Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397256.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_56.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13963513
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 99179 characters in sequence are not A, C, G, or T
File 25 of 29
Found at i:10829403 original size:209 final size:209
Alignment explanation
Indices: 10828920--10829537 Score: 812
Period size: 210 Copynumber: 3.0 Consensus size: 209
10828910 TAATTATATA
* * * *
10828920 TATATATAAGAAACTAATGATATAATTTATATGTTATAATGTTTTATATCAAAGTTTGTATAAAA
1 TATATATATGAAATTAATGATATAAATTATATGTTATAATGTTTTATATCAAAGTTTGTATAAAT
* * * * *
10828985 AATAACTAATTATAAACAATATGTTATAAAATCTAAAGAGATAGCTAATAAATTTATTAAGTGTA
66 AATAACTAATTATAAATAATATATTATAAAATCTAAAGTGATAACTAATAAAGTTATTAAGTGTA
* * * **
10829050 ATCATATAAATAAAGTTTATTATAAGTTGTCATAATACTTATGTATAAATTAAATATATGCATAT
131 ATCATATAAATAAAGTTTATTATAAGTTATAATAATGCTTATGTATAAATTAAATATATTAATAT
10829115 ATAATTTATTATTT
196 ATAATTTATTATTT
* * * *
10829129 TATTATATAT-ATAATTAATAATACAAATTATATGCTAAAATGTTTTATATCAAAGTTTGTATAA
1 TA-TATATATGA-AATTAATGATATAAATTATATGTTATAATGTTTTATATCAAAGTTTGTATAA
* * * *
10829193 ATAGTAACTAATTATAAATAATATATTATAAAATTTAAGGTGATAACTAATAAAGTTATTAAATG
64 ATAATAACTAATTATAAATAATATATTATAAAATCTAAAGTGATAACTAATAAAGTTATTAAGTG
* *
10829258 TAATCATAT-AATAAAGTCTATTACAAGTTATAATAATGCTTATGTATAAATTAAATATATATAA
129 TAATCATATAAATAAAGTTTATTATAAGTTATAATAATGCTTATGTATAAATTAAATATAT-TAA
* *
10829322 TATATGACTTT-TTTTTT
193 TATAT-AATTTATTATTT
* * * *
10829339 TATATATATGAAATTAATGACATAACTTATATGTTATAATATTTTATATCAAAGTTTATATAAAT
1 TATATATATGAAATTAATGATATAAATTATATGTTATAATGTTTTATATCAAAGTTTGTATAAAT
* * *
10829404 AATAATTAAGTATAAATAATATATTATAAAATCTAAAGTGATAACTAATAAAGTTTTTAAGTGTA
66 AATAACTAATTATAAATAATATATTATAAAATCTAAAGTGATAACTAATAAAGTTATTAAGTGTA
* * * * * *
10829469 ATTATATAAACAAAGTTTATTATAAATTATAGTAATGTTTATGTATAAGTTAAATATATGT-ATA
131 ATCATATAAATAAAGTTTATTATAAGTTATAATAATGCTTATGTATAAATTAAATATAT-TAATA
10829533 TATAA
195 TATAA
10829538 AATATTTATA
Statistics
Matches: 352, Mismatches: 51, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
208 1 0.00
209 172 0.49
210 175 0.50
211 4 0.01
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (209 bp):
TATATATATGAAATTAATGATATAAATTATATGTTATAATGTTTTATATCAAAGTTTGTATAAAT
AATAACTAATTATAAATAATATATTATAAAATCTAAAGTGATAACTAATAAAGTTATTAAGTGTA
ATCATATAAATAAAGTTTATTATAAGTTATAATAATGCTTATGTATAAATTAAATATATTAATAT
ATAATTTATTATTT
Found at i:10829693 original size:21 final size:22
Alignment explanation
Indices: 10829652--10829698 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
10829642 TTATAATATT
10829652 AATATATAAATTATATCATTTAA
1 AATATATAAATTATA-CATTTAA
* *
10829675 AATATATAACTTATA-ATTTTA
1 AATATATAAATTATACATTTAA
10829696 AAT
1 AAT
10829699 TAATATAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
AATATATAAATTATACATTTAA
Found at i:10829704 original size:23 final size:23
Alignment explanation
Indices: 10829670--10829714 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
10829660 AATTATATCA
10829670 TTTAAAATATATA-ACTTATAAT
1 TTTAAAATATATAGACTTATAAT
* *
10829692 TTTAAATTAATATAGATTTATAA
1 TTTAAAAT-ATATAGACTTATAA
10829715 ATAAATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 5 0.26
24 7 0.37
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTAAAATATATAGACTTATAAT
Found at i:10835301 original size:24 final size:24
