0.02
308 3 0.01
309 1 0.00
310 23 0.07
311 6 0.02
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.47
Consensus pattern (296 bp):
TATATATACTTTAAATATAAATATATTTATTTTTTATTTTATGTTAACATTATAAAAATTATAAC
TTATAATATACAAACTTAAAAGAGAGTATATGAGAATAAAATAGTTTGGAACCTAACTATTTTTG
TTAATTTCATGTAATTAAAGACAAACCCATATAGTTAATTAAATTAATTCATAAAATTATGATTA
TTAATTACTTTGAAATTTCTTTTAATATATTACATTATACATATTGAGTTCATTTATAAAGAATA
TAATTATTATTTATATATAGTAATATACTTTTAGTA
Found at i:8759079 original size:19 final size:19
Alignment explanation
Indices: 8759042--8759081 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8759032 TAACACTAAA
* **
8759042 ATACTTTTAATATGCATAT
1 ATACTTTAAATATAAATAT
8759061 ATACTTTAAATATAAATAT
1 ATACTTTAAATATAAATAT
8759080 AT
1 AT
8759082 TTACTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (19 bp):
ATACTTTAAATATAAATAT
Found at i:8759124 original size:16 final size:16
Alignment explanation
Indices: 8759104--8759141 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
8759094 TTATGTTGAC
8759104 ATTATAAAAATTA-TA
1 ATTATAAAAATTATTA
8759119 ACTTAT-AAAATTATTA
1 A-TTATAAAAATTATTA
8759135 ATTATAA
1 ATTATAA
8759142 TATATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTATAAAAATTATTA
Found at i:8759354 original size:28 final size:29
Alignment explanation
Indices: 8759304--8759363 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
8759294 TTCATTTATA
8759304 AATACTTATAGTTTGAGTATTTA-AAATT
1 AATACTTATAGTTTGAGTATTTATAAATT
* * * * *
8759332 AATATTTATTGTTTGTGTTTTTATTAATT
1 AATACTTATAGTTTGAGTATTTATAAATT
8759361 AAT
1 AAT
8759364 TAGTAATTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (29 bp):
AATACTTATAGTTTGAGTATTTATAAATT
Found at i:8767398 original size:21 final size:22
Alignment explanation
Indices: 8767364--8767407 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8767354 ATATTGTTTA
8767364 TATAAATATAATAA-AAAAATT
1 TATAAATATAATAATAAAAATT
* * *
8767385 TATAATTATTATAATTAAAATT
1 TATAAATATAATAATAAAAATT
8767407 T
1 T
8767408 TTATTATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAATATAATAATAAAAATT
Found at i:8767413 original size:18 final size:18
Alignment explanation
Indices: 8767390--8767425 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8767380 AAATTTATAA
8767390 TTATTATAATTAAAATTT
1 TTATTATAATTAAAATTT
* *
8767408 TTATTATATTTGAAATTT
1 TTATTATAATTAAAATTT
8767426 ATCTAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TTATTATAATTAAAATTT
Found at i:8768799 original size:13 final size:13
Alignment explanation
Indices: 8768781--8768819 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8768771 TTTTATGTAT
8768781 ATTATAATTATAG
1 ATTATAATTATAG
*
8768794 ATTATAAATATAG
1 ATTATAATTATAG
8768807 A-TA-AATTATAG
1 ATTATAATTATAG
8768818 AT
1 AT
8768820 AAATAGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 8 0.35
12 2 0.09
13 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (13 bp):
ATTATAATTATAG
Found at i:8770131 original size:2 final size:2
Alignment explanation
Indices: 8770124--8770161 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8770114 TTAGAAGACC
8770124 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8770162 TCATTAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8796254 original size:2 final size:2
Alignment explanation
Indices: 8796247--8796277 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8796237 TGGTTTGGTT
8796247 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8796278 CTGGTCTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8801746 original size:27 final size:27
Alignment explanation
Indices: 8801653--8801776 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
8801643 TCATGGTTAA
* *
8801653 TTTACCCATTAGAAATGGATGGATAAT
1 TTTACCCATTAGAAATAGATAGATAAT
** * * *
8801680 TTTATTCATTAAAAATAGACAGATATT
1 TTTACCCATTAGAAATAGATAGATAAT
* * *
8801707 TTTAACCACTAGAAGTAGATAGATAAT
1 TTTACCCATTAGAAATAGATAGATAAT
* *
8801734 TTTACCCATTAGAAGTAGAT-GAATATT
1 TTTACCCATTAGAAATAGATAG-ATAAT
*
8801761 TTTACTCATTAGAAAT
1 TTTACCCATTAGAAAT
8801777 TGATGTATAG
Statistics
Matches: 77, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
26 1 0.01
27 76 0.99
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (27 bp):
TTTACCCATTAGAAATAGATAGATAAT
Found at i:8801791 original size:27 final size:26
Alignment explanation
Indices: 8801734--8801801 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
8801724 GATAGATAAT
* **
8801734 TTTACCCATTAGAAGTAGATGAATATT
1 TTTA-CCATTAGAAATAGATGAATAGC
* *
8801761 TTTACTCATTAGAAATTGATGTATAGC
1 TTTAC-CATTAGAAATAGATGAATAGC
8801788 TTTACCTATTAGAA
1 TTTACC-ATTAGAA
8801802 GTGGTTTATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (26 bp):
TTTACCATTAGAAATAGATGAATAGC
Found at i:8807677 original size:2 final size:2
Alignment explanation
Indices: 8807670--8807701 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8807660 ACCTGGCACA
8807670 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8807702 CTTGGTAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8825993 original size:9 final size:9
Alignment explanation
Indices: 8825979--8826003 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8825969 TTTTGTTATG
8825979 GACTCGTCT
1 GACTCGTCT
8825988 GACTCGTCT
1 GACTCGTCT
8825997 GACTCGT
1 GACTCGT
8826004 TGCCCATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.32, G:0.24, T:0.32
Consensus pattern (9 bp):
GACTCGTCT
Found at i:8848085 original size:18 final size:18
Alignment explanation
Indices: 8848062--8848099 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8848052 GAGGATGTGG
8848062 TGGGGTGTAATCATCGAA
1 TGGGGTGTAATCATCGAA
8848080 TGGGGTGTAATCATCGAA
1 TGGGGTGTAATCATCGAA
8848098 TG
1 TG
8848100 CTAGCCAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.34, T:0.29
Consensus pattern (18 bp):
TGGGGTGTAATCATCGAA
Found at i:8854545 original size:2 final size:2
Alignment explanation
Indices: 8854538--8854562 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8854528 AATAGTATTC
8854538 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8854563 TCAATTCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8860584 original size:23 final size:25
Alignment explanation
Indices: 8860536--8860589 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
8860526 AAAAATATTA
8860536 AATAATCAATATTATCATATCAAATT
1 AATAATCAATATTATCA-ATCAAATT
8860562 AATATATC-ATATTATC-ATC-AATT
1 AATA-ATCAATATTATCAATCAAATT
8860585 -ATAAT
1 AATAAT
8860590 ATATTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
21 2 0.07
22 3 0.11
23 4 0.15
24 3 0.11
26 12 0.44
27 3 0.11
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (25 bp):
AATAATCAATATTATCAATCAAATT
Found at i:8860739 original size:30 final size:29
Alignment explanation
Indices: 8860704--8860797 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 29
8860694 TTATAAAAAC
8860704 TTATTTAATTCAAAATAAAAATAAAATAAT
1 TTATTTAATT-AAAATAAAAATAAAATAAT
8860734 TTATTTAACTTAAAATAAAAATATAAA-AAT
1 TTATTTAA-TTAAAATAAAAATA-AAATAAT
* * * *
8860764 TTAATTAAATATAATAAAATATAAATTAAT
1 TTATTTAATTAAAATAAAA-ATAAAATAAT
8860794 TTAT
1 TTAT
8860798 ATTTTCTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
29 11 0.20
30 39 0.71
31 5 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
TTATTTAATTAAAATAAAAATAAAATAAT
Found at i:8860777 original size:26 final size:28
Alignment explanation
Indices: 8860736--8860788 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
8860726 AAAATAATTT
8860736 ATTTAACTTAAAAT-A-AAAATATAAAA
1 ATTTAACTTAAAATAATAAAATATAAAA
8860762 ATTTAA-TTAAATATAATAAAATATAAA
1 ATTTAACTTAAA-ATAATAAAATATAAA
8860789 TTAATTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 5 0.21
26 8 0.33
27 1 0.04
28 10 0.42
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (28 bp):
ATTTAACTTAAAATAATAAAATATAAAA
Found at i:8881471 original size:47 final size:45
Alignment explanation
Indices: 8881339--8881498 Score: 150
Period size: 45 Copynumber: 3.5 Consensus size: 45
8881329 CTTTTTCACA
* * *
8881339 AATATTATCAAAATTATAATGAAGGTTATTTTTGTATTTTG-TTAAT