Alignment explanation
Indices: 10835233--10835301 Score: 61
Period size: 29 Copynumber: 2.7 Consensus size: 24
10835223 AATTTATGTT
*
10835233 ATTTTTTAATTTT-AATTAATTTA
1 ATTTTTTAATTTTAAAATAATTTA
10835256 A-TTTTTATATTTAAAATCAAAATAATTTA
1 ATTTTTTA-ATTT----T-AAAATAATTTA
10835285 ATTTTTTAATTTTAAAA
1 ATTTTTTAATTTTAAAA
10835302 ATTGAATCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 15
0.70 0.02 0.28
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 1 0.03
27 1 0.03
29 14 0.38
30 6 0.16
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTTTTAATTTTAAAATAATTTA
Found at i:10837076 original size:30 final size:29
Alignment explanation
Indices: 10837024--10837114 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 29
10837014 TGGAAGGGAG
*
10837024 ATTAAATTGATATAATTTTTAAA-ATTAAAAA
1 ATTAAATT-ATATAAATTTTAAATA-T-AAAA
*
10837055 ATTAAATTATTTAAATTTTAAATATAAAA
1 ATTAAATTATATAAATTTTAAATATAAAA
* **
10837084 ATTAAATTAAATAAATTAAAAAATATAAAA
1 ATTAAATTATATAAATT-TTAAATATAAAA
10837114 A
1 A
10837115 CTGGATAGGT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
29 19 0.37
30 24 0.46
31 9 0.17
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (29 bp):
ATTAAATTATATAAATTTTAAATATAAAA
Found at i:10837087 original size:29 final size:30
Alignment explanation
Indices: 10837024--10837114 Score: 96
Period size: 29 Copynumber: 3.0 Consensus size: 30
10837014 TGGAAGGGAG
*
10837024 ATTAAATTGATATAATTTTTAAAATTAAAAA
1 ATTAAATT-ATATAAATTTTAAAATTAAAAA
*
10837055 ATTAAATTATTTAAATTTT-AAA-TATAAAA
1 ATTAAATTATATAAATTTTAAAATTA-AAAA
* **
10837084 ATTAAATTAAATAAATTAAAAAATATAAAAA
1 ATTAAATTATATAAATTTTAAAAT-TAAAAA
10837115 CTGGATAGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
28 2 0.04
29 22 0.44
30 12 0.24
31 12 0.24
32 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (30 bp):
ATTAAATTATATAAATTTTAAAATTAAAAA
Found at i:10838946 original size:12 final size:12
Alignment explanation
Indices: 10838924--10838962 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
10838914 TACAATGTTT
10838924 AATATATAAATAA
1 AATA-ATAAATAA
10838937 AATAATAAATAA
1 AATAATAAATAA
10838949 AAT-ATAAA-AA
1 AATAATAAATAA
10838959 AATA
1 AATA
10838963 TTATAGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.20
11 5 0.20
12 11 0.44
13 4 0.16
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAATAAATAA
Found at i:10839087 original size:27 final size:25
Alignment explanation
Indices: 10839056--10839149 Score: 52
Period size: 25 Copynumber: 3.6 Consensus size: 25
10839046 TTTATATTTT
10839056 TTATTATTAATTTTTATATAATATTA
1 TTATT-TTAATTTTTATATAATATTA
*
10839082 TCTA-TTAAATATATTT-T-TAATATTA
1 T-TATTTTAAT-T-TTTATATAATATTA
* **
10839107 TATATTTT-ATTTTTATTTCTTATTA
1 T-TATTTTAATTTTTATATAATATTA
*
10839132 TAATTTTATATATTTTAT
1 TTATTTTA-AT-TTTTAT
10839150 TTTTATTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
23 3 0.06
24 7 0.13
25 24 0.45
26 8 0.15
27 11 0.21
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATTTTAATTTTTATATAATATTA
Found at i:10839129 original size:7 final size:6
Alignment explanation
Indices: 10839111--10839197 Score: 66
Period size: 6 Copynumber: 13.7 Consensus size: 6
10839101 ATATTATATA
* * *
10839111 TTTTAT TTTTAT TTCTTAT TATAAT TTTATAT ATTTTAT TTTTAT TTTTAA
1 TTTTAT TTTTAT TT-TTAT TTTTAT TTT-TAT -TTTTAT TTTTAT TTTTAT
* * * *
10839162 TATAATT TTTTAT ATTATAT ATTTAT TTTTAT TTTT
1 TTTTA-T TTTTAT -TTTTAT TTTTAT TTTTAT TTTT
10839198 TTCTTATAGA
Statistics
Matches: 62, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
6 41 0.66
7 18 0.29
8 3 0.05
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTTAT
Found at i:10839130 original size:70 final size:70
Alignment explanation
Indices: 10839044--10839195 Score: 184
Period size: 70 Copynumber: 2.2 Consensus size: 70
10839034 AAATTTAATA
* *
10839044 TATTTATATTTTTTATTATTAATTTT-TATATAATATTATCTA-TTAAATAT-ATTTTTAATATT
1 TATTTTTATTTCTTATTA-TAATTTTATATATAATATT-TCTATTTAAATATAATTTTTAATATT
10839106 ATATATTT
64 ATATA-TT
** * * *
10839114 TATTTTTATTTCTTATTATAATTTTATATATTTTATTTTTATTTTTAATATAATTTTTTATATTA
1 TATTTTTATTTCTTATTATAATTTTATATATAATATTTCTA-TTTAAATATAATTTTTAATATTA
10839179 TATATT
65 TATATT
10839185 TATTTTTATTT
1 TATTTTTATTT
10839196 TTTTCTTATA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
69 10 0.14
70 25 0.35
71 20 0.28
72 16 0.23
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (70 bp):
TATTTTTATTTCTTATTATAATTTTATATATAATATTTCTATTTAAATATAATTTTTAATATTAT
ATATT
Found at i:10839143 original size:33 final size:32
Alignment explanation
Indices: 10839099--10839194 Score: 138
Period size: 32 Copynumber: 3.0 Consensus size: 32
10839089 AATATATTTT
*
10839099 TAATATTATATATTTTATTTTTATTTCTTATTA
1 TAATTTTATATATTTTATTTTTATTT-TTATTA
*
10839132 TAATTTTATATATTTTATTTTTATTTTTAATA
1 TAATTTTATATATTTTATTTTTATTTTTATTA
* * *
10839164 TAATTTTTTATATTATATATTTATTTTTATT
1 TAATTTTATATATTTTATTTTTATTTTTATT
10839195 TTTTTCTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 32 0.56
33 25 0.44
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (32 bp):
TAATTTTATATATTTTATTTTTATTTTTATTA
Found at i:10839180 original size:39 final size:39
Alignment explanation
Indices: 10839089--10839197 Score: 128
Period size: 33 Copynumber: 3.0 Consensus size: 39
10839079 TTATCTATTA
*
10839089 AATAT-ATTTTTAATATTATATATTTTATTTTTATTTCTT
1 AATATAATTTTTTATATTATATATTTTATTTTTATTT-TT
*
10839128 ATTATAA-----T-T-TTATATATTTTATTTTTATTTTT
1 AATATAATTTTTTATATTATATATTTTATTTTTATTTTT
10839160 AATATAATTTTTTATATTATATA-TTTATTTTTATTTTT
1 AATATAATTTTTTATATTATATATTTTATTTTTATTTTT
10839198 TTCTTATAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 17
0.75 0.04 0.22
Matches are distributed among these distances:
32 8 0.14
33 21 0.36
34 1 0.02
37 1 0.02
38 16 0.27
39 11 0.19
40 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (39 bp):
AATATAATTTTTTATATTATATATTTTATTTTTATTTTT
Found at i:10839198 original size:39 final size:39
Alignment explanation
Indices: 10839089--10839198 Score: 128
Period size: 32 Copynumber: 3.0 Consensus size: 39
10839079 TTATCTATTA
* *
10839089 AATAT-ATTTTTAATATTATATATTTTATTTTTATTTCTT
1 AATATAATTTTTTATATTATATA-TTTATTTTTATTTTTT
*
10839128 ATTATAA---TTT-TA-TATAT-TTTATTTTTA-TTTTT
1 AATATAATTTTTTATATTATATATTTATTTTTATTTTTT
10839160 AATATAATTTTTTATATTATATATTTATTTTTATTTTTT
1 AATATAATTTTTTATATTATATATTTATTTTTATTTTTT
10839199 TCTTATAGAA
Statistics
Matches: 59, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
32 10 0.17
33 10 0.17
35 8 0.14
36 4 0.07
37 7 0.12
38 10 0.17
39 9 0.15
40 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (39 bp):
AATATAATTTTTTATATTATATATTTATTTTTATTTTTT
Found at i:10841318 original size:21 final size:21
Alignment explanation
Indices: 10841289--10841342 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