1 AATATTAT-TAAATTATAATAAAGG-TATTTTGGTATTTTGATTAAT
*
8881385 AATATTATTAAAGGTTA-AATAAAGGTATTTTCGG-CTTTTGACCTTAA-
1 AATATTATTAAA--TTATAATAAAGGTATTTT-GGTATTTTGA--TTAAT
*
8881432 AATGTTATTAAATTATAATAAAGAGTATTTTGGTATTTTGA-TAAT
1 AATATTATTAAATTATAATAAAG-GTATTTTGGTATTTTGATTAAT
* *
8881477 AATATTATTGAATTATAGTAAA
1 AATATTATTAAATTATAATAAA
8881499 AGATAATTTA
Statistics
Matches: 95, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
44 3 0.03
45 36 0.38
46 25 0.26
47 27 0.28
48 4 0.04
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.45
Consensus pattern (45 bp):
AATATTATTAAATTATAATAAAGGTATTTTGGTATTTTGATTAAT
Found at i:8904934 original size:42 final size:42
Alignment explanation
Indices: 8904888--8904968 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
8904878 TCTAGTTGAT
* *
8904888 TCTATATC-CCCACATACTGGTTTGCACACATTTATATGGCAG
1 TCTATA-CACCCAAATACTGGTTTGCACACAATTATATGGCAG
*
8904930 TCTATACACCCAAATATTGGTTTGCACACAATTATATGG
1 TCTATACACCCAAATACTGGTTTGCACACAATTATATGG
8904969 AAAACACTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (42 bp):
TCTATACACCCAAATACTGGTTTGCACACAATTATATGGCAG
Found at i:8906545 original size:25 final size:24
Alignment explanation
Indices: 8906496--8906545 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
8906486 GGCTTAAAAA
* *
8906496 GTGGGATTGGGATTTTGAAGTTTG
1 GTGGGATTGGGATTGTGAAGATTG
8906520 GTGGAGATTGAGGATTGTG-AGATTG
1 GTGG-GATTG-GGATTGTGAAGATTG
8906545 G
1 G
8906546 GAGTTCTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 4 0.18
25 11 0.50
26 7 0.32
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (24 bp):
GTGGGATTGGGATTGTGAAGATTG
Found at i:8908553 original size:21 final size:20
Alignment explanation
Indices: 8908529--8908594 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 20
8908519 GTCGCGTCAT
8908529 ACTTTCTTTGTAGCTTGCATC
1 ACTTTCTTTGTA-CTTGCATC
* * *
8908550 ACTTTGTGT-TACGTGC-T-
1 ACTTTCTTTGTACTTGCATC
*
8908567 ACTTTCTTTGTTCCTTGCATC
1 ACTTTCTTTG-TACTTGCATC
8908588 ACTTTCT
1 ACTTTCT
8908595 ACCATGTGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
17 7 0.21
18 1 0.03
19 9 0.26
20 3 0.09
21 14 0.41
ACGTcount: A:0.12, C:0.24, G:0.14, T:0.50
Consensus pattern (20 bp):
ACTTTCTTTGTACTTGCATC
Found at i:8908584 original size:38 final size:38
Alignment explanation
Indices: 8908456--8908806 Score: 182
Period size: 38 Copynumber: 9.2 Consensus size: 38
8908446 GTGTGCCACC
* * *
8908456 TTCTTTGTAGCTTACATCTCTTTGTGTTACATGTTACT
1 TTCTTTGTAGCTTACATCACTTTGTGTTACGTGCTACT
* **
8908494 TTCTTTGTAG-TTCACATCATTTTGTGTCGCGT-CATACT
1 TTCTTTGTAGCTT-ACATCACTTTGTGTTACGTGC-TACT
*
8908532 TTCTTTGTAGCTTGCATCACTTTGTGTTACGTGCTACT
1 TTCTTTGTAGCTTACATCACTTTGTGTTACGTGCTACT
** * * *** * *
8908570 TTCTTTGTTCCTTGCATCACTTTCTACCATGTGCTACC
1 TTCTTTGTAGCTTACATCACTTTGTGTTACGTGCTACT
* * **
8908608 TTCTTTGTAACGCGT--ATCACTTTGTGTCATATGCTACT
1 TTCTTTGT-A-GCTTACATCACTTTGTGTTACGTGCTACT
* * * * *
8908646 TTCTTTATAAC-T-CATTGCAATTTGTGTTGCGTGCTACC
1 TTCTTTGTAGCTTACA-T-CACTTTGTGTTACGTGCTACT
* * ** * * *
8908684 TTCTTTGTAG-TTCGCATCACTTTATGCGACATGTTACC
1 TTCTTTGTAGCTT-ACATCACTTTGTGTTACGTGCTACT
* ***
8908722 TTCTTTATAGC-T-CATTGCACTTTGTGTCGTGTGCTACCT
1 TTCTTTGTAGCTTACA-T-CACTTTGTGTTACGTGCTA-CT
* * * *
8908761 TT-TTTGTAGCTTTCATCACTTTGTGCTGCCTGCTACT
1 TTCTTTGTAGCTTACATCACTTTGTGTTACGTGCTACT
8908798 TTCTTTGTA
1 TTCTTTGTA
8908807 ACTCGTCATA
Statistics
Matches: 237, Mismatches: 57, Indels: 38
0.71 0.17 0.11
Matches are distributed among these distances:
35 1 0.00
36 4 0.02
37 9 0.04
38 208 0.88
39 9 0.04
40 6 0.03
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (38 bp):
TTCTTTGTAGCTTACATCACTTTGTGTTACGTGCTACT
Found at i:8908646 original size:114 final size:113
Alignment explanation
Indices: 8908528--8908805 Score: 280
Period size: 114 Copynumber: 2.4 Consensus size: 113
8908518 TGTCGCGTCA
* *
8908528 TACTTTCTTTGTAGCTTGCATCACTTTGTGTTACGTGCTACTTTCTTTGTTCCTT-GCATCACTT
1 TACTTTCTTTGTAGCTT-CATCACTTTGTGTTGCGTGCTACTTTCTTTGTTACTTCGCATCACTT
* * *
8908592 TCTAC-CATGTGCTACCTTCTTTGTAACGCGTAT-CACTTTGTGTCATATGC
65 TATACACATGT--TACCTTCTTTATAACGCAT-TGCACTTTGTGTCATATGC
* * * * *
8908642 TACTTTCTTTATAAC-TCATTGCAATTTGTGTTGCGTGCTACCTTCTTTG-TAGTTCGCATCACT
1 TACTTTCTTTGTAGCTTCA-T-CACTTTGTGTTGCGTGCTACTTTCTTTGTTACTTCGCATCACT
* * * * *
8908705 TTATGCGACATGTTACCTTCTTTATAGCTCATTGCACTTTGTGTCGTGTGC
64 TTATAC-ACATGTTACCTTCTTTATAACGCATTGCACTTTGTGTCATATGC
* *
8908756 TACCTTT-TTTGTAGCTTTCATCACTTTGTGCTGCCTGCTACTTTCTTTGT
1 TA-CTTTCTTTGTAGC-TTCATCACTTTGTGTTGCGTGCTACTTTCTTTGT
8908806 AACTCGTCAT
Statistics
Matches: 133, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
112 2 0.02
113 6 0.05
114 112 0.84
115 5 0.04
116 8 0.06
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (113 bp):
TACTTTCTTTGTAGCTTCATCACTTTGTGTTGCGTGCTACTTTCTTTGTTACTTCGCATCACTTT
ATACACATGTTACCTTCTTTATAACGCATTGCACTTTGTGTCATATGC
Found at i:8908820 original size:38 final size:39
Alignment explanation
Indices: 8908601--8908858 Score: 125
Period size: 38 Copynumber: 6.8 Consensus size: 39
8908591 TTCTACCATG
* * *
8908601 TGCTACCTTCTTTGTAACGCGT-ATCACTTTGTG-T-CATA
1 TGCTACCTTTTTTATAACTCGTCATCACTTTGTGCTGC--A
* * * *
8908639 TGCTA-CTTTCTTTATAACTCAT--TGCAATTTGTGTTGCG
1 TGCTACCTTT-TTTATAACTCGTCAT-CACTTTGTGCTGCA
* * ** *
8908677 TGCTACCTTCTTTGTAGTTCG-CATCACTTTATGC-GACA
1 TGCTACCTTTTTTATAACTCGTCATCACTTTGTGCTG-CA
* * * *
8908715 TGTTACCTTCTTTATAGCTCAT--TGCACTTTGTGTCGTG--
1 TGCTACCTTTTTTATAACTCGTCAT-CACTTTGTG-C-TGCA
* * * *
8908753 TGCTACCTTTTTTGTAGCT-TTCATCACTTTGTGCTGCC
1 TGCTACCTTTTTTATAACTCGTCATCACTTTGTGCTGCA
*
8908791 TGCTA-CTTTCTTTGTAACTCGTCAT-ACTTTGTGCTGCA
1 TGCTACCTTT-TTTATAACTCGTCATCACTTTGTGCTGCA
*
8908829 TGCTACCTTTTTTATAACTCG-CAACACTTT
1 TGCTACCTTTTTTATAACTCGTCATCACTTT
8908859 ATATCACGTG
Statistics
Matches: 170, Mismatches: 29, Indels: 42
0.71 0.12 0.17
Matches are distributed among these distances:
36 2 0.01
37 14 0.08
38 137 0.81
39 15 0.09
40 1 0.01
41 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.45
Consensus pattern (39 bp):
TGCTACCTTTTTTATAACTCGTCATCACTTTGTGCTGCA
Found at i:8908820 original size:76 final size:76
Alignment explanation
Indices: 8908443--8908823 Score: 263
Period size: 76 Copynumber: 5.0 Consensus size: 76
8908433 TTCACTTTAG
* * * * * **
8908443 GTCGTGTGCCACCTTCTTTGTAGCTTACATCTCTTTGTGTTACATGTTACTTTCTTTGTAGTTC-
1 GTCGTGTGCTACCTTCTTTGTAGCTTGCATCACTTTGTGCTACATGCTACTTTCTTTGTAACTCG
* *
8908507 ACATCATTTTGT
66 TCAT-ACTTTGT
* * * * ** *
8908519 GTCGCGT-CATACTTTCTTTGTAGCTTGCATCACTTTGTGTTACGTGCTACTTTCTTTGTTCCTT
1 GTCGTGTGC-TACCTTCTTTGTAGCTTGCATCACTTTGTGCTACATGCTACTTTCTTTGTAACTC
*
8908583 G-CATCACTTTCT
65 GTCAT-ACTTTGT
** * * ** * * *
8908595 ACCATGTGCTACCTTCTTTGTAACGCGTATCACTTTGTG-TCATATGCTACTTTCTTTATAACTC
1 GTCGTGTGCTACCTTCTTTGTAGCTTGCATCACTTTGTGCT-ACATGCTACTTTCTTTGTAACTC
*
8908659 ATTGCA-A-TTTGT
65 -GT-CATACTTTGT
* * * * * * * *
8908671 GTTGCGTGCTACCTTCTTTGTAG-TTCGCATCACTTTATGCGACATGTTACCTTCTTTATAGCTC
1 GTCGTGTGCTACCTTCTTTGTAGCTT-GCATCACTTTGTGCTACATGCTACTTTCTTTGTAACTC
* ***
8908735 ATTGCACTTTGT
65 GTCATACTTTGT
* * * *
8908747 GTCGTGTGCTACCTTTTTTGTAGCTTTCATCACTTTGTGCTGCCTGCTACTTTCTTTGTAACTCG
1 GTCGTGTGCTACCTTCTTTGTAGCTTGCATCACTTTGTGCTACATGCTACTTTCTTTGTAACTCG
8908812 TCATACTTTGT
66 TCATACTTTGT
8908823 G
1 G
8908824 CTGCATGCTA
Statistics
Matches: 229, Mismatches: 64, Indels: 24
0.72 0.20 0.08
Matches are distributed among these distances:
75 4 0.02
76 219 0.96
77 4 0.02
79 2 0.01
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (76 bp):
GTCGTGTGCTACCTTCTTTGTAGCTTGCATCACTTTGTGCTACATGCTACTTTCTTTGTAACTCG
TCATACTTTGT
Found at i:8922060 original size:2 final size:2
Alignment explanation
Indices: 8922053--8922095 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8922043 ACCTCCCAAA
8922053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8922095 A
1 A
8922096 AAAGGGAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8927860 original size:32 final size:33
Alignment explanation
Indices: 8927814--8927876 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
8927804 TGCATGAGTC