10841279 AGGTTTTAGG
*
10841289 TATTACGTGACTGACTTTGGA
1 TATTGCGTGACTGACTTTGGA
10841310 TATTGCGTGACTGACTTTGGA
1 TATTGCGTGACTGACTTTGGA
*
10841331 TATTGTGTGACT
1 TATTGCGTGACT
10841343 AATTTTTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.13, G:0.26, T:0.41
Consensus pattern (21 bp):
TATTGCGTGACTGACTTTGGA
Found at i:10841408 original size:23 final size:23
Alignment explanation
Indices: 10841354--10841419 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
10841344 ATTTTTAAGT
*
10841354 ATTACATGACTAGTTAGT-AGGC
1 ATTACATGACTTGTTAGTAAGGC
*
10841376 ATTGCATGACTTGTTAGTAAGGC
1 ATTACATGACTTGTTAGTAAGGC
**
10841399 ATTATGTGACTAT-TTAGTAAG
1 ATTACATGACT-TGTTAGTAAG
10841420 ACATCGTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 16 0.43
23 20 0.54
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (23 bp):
ATTACATGACTTGTTAGTAAGGC
Found at i:10842379 original size:29 final size:28
Alignment explanation
Indices: 10842347--10842402 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
10842337 GACTAAAAAT
10842347 AATTAAAATTATAAAAAAGTATATTTTTA
1 AATTAAAATTATAAAAAAGT-TATTTTTA
* * *
10842376 AATTGAGATTATAAGAAAGTTATTTTT
1 AATTAAAATTATAAAAAAGTTATTTTT
10842403 CATAATTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (28 bp):
AATTAAAATTATAAAAAAGTTATTTTTA
Found at i:10850877 original size:21 final size:21
Alignment explanation
Indices: 10850836--10850887 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
10850826 TATTTTTATT
* * *
10850836 TATAA-ATTTTTTATAATTAA
1 TATAATATTTATTAAAAATAA
10850856 TATAATATTTATTAAAAATAA
1 TATAATATTTATTAAAAATAA
10850877 TCA-AATATTTA
1 T-ATAATATTTA
10850888 AAATATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.19
21 21 0.78
22 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TATAATATTTATTAAAAATAA
Found at i:10851886 original size:58 final size:58
Alignment explanation
Indices: 10851794--10851909 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
10851784 CCATGTGGGT
*
10851794 CTGACCTGTAAAGTAAAGCTTCTCTTATGTCTTAATTATCTTTCACGACCTTCTTGTA
1 CTGACCTGTAAAGTAAAGCTTCTCTTATGCCTTAATTATCTTTCACGACCTTCTTGTA
10851852 CTGACCTGTAAAGTAAAGCTTCTCTTATGCCTTAATTATCTTTCACGACCTTCTTGTA
1 CTGACCTGTAAAGTAAAGCTTCTCTTATGCCTTAATTATCTTTCACGACCTTCTTGTA
10851910 GGCCACTCGG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.41
Consensus pattern (58 bp):
CTGACCTGTAAAGTAAAGCTTCTCTTATGCCTTAATTATCTTTCACGACCTTCTTGTA
Found at i:10862985 original size:2 final size:2
Alignment explanation
Indices: 10862978--10863007 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
10862968 AGAATCTTTG
*
10862978 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10863008 GTGATTTGCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:10865220 original size:26 final size:28
Alignment explanation
Indices: 10865155--10865221 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
10865145 TAAACAAATT
* * *
10865155 TTTTTTGAACATAACATTTAACAACAAC
1 TTTTTTGAATATGACATGTAACAACAAC
* *
10865183 ATTTTTAAATATGACATGTAACAA-AA-
1 TTTTTTGAATATGACATGTAACAACAAC
10865209 TTTTTTGAATATG
1 TTTTTTGAATATG
10865222 GTGTGTAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
26 11 0.34
27 2 0.06
28 19 0.59
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (28 bp):
TTTTTTGAATATGACATGTAACAACAAC
Found at i:10865267 original size:26 final size:26
Alignment explanation
Indices: 10865230--10865283 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
10865220 TGGTGTGTAA
*
10865230 TAATAATATTTTTTAAATAAGATGTG
1 TAATAATATTTTTTAAACAAGATGTG
* * *
10865256 TAATAATTTTTTTTCAACATGATGTG
1 TAATAATATTTTTTAAACAAGATGTG
10865282 TA
1 TA
10865284 TCGAGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (26 bp):
TAATAATATTTTTTAAACAAGATGTG
Found at i:10865328 original size:31 final size:32
Alignment explanation
Indices: 10865261--10865329 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
10865251 ATGTGTAATA
* *
10865261 ATTTTTTTTCAACATGATGTGTATCGAGAAAT
1 ATTTTTTTTCAACATGATATGAATCGAGAAAT
*
10865293 -TTTTTTTTCAACATGGTATGAATC-A-ACAAT
1 ATTTTTTTTCAACATGATATGAATCGAGA-AAT
10865323 ATTTTTT
1 ATTTTTT
10865330 AATTATGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.03
30 4 0.12
31 27 0.84
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (32 bp):
ATTTTTTTTCAACATGATATGAATCGAGAAAT
Found at i:10865799 original size:33 final size:33
Alignment explanation
Indices: 10865734--10865800 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
10865724 ATGTCATGTT
* * *
10865734 ATAATCAATTATGATATGTTAATATGTCACATC
1 ATAATCAATTATAATATGTTAACATATCACATC
* * *
10865767 ATAATTAATTATAATATTTTAACATATTACATC
1 ATAATCAATTATAATATGTTAACATATCACATC
10865800 A
1 A
10865801 ATATTATGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.42
Consensus pattern (33 bp):
ATAATCAATTATAATATGTTAACATATCACATC
Found at i:10865882 original size:31 final size:29
Alignment explanation
Indices: 10865846--10865950 Score: 124
Period size: 29 Copynumber: 3.6 Consensus size: 29
10865836 ATTATTAATC
10865846 ATAAAAATTTATTTAACTTAAAATAAAAAAT
1 ATAAAAATTTATTTAA-TTAAAAT-AAAAAT
* *
10865877 ATAAAAATTTATTTGATTTAAATAAAAAT
1 ATAAAAATTTATTTAATTAAAATAAAAAT
* *
10865906 ATAAAGATTTGA-TT-ATATATAATAAAAAT
1 ATAAAAATTT-ATTTAAT-TAAAATAAAAAT
10865935 ATAAAAATTTATTTAA
1 ATAAAAATTTATTTAA
10865951 AATTTTTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
28 3 0.05
29 38 0.59
30 8 0.12
31 15 0.23
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (29 bp):
ATAAAAATTTATTTAATTAAAATAAAAAT
Found at i:10866666 original size:15 final size:15
Alignment explanation
Indices: 10866646--10866725 Score: 62
Period size: 15 Copynumber: 5.5 Consensus size: 15
10866636 TAATATTATA
10866646 ATTAAAATAAAAAAT
1 ATTAAAATAAAAAAT
*
10866661 ATTAAAATAAAATAT
1 ATTAAAATAAAAAAT
*
10866676 A-TAATAT-AAAAAT
1 ATTAAAATAAAAAAT
*
10866689 CA-AAAAATAAAATAA-
1 -ATTAAAATAAAA-AAT
* *
10866704 AATAAAAT-ATAAAT
1 ATTAAAATAAAAAAT
10866718 ATTAAAAT
1 ATTAAAAT
10866726 TTGTATAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
13 7 0.13
14 20 0.38
15 23 0.44
16 2 0.04
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTAAAATAAAAAAT
Found at i:10866671 original size:5 final size:5
Alignment explanation
Indices: 10866648--10866718 Score: 51
Period size: 5 Copynumber: 14.4 Consensus size: 5
10866638 ATATTATAAT
* * * *
10866648 TAAAA TAAAA -AATAT TAAAA TAAAA T-ATA TAATA TAAAA -ATCAA -AAAA
1 TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA TAAAA TAAAA TA-AAA TAAAA
10866696 TAAAA TAAAA TAAAA TATAAA TA
1 TAAAA TAAAA TAAAA TA-AAA TA
10866719 TTAAAATTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
4 8 0.15
5 39 0.72
6 7 0.13
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.25
Consensus pattern (5 bp):
TAAAA
Found at i:10866715 original size:7 final size:7