*
8927814 TGAATCATTACAATTAGTATCAAAATATGTGAA
1 TGAATCATAACAATTAGTATCAAAATATGTGAA
*
8927847 TGAATC-TAACAATTGGTATCAAAATATGTG
1 TGAATCATAACAATTAGTATCAAAATATGTG
8927877 CTAACCCGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 22 0.79
33 6 0.21
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (33 bp):
TGAATCATAACAATTAGTATCAAAATATGTGAA
Found at i:8935005 original size:19 final size:19
Alignment explanation
Indices: 8934983--8935020 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8934973 AAAAATATAA
* *
8934983 AAATTATTTAAATATTTTT
1 AAATAATTTAAAAATTTTT
8935002 AAATAATTTAAAAATTTTT
1 AAATAATTTAAAAATTTTT
8935021 TTAACTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AAATAATTTAAAAATTTTT
Found at i:8960750 original size:15 final size:16
Alignment explanation
Indices: 8960730--8960764 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
8960720 TTTAAGTTAT
8960730 ATTTTTTAAATTAAA-
1 ATTTTTTAAATTAAAG
8960745 ATTTTTTAAATTAAAG
1 ATTTTTTAAATTAAAG
8960761 ATTT
1 ATTT
8960765 CATTTATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
ATTTTTTAAATTAAAG
Found at i:8961062 original size:21 final size:21
Alignment explanation
Indices: 8961029--8961068 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8961019 TTCTGCTAAT
*
8961029 TTGAGTAAATTTAAATAAAAG
1 TTGAATAAATTTAAATAAAAG
*
8961050 TTGAATAATTTTAAATAAA
1 TTGAATAAATTTAAATAAA
8961069 TGTACATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (21 bp):
TTGAATAAATTTAAATAAAAG
Found at i:8961256 original size:29 final size:29
Alignment explanation
Indices: 8961201--8961257 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
8961191 TTTTTTTTAT
*
8961201 AAAAGAAAAATTCAAATTTAATTTTTTAAA
1 AAAAGAAAAATT-AAATTTAATATTTTAAA
*
8961231 AAAAGATAAATT-AATTTACATATTTTA
1 AAAAGAAAAATTAAATTTA-ATATTTTA
8961258 GATCAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 7 0.29
30 11 0.46
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (29 bp):
AAAAGAAAAATTAAATTTAATATTTTAAA
Found at i:8961735 original size:30 final size:30
Alignment explanation
Indices: 8961701--8961767 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
8961691 AAAGAAAGAT
8961701 TAAATTGA-TATAATTTTTAAAAT-TAAAAAC
1 TAAATTGATTATAA-TTTT-AAATCTAAAAAC
* *
8961731 TAAATT-ATTTTAATTTTGAATCTAAAAAC
1 TAAATTGATTATAATTTTAAATCTAAAAAC
8961760 TAAATTGA
1 TAAATTGA
8961768 ACAAAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.09
29 18 0.56
30 11 0.34
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (30 bp):
TAAATTGATTATAATTTTAAATCTAAAAAC
Found at i:8969784 original size:13 final size:14
Alignment explanation
Indices: 8969757--8969789 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8969747 CTTTTGACGT
*
8969757 TTGGCGTGATTGGA
1 TTGGCGTGATAGGA
8969771 TTGG-GTGATAGGA
1 TTGGCGTGATAGGA
8969784 TTGGCG
1 TTGGCG
8969790 GAAGTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.15, C:0.06, G:0.45, T:0.33
Consensus pattern (14 bp):
TTGGCGTGATAGGA
Found at i:8971563 original size:30 final size:30
Alignment explanation
Indices: 8971529--8971585 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
8971519 AGGTGCGTAT
8971529 GGCATCACAGGACAGTGTGGTGGGGAGAAG
1 GGCATCACAGGACAGTGTGGTGGGGAGAAG
8971559 GGCATCACAGGACAGTGTGGTGGGGAG
1 GGCATCACAGGACAGTGTGGTGGGGAG
8971586 CCCCTTCCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.14, G:0.47, T:0.14
Consensus pattern (30 bp):
GGCATCACAGGACAGTGTGGTGGGGAGAAG
Found at i:8977324 original size:20 final size:20
Alignment explanation
Indices: 8977288--8977325 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8977278 AAAAACAAAA
*
8977288 AAATAATAAAATTTAAATTT
1 AAATAATAAAATATAAATTT
8977308 AAATAATTAAAA-ATAAAT
1 AAATAA-TAAAATATAAAT
8977326 ATCTCAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATAATAAAATATAAATTT
Found at i:8977763 original size:21 final size:21
Alignment explanation
Indices: 8977730--8977769 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8977720 TAAAAAATAG
*
8977730 AAAGTAAACATATTTATATCA
1 AAAGTAAACATATATATATCA
* *
8977751 AAAGTATATATATATATAT
1 AAAGTAAACATATATATAT
8977770 ATAATAGTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAGTAAACATATATATATCA
Found at i:8978345 original size:10 final size:10
Alignment explanation
Indices: 8978330--8978356 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8978320 ATTTAAACTC
8978330 TATGTTATTA
1 TATGTTATTA
8978340 TATGTTATTA
1 TATGTTATTA
8978350 TATGTTA
1 TATGTTA
8978357 CTAAAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
TATGTTATTA
Found at i:8987364 original size:3 final size:3
Alignment explanation
Indices: 8987356--8987388 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8987346 TGGGTTAGGG
8987356 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8987389 AAATCTGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:9002628 original size:35 final size:35
Alignment explanation
Indices: 9002582--9002648 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
9002572 TGTCACGGGC
*
9002582 CACAGTCCAGACCCACCAGGAGGCTCAAGAGGTGA
1 CACAGTCCAGACCCACCAGGAGGCCCAAGAGGTGA
*
9002617 CACAGTCCAGACCCGCCAGGAGGCCCAAGAGG
1 CACAGTCCAGACCCACCAGGAGGCCCAAGAGG
9002649 GTGCCAGCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.30, C:0.34, G:0.30, T:0.06
Consensus pattern (35 bp):
CACAGTCCAGACCCACCAGGAGGCCCAAGAGGTGA
Found at i:9005080 original size:10 final size:10
Alignment explanation
Indices: 9005065--9005096 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
9005055 GTTAATTTAA
9005065 AAAAAATATT
1 AAAAAATATT
9005075 AAAAAATATT
1 AAAAAATATT
9005085 AAAAAA-ATT
1 AAAAAATATT
9005094 AAA
1 AAA
9005097 TTGAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 6 0.27
10 16 0.73
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (10 bp):
AAAAAATATT
Found at i:9032012 original size:49 final size:49
Alignment explanation
Indices: 9031918--9032021 Score: 156
Period size: 52 Copynumber: 2.1 Consensus size: 49
9031908 GATTGTAAAG
*
9031918 AATAATGTTCTATCTCTTTAATAATAATAATATCAAAGAAAAAAATATAGAA
1 AATAATGTTCTATCTCTTTAATAATAATAATATCAAAG--AAAAATA-AAAA
*
9031970 AATAATGTTCTATCTCTTTAATAATAATAGTATCAAAG-AAAATAAAAA
1 AATAATGTTCTATCTCTTTAATAATAATAATATCAAAGAAAAATAAAAA
9032018 AATA
1 AATA
9032022 TAGAAATAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
48 7 0.14
49 6 0.12
52 37 0.74
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.33
Consensus pattern (49 bp):
AATAATGTTCTATCTCTTTAATAATAATAATATCAAAGAAAAATAAAAA
Found at i:9032637 original size:2 final size:2
Alignment explanation
Indices: 9032630--9032670 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
9032620 GAAAAATGGA
9032630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9032671 GGAGTAAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9036436 original size:2 final size:2
Alignment explanation
Indices: 9036429--9036465 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
9036419 CCCTCAAAGA
9036429 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9036466 CCCAAAGTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9056409 original size:9 final size:9
Alignment explanation
Indices: 9056395--9056421 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
9056385 AAAAATAAAG
9056395 GAAGAAAAA
1 GAAGAAAAA
9056404 GAAGAAAAA
1 GAAGAAAAA
9056413 GAAGAAAAA
1 GAAGAAAAA
9056422 AGCAATGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:9065613 original size:29 final size:28
Alignment explanation
Indices: 9065581--9065652 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
9065571 TTAAGTGAGT
*
9065581 TTTTATTTTTTTATTATATTTAATCAAA
1 TTTTATTTTTTTATTATACTTAATCAAA
*
9065609 CTTTTA-TTTTTTATTATGCTTAATCAAA
1 -TTTTATTTTTTTATTATACTTAATCAAA
*
9065637 TTTTTTTATTTTTATT
1 TTTTATT-TTTTTATT
9065653 TTTATTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 4 0.11
28 21 0.55
29 13 0.34
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.67
Consensus pattern (28 bp):
TTTTATTTTTTTATTATACTTAATCAAA
Found at i:9065808 original size:21 final size:22
Alignment explanation