Alignment explanation
Indices: 10866648--10866725 Score: 54
Period size: 7 Copynumber: 10.9 Consensus size: 7
10866638 ATATTATAAT
10866648 TAAAATA
1 TAAAATA
*
10866655 AAAAATA
1 TAAAATA
*
10866662 TTAAA-A
1 TAAAATA
10866668 TAAAATA
1 TAAAATA
*
10866675 TATAATA
1 TAAAATA
10866682 TAAAA-A
1 TAAAATA
*
10866688 TCAAAAAA
1 T-AAAATA
10866696 TAAAATAAAA
1 TAAAAT---A
10866706 TAAAATA
1 TAAAATA
10866713 T-AAATA
1 TAAAATA
10866719 TTAAAAT
1 -TAAAAT
10866726 TTGTATAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
6 12 0.21
7 31 0.55
8 6 0.11
10 7 0.12
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:10866784 original size:40 final size:40
Alignment explanation
Indices: 10866634--10866802 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 40
10866624 AAAAATATTT
* * * * *
10866634 TATAATATTATAATTAAAATAAAAAATATTAAAATAAAATA
1 TATAATATTAAAAATAATATTAAAAA-ATGAAAATAAAATA
*
10866675 TATAATA-TAAAAATCAA-A-AAATAAAAT-AAAATAAAATA
1 TATAATATTAAAAAT-AATATTAA-AAAATGAAAATAAAATA
10866713 TA-AATATTAAAATTTGTATAATATGGGTAAAAAATGAAAATAAAATA
1 TATAATATTAAAA-----ATAATAT---TAAAAAATGAAAATAAAATA
*
10866760 TATAATATTAAAAATTATATTAAAAAATGAAAATAAAATA
1 TATAATATTAAAAATAATATTAAAAAATGAAAATAAAATA
10866800 TAT
1 TAT
10866803 TAAATTATAA
Statistics
Matches: 109, Mismatches: 4, Indels: 31
0.76 0.03 0.22
Matches are distributed among these distances:
37 4 0.04
38 18 0.17
39 5 0.05
40 32 0.29
41 9 0.08
42 2 0.02
43 9 0.08
46 5 0.05
47 15 0.14
48 10 0.09
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (40 bp):
TATAATATTAAAAATAATATTAAAAAATGAAAATAAAATA
Found at i:10866804 original size:28 final size:28
Alignment explanation
Indices: 10866773--10866849 Score: 82
Period size: 33 Copynumber: 2.6 Consensus size: 28
10866763 AATATTAAAA
*
10866773 ATTATATTAAAAAATGAAAATAAAATAT
1 ATTATATTAAAAAATAAAAATAAAATAT
*
10866801 ATTAAATTATAATAAGAAGTAAAAATAAAATAT
1 ATTATA-T-TAA-AA-AA-TAAAAATAAAATAT
*
10866834 ATGATATTAAAAAATA
1 ATTATATTAAAAAATA
10866850 TTTAATAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
28 7 0.17
29 3 0.08
30 5 0.12
31 5 0.12
32 3 0.08
33 17 0.43
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (28 bp):
ATTATATTAAAAAATAAAAATAAAATAT
Found at i:10866808 original size:33 final size:33
Alignment explanation
Indices: 10866749--10866835 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
10866739 GTAAAAAATG
* * *
10866749 AAAATAAAATATATAATAT-TAAAAATTATATTAA
1 AAAATAAAA-ATAAAATATAT-TAAATTATAATAA
*
10866783 AAAATGAAAATAAAATATATTAAATTATAATAA
1 AAAATAAAAATAAAATATATTAAATTATAATAA
* *
10866816 GAAGTAAAAATAAAATATAT
1 AAAATAAAAATAAAATATAT
10866836 GATATTAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
33 36 0.80
34 9 0.20
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (33 bp):
AAAATAAAAATAAAATATATTAAATTATAATAA
Found at i:10866878 original size:24 final size:23
Alignment explanation
Indices: 10866820--10866879 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
10866810 TAATAAGAAG
* *
10866820 TAAAAATAAAATATATGATATTAA
1 TAAAAAT-TAATAGATGATATTAA
10866844 -AAAATATTTAATAGATGATATTATA
1 TAAAA-A-TTAATAGATGATATTA-A
10866869 TAAAAATTAAT
1 TAAAAATTAAT
10866880 TATAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
23 4 0.13
24 19 0.63
25 3 0.10
26 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TAAAAATTAATAGATGATATTAA
Found at i:10867085 original size:15 final size:15