Indices: 9065765--9065813 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
9065755 AATAACATGT
*
9065765 TATTATATATAGTAACATGACA
1 TATTATATATAGTAACATAACA
* *
9065787 TATT-TATATTGTAAGATAACA
1 TATTATATATAGTAACATAACA
9065808 TGATTA
1 T-ATTA
9065814 CGTGATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (22 bp):
TATTATATATAGTAACATAACA
Found at i:9069478 original size:18 final size:18
Alignment explanation
Indices: 9069457--9069491 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9069447 CATATTCATC
*
9069457 TTTTTTTATTTGATTTAA
1 TTTTTTTACTTGATTTAA
9069475 TTTTTTTACTTGATTTA
1 TTTTTTTACTTGATTTA
9069492 TTAAATACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (18 bp):
TTTTTTTACTTGATTTAA
Found at i:9073553 original size:45 final size:47
Alignment explanation
Indices: 9073431--9073560 Score: 119
Period size: 45 Copynumber: 2.9 Consensus size: 47
9073421 ATAAGAATTA
* * *
9073431 AAAAAATAAAATATAATAAAATATAAAA--A-ATTAAAATTTATATAT
1 AAAAAATAAAAGAT-ATAAAATATAAAATTATAATAAAAATTATATAT
* * * * *
9073476 TATAAGTAAAAGAAATTAAA-ATAAAATATATAATAAAAATTATAT-T
1 AAAAAATAAAAGATATAAAATATAAAAT-TATAATAAAAATTATATAT
*
9073522 AAAAAATAAAA-ATATAAAATATAAAATTATAAGAAAAAT
1 AAAAAATAAAAGATATAAAATATAAAATTATAATAAAAAT
9073561 AAAAAATATG
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
43 6 0.09
44 5 0.08
45 26 0.39
46 17 0.26
47 12 0.18
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (47 bp):
AAAAAATAAAAGATATAAAATATAAAATTATAATAAAAATTATATAT
Found at i:9073564 original size:63 final size:62
Alignment explanation
Indices: 9073493--9073633 Score: 155
Period size: 66 Copynumber: 2.2 Consensus size: 62
9073483 AAAAGAAATT
*
9073493 AAAATAAAATATATAATAAAAAT-TATATTAAAAAATAA-A-AATATAAAATATAAAATTATAAG
1 AAAATAAAATATATAATAAAAATATAT-TTAAAAAATAATATAATATAAAA-AT-AAATCATAA-
9073555 A
62 A
* * *
9073556 AAAATAAAAAATATGATATTAAAAATATATTTAAAAAATAATATTATATAAAAATTAATCATAAA
1 AAAAT--AAAATAT-ATAATAAAAATATATTTAAAAAATAATATAATATAAAAATAAATCATAAA
9073621 AAAAT-AAATATAT
1 AAAATAAAATATAT
9073634 TAAATTTATA
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
61 2 0.03
62 6 0.09
63 5 0.07
65 13 0.19
66 28 0.41
67 6 0.09
68 8 0.12
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (62 bp):
AAAATAAAATATATAATAAAAATATATTTAAAAAATAATATAATATAAAAATAAATCATAAA
Found at i:9073566 original size:33 final size:31
Alignment explanation
Indices: 9073493--9073638 Score: 104
Period size: 33 Copynumber: 4.6 Consensus size: 31
9073483 AAAAGAAATT
*
9073493 AAAAT-AAAATATATAATAAAAATTATATTAA
1 AAAATAAAAATATAAAATAAAAATTATA-TAA
9073524 AAAATAAAAATATAAAATATAAAATTATA-AGA
1 AAAATAAAAATATAAAATA-AAAATTATATA-A
* * *
9073556 AAAATAAAAAATATGATATTAAAAATATATTTAA
1 AAAAT-AAAAATAT-AAAATAAAAAT-TATATAA
* *
9073590 AAAAT---AATATTATATAAAAATTAATCATAAA
1 AAAATAAAAATATAAAATAAAAATT-AT-AT-AA
* *
9073621 AAAATAAATATATTAAAT
1 AAAATAAAAATATAAAAT
9073639 TTATATTTTA
Statistics
Matches: 91, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
28 1 0.01
29 9 0.10
30 6 0.07
31 13 0.14
32 18 0.20
33 22 0.24
34 21 0.23
35 1 0.01
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (31 bp):
AAAATAAAAATATAAAATAAAAATTATATAA
Found at i:9073591 original size:12 final size:14
Alignment explanation
Indices: 9073562--9073601 Score: 50
Period size: 12 Copynumber: 3.1 Consensus size: 14
9073552 AAGAAAAATA
9073562 AAAAATATGATATT
1 AAAAATATGATATT
9073576 AAAAATAT-AT-TT
1 AAAAATATGATATT
*
9073588 AAAAA-ATAATATT
1 AAAAATATGATATT
9073601 A
1 A
9073602 TATAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.08
12 9 0.38
13 5 0.21
14 8 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
AAAAATATGATATT
Found at i:9073840 original size:13 final size:13
Alignment explanation
Indices: 9073822--9073846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9073812 TTACAATTAC
9073822 ATTATATTATATA
1 ATTATATTATATA
9073835 ATTATATTATAT
1 ATTATATTATAT
9073847 TATAAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTATATTATATA
Found at i:9073843 original size:18 final size:18
Alignment explanation
Indices: 9073816--9073850 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9073806 CATCATTTAC
9073816 AATTACATTATATTATAT
1 AATTACATTATATTATAT
*
9073834 AATTATATTATATTATA
1 AATTACATTATATTATA
9073851 AAATATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTACATTATATTATAT
Found at i:9077380 original size:21 final size:21
Alignment explanation
Indices: 9077356--9077399 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
9077346 GTTTACTGTA
9077356 TCTGTTTCCTTTTCAACTATT
1 TCTGTTTCCTTTTCAACTATT
*
9077377 TCTGTTTCCTTTTCAATTATT
1 TCTGTTTCCTTTTCAACTATT
9077398 TC
1 TC
9077400 ATTTGCTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.23, G:0.05, T:0.59
Consensus pattern (21 bp):
TCTGTTTCCTTTTCAACTATT
Found at i:9081885 original size:53 final size:53
Alignment explanation
Indices: 9081810--9081915 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 53
9081800 ATTTGAGCTT
* *
9081810 ACTCGAATTGGATGATTGAATGGATGGAAAATTTGACTGAAATCC-TCTATTTG
1 ACTCGAATTGGATGATTGAATGGATGGAAAATTAGACAGAAA-CCGTCTATTTG
* * *
9081863 ACTCTAATTGGGTGGTTGAATGGATGGAAAATTAGACAGAAACCGTCTATTTG
1 ACTCGAATTGGATGATTGAATGGATGGAAAATTAGACAGAAACCGTCTATTTG
9081916 TTATTTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.04
53 45 0.96
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (53 bp):
ACTCGAATTGGATGATTGAATGGATGGAAAATTAGACAGAAACCGTCTATTTG
Found at i:9084438 original size:17 final size:16
Alignment explanation
Indices: 9084416--9084461 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
9084406 CTTCTCTGTT
9084416 ATCATTAATTAATTATG
1 ATCATT-ATTAATTATG
*
9084433 ATCATT-TTAATT-TT
1 ATCATTATTAATTATG
9084447 ATCATTA-TAATTATG
1 ATCATTATTAATTATG
9084462 TTACAATGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 12 0.48
15 7 0.28
17 6 0.24
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (16 bp):
ATCATTATTAATTATG
Found at i:9085842 original size:2 final size:2
Alignment explanation
Indices: 9085823--9085856 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
9085813 TCAAATTAGC
* *
9085823 CT CT CC CT CT CC CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9085857 ATATATATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:9105680 original size:3 final size:3
Alignment explanation
Indices: 9105634--9105660 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9105624 TATTTTTAAT
9105634 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
9105661 AATCTAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9123800 original size:74 final size:74
Alignment explanation
Indices: 9123721--9123858 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 74
9123711 TTTTACATTT
* *
9123721 TTTTATATTATATTAATTTCATCTTTGAATTTC-GTACTCTATTCATATAGAAGATGCATGTCAA
1 TTTTATATTATATAAATTTCATCTTTGAATTTCAG-ACTCTATTCACATAGAAGATGCATGTCAA
9123785 ATTTAAAAAA
65 ATTTAAAAAA
* *
9123795 TTTTATATTATATAAATTTTATCTTTGAATTTCAGACTCTATTCACATAGAAGATGTATGTCAA
1 TTTTATATTATATAAATTTCATCTTTGAATTTCAGACTCTATTCACATAGAAGATGCATGTCAA
9123859 GTTCATAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
74 58 0.98
75 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.45
Consensus pattern (74 bp):
TTTTATATTATATAAATTTCATCTTTGAATTTCAGACTCTATTCACATAGAAGATGCATGTCAAA
TTTAAAAAA
Found at i:9125717 original size:10 final size:10
Alignment explanation
Indices: 9125689--9125722 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
9125679 TCCTCTAGCA
9125689 TTTTTTTTTAG
1 TTTTTTTTT-G
*
9125700 ATTTTTTTTG
1 TTTTTTTTTG
9125710 TTTTTTTTTG
1 TTTTTTTTTG
9125720 TTT
1 TTT
9125723 GGAAATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 13 0.62
11 8 0.38
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:9140883 original size:19 final size:19
Alignment explanation
Indices: 9140859--9140911 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
9140849 TGCTAATTAA
9140859 TTATTTATTTTTTATATTT
1 TTATTTATTTTTTATATTT
* *
9140878 TTATTT-TATTTAATATTT
1 TTATTTATTTTTTATATTT
*
9140896 TAAGTTATATTTTTTA
1 TTA-TT-TATTTTTTA
9140912 AGTTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 12 0.46
19 8 0.31
20 1 0.04
21 5 0.19
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTTATTTTTTATATTT
Found at i:9140924 original size:15 final size:15
Alignment explanation
Indices: 9140893--9140933 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
9140883 TTATTTAATA
*
9140893 TTTTAAGTT-ATATT
1 TTTTAAGTTAAAATT
9140907 TTTTAAGTTAAAATT
1 TTTTAAGTTAAAATT
*
9140922 TTTTAAATTAAA
1 TTTTAAGTTAAA
9140934 GACTGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (15 bp):
TTTTAAGTTAAAATT
Found at i:9141230 original size:108 final size:108
Alignment explanation
Indices: 9141099--9141309 Score: 343
Period size: 108 Copynumber: 2.0 Consensus size: 108
9141089 AGAAATTTTT
* * * * *
9141099 AGTAAATTTAAATAAAAAGTAAATTAGGTAAGAGTTGAATAATTTTAAAAGAATATGTTTTTGTA
1 AGTAAATTTAAATAAAAAGTAAATTAGATAAGAGTTAAATAATTTCAAAAGAATATATATTTGTA
*
9141164 AATTGTGAAAATTGTAACTAAATCAACATATTTTGTTAATTTG
66 AATTGTGAAAATTGTAACTAAATCAACATATTTAGTTAATTTG
9141207 AGTAAATTTAAATAAAATA-TAAATTAGATAAGAGTTAAATAATTTCAAAAGAATATATATTTGT
1 AGTAAATTTAAATAAAA-AGTAAATTAGATAAGAGTTAAATAATTTCAAAAGAATATATATTTGT
*
9141271 TAATTGTGAAAATTGTAACTAAATCAACATATTTAGTTA
65 AAATTGTGAAAATTGTAACTAAATCAACATATTTAGTTA
9141310 TTTTATATTA
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
108 94 0.99
109 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (108 bp):
AGTAAATTTAAATAAAAAGTAAATTAGATAAGAGTTAAATAATTTCAAAAGAATATATATTTGTA
AATTGTGAAAATTGTAACTAAATCAACATATTTAGTTAATTTG
Found at i:9148670 original size:31 final size:31
Alignment explanation
Indices: 9148605--9148670 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
9148595 ACAATGACAC
* * * *
9148605 ATTTAGGATTTTGTATTAAGACAGATTTAGG
1 ATTTAAGATTTTGTATTAAAACAGATTCAAG
*
9148636 ATTTAAGATTTTGTATTAAAATAGATTCAAG
1 ATTTAAGATTTTGTATTAAAACAGATTCAAG
9148667 ATTT
1 ATTT
9148671 TGTATTAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (31 bp):
ATTTAAGATTTTGTATTAAAACAGATTCAAG
Found at i:9158326 original size:21 final size:20
Alignment explanation
Indices: 9158292--9158331 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
9158282 TCTTTATTGT
9158292 TTCTTGGTTGCTTGCCTTTTC
1 TTCTTGGTTGCTTG-CTTTTC
* *
9158313 TTCTTTGTTTCTTGCTTTT
1 TTCTTGGTTGCTTGCTTTT
9158332 ACAATCTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.00, C:0.20, G:0.15, T:0.65
Consensus pattern (20 bp):
TTCTTGGTTGCTTGCTTTTC
Found at i:9175949 original size:25 final size:25
Alignment explanation
Indices: 9175907--9175955 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
9175897 CATTTTTCTT
9175907 TTCTTTTTTATGTGATGCTGCTGGA
1 TTCTTTTTTATGTGATGCTGCTGGA
* * *
9175932 TTCTTTTTTTTTTTATGCTGCTGG
1 TTCTTTTTTATGTGATGCTGCTGG
9175956 GTTTCTCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.08, C:0.12, G:0.20, T:0.59
Consensus pattern (25 bp):
TTCTTTTTTATGTGATGCTGCTGGA
Found at i:9181453 original size:2 final size:2
Alignment explanation
Indices: 9181408--9181442 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9181398 GTATTCGCAA
9181408 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
9181443 CCTGACTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:9202261 original size:30 final size:29
Alignment explanation
Indices: 9202227--9202324 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
9202217 CATGTGATAT
9202227 AAAAATGATTAAATATATTTTAATTAATAA
1 AAAAAT-ATTAAATATATTTTAATTAATAA
*
9202257 AAAAATAATT-AATTTA-TTTAATTTAA-AA
1 AAAAAT-ATTAAATATATTTTAA-TTAATAA
*
9202285 TAAAAAT-TTAAACATTATTTTAAATATAATAA
1 -AAAAATATTAAATA-TATTTT-AAT-TAATAA
9202317 AAATAATA
1 AAA-AATA
9202325 ATTTATTTAA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
27 2 0.04
28 9 0.17
29 17 0.31
30 13 0.24
31 8 0.15
32 5 0.09
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (29 bp):
AAAAATATTAAATATATTTTAATTAATAA
Found at i:9202274 original size:29 final size:29
Alignment explanation
Indices: 9202227--9202337 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 29
9202217 CATGTGATAT
* *
9202227 AAAAATGATTAAATATATTTTAATTAATAA
1 AAAAATAATTAAATTTATTTTAATT-ATAA
9202257 AAAAATAATT-AATTTA-TTTAATT-TAA
1 AAAAATAATTAAATTTATTTTAATTATAA
* *
9202283 AATAAA-AATTTAAACATTATTTTAAATATAA
1 AA-AAATAA-TTAAA-TTTATTTTAATTATAA
*
9202314 TAAAAATAA-T-AATTTATTTAAATT
1 -AAAAATAATTAAATTTATTTTAATT
9202338 CTTATTAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
26 7 0.11
27 5 0.08
28 18 0.27
29 10 0.15
30 16 0.24
31 6 0.09
32 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (29 bp):
AAAAATAATTAAATTTATTTTAATTATAA
Found at i:9202334 original size:57 final size:58
Alignment explanation
Indices: 9202225--9202334 Score: 154
Period size: 57 Copynumber: 1.9 Consensus size: 58
9202215 TTCATGTGAT
* *
9202225 ATAAAAATGATTAAATATATTTTAATTAATAAAAAAATAATTAATTTATTTAATTTAAA
1 ATAAAAAT-ATTAAACATATTTTAAATAATAAAAAAATAATTAATTTATTTAATTTAAA
9202284 ATAAAAAT-TTAAACATTATTTTAAAT-ATAATAAAAATAA-TAATTTATTTAA
1 ATAAAAATATTAAACA-TATTTTAAATAATAA-AAAAATAATTAATTTATTTAA
9202335 ATTCTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
57 22 0.47
58 17 0.36
59 8 0.17
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (58 bp):
ATAAAAATATTAAACATATTTTAAATAATAAAAAAATAATTAATTTATTTAATTTAAA
Found at i:9202347 original size:58 final size:59
Alignment explanation
Indices: 9202237--9202361 Score: 150
Period size: 58 Copynumber: 2.1 Consensus size: 59
9202227 AAAAATGATT
*
9202237 AAATATATTTTAATTAATAAAAAAATAATTAATTTATTTAATTTAAAAT-AAAAATTTAA
1 AAAT-TATTTTAAATAATAAAAAAATAATTAATTTATTTAATTTAAAATAAAAAATTTAA
* * *
9202296 ACATTATTTTAAAT-ATAATAAAAATAA-TAATTTATTTAAATTCT-TATTAAAAAATTTAA
1 AAATTATTTTAAATAATAA-AAAAATAATTAATTTATTT-AATT-TAAAATAAAAAATTTAA
9202355 AAATTAT
1 AAATTAT
9202362 ACTAAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
57 14 0.25
58 23 0.40
59 20 0.35
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (59 bp):
AAATTATTTTAAATAATAAAAAAATAATTAATTTATTTAATTTAAAATAAAAAATTTAA
Found at i:9212449 original size:2 final size:2
Alignment explanation
Indices: 9212442--9212479 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
9212432 ACATACATAC
9212442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9212480 CAAACAGAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9226804 original size:16 final size:16
Alignment explanation
Indices: 9226762--9226804 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
9226752 TGATTTCATT
*
9226762 AATAAATAAATTTGAA
1 AATAAATAATTTTGAA
** *
9226778 AATTGAGAATTTTGAA
1 AATAAATAATTTTGAA
9226794 AATAAATAATT
1 AATAAATAATT
9226805 ATAATAATTT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATAAATAATTTTGAA
Found at i:9247023 original size:2 final size:2
Alignment explanation
Indices: 9247016--9247042 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9247006 GCCTACGTAC
9247016 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9247043 GGAGATAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9253154 original size:2 final size:2
Alignment explanation
Indices: 9253149--9253196 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
9253139 AGAAAAAAAT
* * * *
9253149 TA TA TA TA AA TA TG TA TA TG TA TA CA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9253191 TA TA TA
1 TA TA TA
9253197 ATTGGTACTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:9260436 original size:24 final size:24
Alignment explanation
Indices: 9260404--9260452 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
9260394 GTTGGCTTAT
9260404 TATGAGATTATGCCTCAGTAGCAA
1 TATGAGATTATGCCTCAGTAGCAA
*
9260428 TATGAGATTATGTCTCAGTAGCAA
1 TATGAGATTATGCCTCAGTAGCAA
9260452 T
1 T
9260453 TAGACTGGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (24 bp):
TATGAGATTATGCCTCAGTAGCAA
Found at i:9270315 original size:22 final size:23
Alignment explanation
Indices: 9270276--9270348 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 23
9270266 CATTATCGGA
*
9270276 AAATAATTTATTAGAAATTTTTT
1 AAATAATTTATTAAAAATTTTTT
*
9270299 AAATATTTTA-TAAAAATTTTAATATTT
1 AAATAATTTATTAAAAA--TT--T-TTT
9270326 AAATAATTTATT-AAAATTTTTT
1 AAATAATTTATTAAAAATTTTTT
9270348 A
1 A
9270349 TTATTTAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
22 9 0.22
23 10 0.24
24 2 0.05
25 2 0.05
26 1 0.02
27 16 0.39
28 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (23 bp):
AAATAATTTATTAAAAATTTTTT
Found at i:9270348 original size:13 final size:13
Alignment explanation
Indices: 9270275--9270351 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 13
9270265 TCATTATCGG
*
9270275 AAAATAATTTATT
1 AAAATATTTTATT
*
9270288 AGAA-ATTTT-TT
1 AAAATATTTTATT
*
9270299 -AAATATTTTATA
1 AAAATATTTTATT
9270311 AAAAT-TTTAATATT
1 AAAATATTT--TATT
* *
9270325 TAAATAATTTATT
1 AAAATATTTTATT
*
9270338 AAAATTTTTTATT
1 AAAATATTTTATT
9270351 A
1 A
9270352 TTTAAATCAT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
10 2 0.04
11 7 0.15
12 8 0.17
13 22 0.46
14 7 0.15
15 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (13 bp):
AAAATATTTTATT
Found at i:9270357 original size:29 final size:29
Alignment explanation
Indices: 9270296--9270385 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 29
9270286 TTAGAAATTT
* * *
9270296 TTTAAATATTTTA-TAAAA-ATTTTAATA
1 TTTAAATAATTTATTAAAATTTTTTATTA
9270323 TTTAAATAATTTATTAAAATTTTTTATTA
1 TTTAAATAATTTATTAAAATTTTTTATTA
* * *
9270352 TTTAAATCATCTCATAAAAATATTTTTTATTA
1 TTTAAATAAT-TTAT-TAAA-ATTTTTTATTA
9270384 TT
1 TT
9270386 ATAATTGAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 12 0.23
28 5 0.10
29 16 0.31
30 3 0.06
31 3 0.06
32 13 0.25
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (29 bp):
TTTAAATAATTTATTAAAATTTTTTATTA
Found at i:9270731 original size:22 final size:22
Alignment explanation
Indices: 9270688--9270731 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
9270678 TAAAATATTT
*
9270688 TTTATTATAATTATTAACAAAA
1 TTTATTATAATTATAAACAAAA
*
9270710 TTTATT-TAATTTATAAATAAAA
1 TTTATTATAA-TTATAAACAAAA
9270732 ATTTTAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTATTATAATTATAAACAAAA
Found at i:9270786 original size:9 final size:10
Alignment explanation
Indices: 9270772--9270810 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
9270762 AATTGTTATT
9270772 TAATATT-AA
1 TAATATTAAA
9270781 TAATATTAAA
1 TAATATTAAA
9270791 TAAT-TTAAA
1 TAATATTAAA
*
9270800 TAAAATTAAA
1 TAATATTAAA
9270810 T
1 T
9270811 TAATTTAGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATATTAAA
Found at i:9270801 original size:19 final size:20
Alignment explanation
Indices: 9270779--9270817 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9270769 ATTTAATATT
*
9270779 AATAATATTAAA-TAATTTA
1 AATAAAATTAAATTAATTTA
9270798 AATAAAATTAAATTAATTTA
1 AATAAAATTAAATTAATTTA
9270818 GTCTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAAAATTAAATTAATTTA
Found at i:9271056 original size:20 final size:20
Alignment explanation
Indices: 9271005--9271096 Score: 90
Period size: 20 Copynumber: 4.8 Consensus size: 20
9270995 TATTTAACTT
*
9271005 TTAAATATCAATATTTTAAA
1 TTAAATATTAATATTTTAAA
9271025 TTAAA-A-T--T-TTTTAAA
1 TTAAATATTAATATTTTAAA
9271040 TTAAATATTAATATTTTAAA
1 TTAAATATTAATATTTTAAA
9271060 --AAATAGTTTTAATATTTTAAA
1 TTAAATA---TTAATATTTTAAA
*
9271081 TTAAATACTAATATTT
1 TTAAATATTAATATTT
9271097 ATTAACTAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 20
0.73 0.02 0.24
Matches are distributed among these distances:
15 12 0.20
16 2 0.03
17 1 0.02
18 5 0.08
19 2 0.03
20 20 0.33
21 13 0.22
23 5 0.08
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (20 bp):
TTAAATATTAATATTTTAAA
Found at i:9282801 original size:12 final size:12
Alignment explanation
Indices: 9282784--9282808 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9282774 TTTAGATGTA
9282784 TTATTTTATTTT
1 TTATTTTATTTT
9282796 TTATTTTATTTT
1 TTATTTTATTTT
9282808 T
1 T
9282809 AAATAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:9289810 original size:22 final size:22
Alignment explanation
Indices: 9289785--9289827 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9289775 TATTTTTTTG
*
9289785 AAAAATGTTAGTTA-TTAAATTT
1 AAAAA-GTTAATTACTTAAATTT
9289807 AAAAAGTTAATTACTTAAATT
1 AAAAAGTTAATTACTTAAATT
9289828 GTTTATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (22 bp):
AAAAAGTTAATTACTTAAATTT
Found at i:9295928 original size:23 final size:23
Alignment explanation
Indices: 9295891--9295937 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
9295881 TAAAATTAAG
9295891 TAAATTTTTTCTTTT-TTAATAAT
1 TAAATTTTTTCTTTTATTAA-AAT
9295914 TAAATTTTTAT-TTTTATTAAAAT
1 TAAATTTTT-TCTTTTATTAAAAT
9295937 T
1 T
9295938 TTAATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TAAATTTTTTCTTTTATTAAAAT
Found at i:9295932 original size:17 final size:17
Alignment explanation
Indices: 9295912--9295946 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9295902 TTTTTTAATA
* *
9295912 ATTAAATTTTTATTTTT
1 ATTAAAATTTTAATTTT
9295929 ATTAAAATTTTAATTTT
1 ATTAAAATTTTAATTTT
9295946 A
1 A
9295947 ATAATTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTAAAATTTTAATTTT
Found at i:9296004 original size:14 final size:14
Alignment explanation
Indices: 9295979--9296012 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9295969 AGTATTAGTA
*
9295979 TAATTTTTTATTTT
1 TAATTTTGTATTTT
*
9295993 TTATTTTGTATTTT
1 TAATTTTGTATTTT
9296007 TAATTT
1 TAATTT
9296013 ATATTTTCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (14 bp):
TAATTTTGTATTTT
Found at i:9296046 original size:14 final size:15
Alignment explanation
Indices: 9296029--9296062 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9296019 TCACTTGAAA
9296029 ATTTAAAA-ATTAAT
1 ATTTAAAATATTAAT
9296043 ATTTTAAAATATTAAT
1 A-TTTAAAATATTAAT
9296059 ATTT
1 ATTT
9296063 TATTTACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.06
15 10 0.56
16 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTAAAATATTAAT
Found at i:9296050 original size:15 final size:16
Alignment explanation
Indices: 9296030--9296064 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
9296020 CACTTGAAAA
9296030 TTTAAAA-ATTAATAT
1 TTTAAAATATTAATAT
9296045 TTTAAAATATTAATAT
1 TTTAAAATATTAATAT
9296061 TTTA
1 TTTA
9296065 TTTACAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTAAAATATTAATAT
Found at i:9296653 original size:30 final size:30
Alignment explanation
Indices: 9296619--9296685 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
9296609 TGGTAGAGTC
*
9296619 AAAATTTAAAATTTGA-AGGGATGAAAATAA
1 AAAATTTAAAATTTGAGA-GAATGAAAATAA
* *
9296649 AAAATTTAATATTTGAGAGAATGAAAATAT
1 AAAATTTAAAATTTGAGAGAATGAAAATAA
9296679 AAAATTT
1 AAAATTT
9296686 TAACTATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.31
Consensus pattern (30 bp):
AAAATTTAAAATTTGAGAGAATGAAAATAA
Found at i:9297555 original size:196 final size:196
Alignment explanation
Indices: 9296831--9297805 Score: 1486
Period size: 196 Copynumber: 5.0 Consensus size: 196
9296821 AGCTATAACT
* * *
9296831 AGCCACCAATATCCACATTTTTTT-TGTTTGTTTGGTTTTTTAA-TCAATATGTTGTTTTTCGTC
1 AGCCACCAATATCCACATTTTTTTAT-TTT-TTTAGTTTTTTAAGT-AATATGTTATTTATCGTC
* * *
9296894 ACTCGTTTTTTATTATACATCGCATGTATGATATAATTTAATGCGTTATTGTTCATATAATCAAT
63 ACTCGTTCTTTATGATACATCGCATGTATGATATAATTTAACGCGTTATTGTTCATATAATCAAT
* * * * *
9296959 TGTTATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAATTTATGTGGCCATATTGAGGTT
128 TGTCATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTT
9297024 GAAA
193 GAAA
* *
9297028 AGCCACCAATATCCACATTTTTTTTATTTTTTTCGTTTTTTAAGCAATATGTTATTTATCGTCAC
1 AGCCACCAATATCCACA-TTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCAC
* * * *
9297093 TCGTTCTTTATGATACATCGTATGTATGATATAATTTAACGCATTATTATTCATATAACCAATTG
65 TCGTTCTTTATGATACATCGCATGTATGATATAATTTAACGCGTTATTGTTCATATAATCAATTG
*
9297158 TCATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAAGTTGA
130 TCATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGA
9297223 AA
195 AA
*
9297225 AGCCACCAATATCCACA------T-TTTTTTTA-TTTTTTAAGTAATATGTTATTTATCATCACT
1 AGCCACCAATATCCACATTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCACT
* * * * *
9297282 CGTTCTTTATGAAACATTGCATGTATGATATAATTTAACGCGTTATTATTTACATAATCAATTGT
66 CGTTCTTTATGATACATCGCATGTATGATATAATTTAACGCGTTATTGTTCATATAATCAATTGT
9297347 CATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGAA
131 CATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGAA
9297412 A
196 A
*
9297413 AGCCACCAATATCCATATTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCACT
1 AGCCACCAATATCCACATTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCACT
*
9297478 CGTTCTTTATGATACATCGCATGTATGATATAATTTAACACGTTATTGTTCATATAATCAATTGT
66 CGTTCTTTATGATACATCGCATGTATGATATAATTTAACGCGTTATTGTTCATATAATCAATTGT
* * *
9297543 CATAACGCTCTTCTTCTTCTTTAACATTTTTACATAAAAAGTCATGCGACGATATTGAGGTTGAA
131 CATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGAA
9297608 A
196 A
* *
9297609 AGCCACCAATATCCACA-TTTTTTATTTTTTTAGTTTTTTAAGTAATATATTATTTATCGCCACT
1 AGCCACCAATATCCACATTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCACT
* * *
9297673 CGTTCTTTATGATACATTGCATATAATGATATAATTTAACACGTTATTGTTCATATAATCAATTG
66 CGTTCTTTATGATACATCGCATGT-ATGATATAATTTAACGCGTTATTGTTCATATAATCAATTG
* * * *
9297738 TCATAACGCTCTTCTTCTTCTTTAACATTTTTACATAAAAAATCATGTGACTATATTGAGGTTGA
130 TCATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGA
9297803 AA
195 AA
9297805 A
1 A
9297806 CCCCAACCCA
Statistics
Matches: 719, Mismatches: 47, Indels: 25
0.91 0.06 0.03
Matches are distributed among these distances:
188 168 0.23
189 7 0.01
190 1 0.00
194 1 0.00
195 75 0.10
196 273 0.38
197 183 0.25
198 10 0.01
199 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45
Consensus pattern (196 bp):
AGCCACCAATATCCACATTTTTTTATTTTTTTAGTTTTTTAAGTAATATGTTATTTATCGTCACT
CGTTCTTTATGATACATCGCATGTATGATATAATTTAACGCGTTATTGTTCATATAATCAATTGT
CATAATGCTCTTCTTCTTCTTTAACATTTTTGCATAAAAAGTCATGTGACGATATTGAGGTTGAA
A
Found at i:9297586 original size:384 final size:388
Alignment explanation
Indices: 9296865--9297805 Score: 1469
Period size: 384 Copynumber: 2.4 Consensus size: 388
9296855 TGTTTGTTTG
* * * * *
9296865 GTTTTTTAA-TCAATATGTTGTTTTTCGTCACTCGTTTTTTATTATACATCGCATGTATGATATA
1 GTTTTTTAAGT-AATATGTTATTTATCGTCACTCGTTCTTTATGATACATTGCATGTATGATATA
* *
9296929 ATTTAATGCGTTATTGTTCATATAATCAATTGTTATAATGCTCTTCTTCTTCTTTAACATTTTTG
65 ATTTAACGCGTTATTGTTCATATAATCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTTTG
* * *
9296994 CATAAAAATTTATGTGGCCATATTGAGGTTGAAAAGCCACCAATATCCACATTTTTTTTATTTTT
130 CATAAAAAATCATGTGACCATATTGAGGTTGAAAAGCCACCAATATCCACATTTTTTTTATTTTT
* *
9297059 TTCGTTTTTTAAGCAATATGTTATTTATCGTCACTCGTTCTTTATGATACATCGTATGTATGATA
195 TTAGTTTTTTAAGCAATATGTTATTTATCGTCACTCGTTCTTTATGATACATCGCATGTATGATA
* *
9297124 TAATTTAACGCATTATTATTCATATAACCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTT
260 TAATTTAACACATTATTATTCATATAACCAATTGTCATAACGCTCTTCTTCTTCTTTAACATTTT
* *
9297189 TGCATAAAAAGTCATGTGACGATATTGAAGTTGAAAAGCCACCAATATCCACA-T-TTTTTTTA
325 TACATAAAAAGTCATGCGACGATATTGAAGTTGAAAAGCCACCAATATCCACATTATTTTTTTA
* *
9297251 -TTTTTTAAGTAATATGTTATTTATCATCACTCGTTCTTTATGAAACATTGCATGTATGATATAA
1 GTTTTTTAAGTAATATGTTATTTATCGTCACTCGTTCTTTATGATACATTGCATGTATGATATAA
* * *
9297315 TTTAACGCGTTATTATTTACATAATCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTTTGC
66 TTTAACGCGTTATTGTTCATATAATCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTTTGC
* * *
9297380 ATAAAAAGTCATGTGACGATATTGAGGTTGAAAAGCCACCAATATCCATA-TTTTTTTATTTTTT
131 ATAAAAAATCATGTGACCATATTGAGGTTGAAAAGCCACCAATATCCACATTTTTTTTATTTTTT
*
9297444 TAGTTTTTTAAGTAATATGTTATTTATCGTCACTCGTTCTTTATGATACATCGCATGTATGATAT
196 TAGTTTTTTAAGCAATATGTTATTTATCGTCACTCGTTCTTTATGATACATCGCATGTATGATAT
* * *
9297509 AATTTAACACGTTATTGTTCATATAATCAATTGTCATAACGCTCTTCTTCTTCTTTAACATTTTT
261 AATTTAACACATTATTATTCATATAACCAATTGTCATAACGCTCTTCTTCTTCTTTAACATTTTT
*
9297574 ACATAAAAAGTCATGCGACGATATTGAGGTTGAAAAGCCACCAATATCCACATTTTTTATTTTTT
326 ACATAAAAAGTCATGCGACGATATTGAAGTTGAAAAGCCACCAATATCCACA----TTATTTTTT
9297639 TA
387 TA
* * *
9297641 GTTTTTTAAGTAATATATTATTTATCGCCACTCGTTCTTTATGATACATTGCATATAATGATATA
1 GTTTTTTAAGTAATATGTTATTTATCGTCACTCGTTCTTTATGATACATTGCATGT-ATGATATA
* * *
9297706 ATTTAACACGTTATTGTTCATATAATCAATTGTCATAACGCTCTTCTTCTTCTTTAACATTTTTA
65 ATTTAACGCGTTATTGTTCATATAATCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTTTG
*
9297771 CATAAAAAATCATGTGACTATATTGAGGTTGAAAA
130 CATAAAAAATCATGTGACCATATTGAGGTTGAAAA
9297806 CCCCAACCCA
Statistics
Matches: 505, Mismatches: 41, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
384 185 0.37
385 160 0.32
386 1 0.00
389 1 0.00
390 8 0.02
391 50 0.10
392 100 0.20
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (388 bp):
GTTTTTTAAGTAATATGTTATTTATCGTCACTCGTTCTTTATGATACATTGCATGTATGATATAA
TTTAACGCGTTATTGTTCATATAATCAATTGTCATAATGCTCTTCTTCTTCTTTAACATTTTTGC
ATAAAAAATCATGTGACCATATTGAGGTTGAAAAGCCACCAATATCCACATTTTTTTTATTTTTT
TAGTTTTTTAAGCAATATGTTATTTATCGTCACTCGTTCTTTATGATACATCGCATGTATGATAT
AATTTAACACATTATTATTCATATAACCAATTGTCATAACGCTCTTCTTCTTCTTTAACATTTTT
ACATAAAAAGTCATGCGACGATATTGAAGTTGAAAAGCCACCAATATCCACATTATTTTTTTA
Found at i:9300446 original size:34 final size:34
Alignment explanation
Indices: 9300403--9300478 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
9300393 TTTCAGTAGC
* *
9300403 AAATATTACATCCT-AAGGGTAAAGTTTTAATATT
1 AAATATTACA-CATCAAGGCTAAAGTTTTAATATT
* **
9300437 AAATGTTACACATCAAGGCTAAAGTTTTAATACC
1 AAATATTACACATCAAGGCTAAAGTTTTAATATT
9300471 AAATATTA
1 AAATATTA
9300479 TATGTCATGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 2 0.06
34 33 0.94
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (34 bp):
AAATATTACACATCAAGGCTAAAGTTTTAATATT
Found at i:9327942 original size:34 final size:34
Alignment explanation
Indices: 9327862--9327942 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
9327852 AGGAATGAAG
* *
9327862 CTTTGGCATGTAATATCTAGTGCTAAAATTTTGA
1 CTTTGACATGTAATATCTAGTGCTAAAACTTTGA
* ** * *
9327896 CCTTGATGTGTAATAT-TTGATGCTAAAGCTTTGA
1 CTTTGACATGTAATATCTAG-TGCTAAAACTTTGA
9327930 CTTTGACATGTAA
1 CTTTGACATGTAA
9327943 CGTCTTCTGT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
33 2 0.06
34 34 0.94
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (34 bp):
CTTTGACATGTAATATCTAGTGCTAAAACTTTGA
Found at i:9355584 original size:13 final size:13
Alignment explanation
Indices: 9355566--9355592 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9355556 AGCTGATATT
9355566 CCCCACCTTGTTG
1 CCCCACCTTGTTG
9355579 CCCCACCTTGTTG
1 CCCCACCTTGTTG
9355592 C
1 C
9355593 TGCTTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.48, G:0.15, T:0.30
Consensus pattern (13 bp):
CCCCACCTTGTTG
Found at i:9360163 original size:2 final size:2
Alignment explanation
Indices: 9360156--9360185 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9360146 ATAAAATTAA
9360156 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9360186 CTACTATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9368825 original size:35 final size:33
Alignment explanation
Indices: 9368779--9368849 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 33
9368769 TAAAGGTCAC
* *
9368779 AAGTTCAAATTCCCCTTTTACCAACTAGTCAGAAA
1 AAGTTAAAATTCCCC-ATTACCAACTA-TCAGAAA
* *
9368814 AAGTTAAAATTCCCCATTCCCAACTATCAGAGA
1 AAGTTAAAATTCCCCATTACCAACTATCAGAAA
9368847 AAG
1 AAG
9368850 AAAGCAAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 9 0.28
34 9 0.28
35 14 0.44
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.25
Consensus pattern (33 bp):
AAGTTAAAATTCCCCATTACCAACTATCAGAAA
Found at i:9427798 original size:3 final size:3
Alignment explanation
Indices: 9427790--9427823 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
9427780 CTCTTCCTCA
9427790 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
9427824 GTTTAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:9436798 original size:2 final size:2
Alignment explanation
Indices: 9436791--9436817 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9436781 ATGACCATGG
9436791 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9436818 ATAGGTCCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9448570 original size:18 final size:18
Alignment explanation
Indices: 9448555--9448594 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9448545 TATTATTTCT
*
9448555 TTTTTTCTTTTTATTTTA
1 TTTTTTATTTTTATTTTA
9448573 TTTTTTATTTTTATTTTA
1 TTTTTTATTTTTATTTTA
9448591 TTTT
1 TTTT
9448595 GAGACTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTATTTTTATTTTA
Found at i:9448776 original size:18 final size:17
Alignment explanation
Indices: 9448750--9448788 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
9448740 AATGGTTAAT
* *
9448750 TTATGGTTATTTATGAA
1 TTATGGTTACTTATAAA
9448767 TTATGTGTTACTTATAAA
1 TTATG-GTTACTTATAAA
9448785 TTAT
1 TTAT
9448789 TTGTGAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.54
Consensus pattern (17 bp):
TTATGGTTACTTATAAA
Found at i:9456273 original size:23 final size:22
Alignment explanation
Indices: 9456220--9456275 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
9456210 TTAAATTTAT
9456220 TTTTTATATT-AAAGTTAAAATA
1 TTTTTAT-TTAAAAGTTAAAATA
* * *
9456242 ATTTAATTTAAAATTTAAAATA
1 TTTTTATTTAAAAGTTAAAATA
9456264 TTTTTAATTTAA
1 TTTTT-ATTTAA
9456276 TTTTTTTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.07
22 19 0.70
23 6 0.22
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTTTATTTAAAAGTTAAAATA
Found at i:9457085 original size:18 final size:19
Alignment explanation
Indices: 9457054--9457093 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
9457044 CCTTTTTACT
* *
9457054 TTTTTATTTATTTTTTATA
1 TTTTTAATTATTTTTAATA
9457073 TTTTTAATT-TTTTTAATA
1 TTTTTAATTATTTTTAATA
9457091 TTT
1 TTT
9457094 CAAATTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTAATTATTTTTAATA
Found at i:9457795 original size:31 final size:30
Alignment explanation
Indices: 9457752--9457830 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
9457742 TTTTTAAAAT
*
9457752 ATTTTTT-AATTTAATCCAT-TAACATCTCA
1 ATTTTTTCAATTTAATCCATGTAACATAT-A
* *
9457781 ATTTTATTCAATTTAATCTATGTAATATATA
1 ATTTT-TTCAATTTAATCCATGTAACATATA
*
9457812 TTTTTGTTCAATTTAATCC
1 ATTTT-TTCAATTTAATCC
9457831 TTATGATGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 5 0.12
30 2 0.05
31 28 0.68
32 6 0.15
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.52
Consensus pattern (30 bp):
ATTTTTTCAATTTAATCCATGTAACATATA
Found at i:9459087 original size:17 final size:17
Alignment explanation
Indices: 9459051--9459083 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9459041 AAAAATAAAA
9459051 AAATATTTTAAAGATAT
1 AAATATTTTAAAGATAT
9459068 AAATATTTTAAA-ATAT
1 AAATATTTTAAAGATAT
9459084 TAAAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
AAATATTTTAAAGATAT
Found at i:9459092 original size:17 final size:17
Alignment explanation
Indices: 9459050--9459092 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
9459040 AAAAAATAAA
9459050 AAAATATTTTAAAGATAT
1 AAAA-ATTTTAAAGATAT
*
9459068 AAATATTTTAAA-ATATT
1 AAAAATTTTAAAGATA-T
9459085 AAAAATTT
1 AAAAATTT
9459093 ATTTATTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.14
17 16 0.73
18 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (17 bp):
AAAAATTTTAAAGATAT
Found at i:9465712 original size:32 final size:32
Alignment explanation
Indices: 9465676--9465738 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9465666 ACCACAAAGA
* *
9465676 TTACACAAATGCAATTATAGACAATTACATGC
1 TTACACAAATGCAATTACACACAATTACATGC
*
9465708 TTACACAAATGCAATTACACATAATTACATG
1 TTACACAAATGCAATTACACACAATTACATG
9465739 ACTTGATGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (32 bp):
TTACACAAATGCAATTACACACAATTACATGC
Found at i:9472725 original size:38 final size:38
Alignment explanation
Indices: 9472682--9472760 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
9472672 GATAGCATAT
9472682 TGGAGAGGGTTGCTAGCTTACACTAGAAGCCTAGACAA
1 TGGAGAGGGTTGCTAGCTTACACTAGAAGCCTAGACAA
9472720 TGGAGAGGGTTGCTAGCTTACACTAGAAGCCTAGACAA
1 TGGAGAGGGTTGCTAGCTTACACTAGAAGCCTAGACAA
9472758 TGG
1 TGG
9472761 CGACAGAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (38 bp):
TGGAGAGGGTTGCTAGCTTACACTAGAAGCCTAGACAA
Found at i:9477148 original size:29 final size:28
Alignment explanation
Indices: 9477106--9477165 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
9477096 TATTATATTA
9477106 AAAATCATAATAT-CTTAGAAAAAATAATT
1 AAAATCATAATATCCTT--AAAAAATAATT
* * *
9477135 AAAATGATACTATCCTTACAAAATAATT
1 AAAATCATAATATCCTTAAAAAATAATT
9477163 AAA
1 AAA
9477166 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 13 0.48
29 11 0.41
30 3 0.11
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (28 bp):
AAAATCATAATATCCTTAAAAAATAATT
Found at i:9479589 original size:2 final size:2
Alignment explanation
Indices: 9479578--9479608 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9479568 TTTGCATTTT
9479578 GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
9479609 TAATAGTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:9487170 original size:27 final size:27
Alignment explanation
Indices: 9487121--9487176 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
9487111 TATAATTTAC
**
9487121 ATATTCTATACTTATTCCTTTAGAAAA
1 ATATTCTATACTTATTCAGTTAGAAAA
* * *
9487148 ATATTCTATATTTATTTAGTTAGTAAA
1 ATATTCTATACTTATTCAGTTAGAAAA
9487175 AT
1 AT
9487177 GGGATAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (27 bp):
ATATTCTATACTTATTCAGTTAGAAAA
Found at i:9502378 original size:31 final size:30
Alignment explanation
Indices: 9502311--9502382 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
9502301 TTTATATTTT
9502311 ATTTAATTTAA-TTTTTATATTTAAAATTA
1 ATTTAATTTAATTTTTTATATTTAAAATTA
**
9502340 AAATAATTTAATTTTTTA-ATTATAAAAATTA
1 ATTTAATTTAATTTTTTATATT-T-AAAATTA
*
9502371 TTTTAATTTAAT
1 ATTTAATTTAAT
9502383 CAAATGGCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 12 0.34
30 7 0.20
31 16 0.46
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTTAATTTAATTTTTTATATTTAAAATTA
Found at i:9503175 original size:21 final size:18
Alignment explanation
Indices: 9503150--9503190 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
9503140 TATTTGTAAA
9503150 TATTTATACAATTGTATTTTG
1 TATTTATA-AATT-T-TTTTG
9503171 TATTTATAAATTTTTTTG
1 TATTTATAAATTTTTTTG
9503189 TA
1 TA
9503191 GATCCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 1 0.05
20 4 0.20
21 8 0.40
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (18 bp):
TATTTATAAATTTTTTTG
Found at i:9506881 original size:69 final size:69
Alignment explanation
Indices: 9506769--9506909 Score: 273
Period size: 69 Copynumber: 2.0 Consensus size: 69
9506759 ATTTGGTGGC
*
9506769 TTAGTGTTTGAAGGATGATTGGAGTTCAAAAACTCTATTGAGGATATATTAAGTTTAGATCTTAG
1 TTAGTGTTTGAAGGATGATTGGAGTTCAAAAACTCTATCGAGGATATATTAAGTTTAGATCTTAG
9506834 CATT
66 CATT
9506838 TTAGTGTTTGAAGGATGATTGGAGTTCAAAAACTCTATCGAGGATATATTAAGTTTAGATCTTAG
1 TTAGTGTTTGAAGGATGATTGGAGTTCAAAAACTCTATCGAGGATATATTAAGTTTAGATCTTAG
9506903 CATT
66 CATT
9506907 TTA
1 TTA
9506910 TGATAATGAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (69 bp):
TTAGTGTTTGAAGGATGATTGGAGTTCAAAAACTCTATCGAGGATATATTAAGTTTAGATCTTAG
CATT
Found at i:9522161 original size:2 final size:2
Alignment explanation
Indices: 9522149--9522186 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
9522139 ATGCACGTTA
* *
9522149 CT CT TT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9522187 GTGTCTGTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
CT
Found at i:9529858 original size:3 final size:3
Alignment explanation
Indices: 9529850--9529890 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
9529840 ACCATATGAG
9529850 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9529891 CAGTAGTCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9530835 original size:22 final size:22
Alignment explanation
Indices: 9530807--9530851 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9530797 TGGCCCTTAC
9530807 ATAACATTATTTGAGGAATTTG
1 ATAACATTATTTGAGGAATTTG
9530829 ATAACATTATTTGAGGAATTTG
1 ATAACATTATTTGAGGAATTTG
9530851 A
1 A
9530852 AGTCAACAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (22 bp):
ATAACATTATTTGAGGAATTTG
Done.