Alignment explanation
Indices: 10867048--10867091 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
10867038 ATTATTTTTT
10867048 TTATAATCATATTAC
1 TTATAATCATATTAC
*
10867063 TTACAATCATATTAC
1 TTATAATCATATTAC
* *
10867078 TTGTAATCAAATTA
1 TTATAATCATATTA
10867092 TATTGTACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (15 bp):
TTATAATCATATTAC
Found at i:10873747 original size:15 final size:15
Alignment explanation
Indices: 10873727--10873756 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10873717 ACTTCATAAT
10873727 GTAATGTGATTACAA
1 GTAATGTGATTACAA
10873742 GTAATGTGATTACAA
1 GTAATGTGATTACAA
10873757 AGGAGATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
GTAATGTGATTACAA
Found at i:10874018 original size:20 final size:20
Alignment explanation
Indices: 10873976--10874061 Score: 75
Period size: 20 Copynumber: 4.3 Consensus size: 20
10873966 TGTCATATAT
* * *
10873976 TTTTTTATTTTTTATTATCA
1 TTTTTTATATTTTATTTTTA
10873996 TTTTTTATATTTTATTTTTA
1 TTTTTTATATTTTATTTTTA
* * *
10874016 TTTCTTA-ATATAATTTTTTA
1 TTTTTTATATTTTA-TTTTTA
* * *
10874036 TATTATATATTTTATTTTAA
1 TTTTTTATATTTTATTTTTA
10874056 TTTTTT
1 TTTTTT
10874062 TCTTTGAATA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
19 4 0.08
20 42 0.84
21 4 0.08
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTATATTTTATTTTTA
Found at i:10874032 original size:33 final size:33
Alignment explanation
Indices: 10873977--10874052 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
10873967 GTCATATATT
* * * *
10873977 TTTTTATTTTTTATTATCATTTTTTATATTTTA
1 TTTTTATTTCTTAATATAATTTTTTATATTATA
10874010 TTTTTATTTCTTAATATAATTTTTTATATTATA
1 TTTTTATTTCTTAATATAATTTTTTATATTATA
10874043 TATTTTATTT
1 T-TTTTATTT
10874053 TAATTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
33 30 0.79
34 8 0.21
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (33 bp):
TTTTTATTTCTTAATATAATTTTTTATATTATA
Found at i:10875810 original size:20 final size:19
Alignment explanation
Indices: 10875787--10875825 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10875777 TTTAACTTAA
10875787 AATATTAAAAAATAAAAAAT
1 AATATT-AAAAATAAAAAAT
* *
10875807 AATATTTAAATTAAAAAAT
1 AATATTAAAAATAAAAAAT
10875826 TAATGTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AATATTAAAAATAAAAAAT
Found at i:10875829 original size:20 final size:20
Alignment explanation
Indices: 10875770--10875829 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
10875760 AAAAACTTTT
* *
10875770 ATTAATATTTAACTTAAAAT
1 ATTAATATTTAAATTAAAAA
10875790 ATTAA-A---AAA-TAAAAA
1 ATTAATATTTAAATTAAAAA
10875805 A-TAATATTTAAATTAAAAA
1 ATTAATATTTAAATTAAAAA
10875824 ATTAAT
1 ATTAAT
10875830 GTCAAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 3 0.09
15 7 0.22
16 2 0.06
18 3 0.09
19 8 0.25
20 9 0.28
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTAATATTTAAATTAAAAA
Found at i:10878024 original size:24 final size:25
Alignment explanation
Indices: 10877985--10878033 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
10877975 TACTGTCCAT
*
10877985 CCTTTTCAAATGCCTTAATTCTCTC
1 CCTTTTCAAATACCTTAATTCTCTC
10878010 CCTTTT-AAATACCTTAATTCTCTC
1 CCTTTTCAAATACCTTAATTCTCTC
10878034 TTGATAGCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.45
Consensus pattern (25 bp):
CCTTTTCAAATACCTTAATTCTCTC
Found at i:10886584 original size:10 final size:10
Alignment explanation
Indices: 10886569--10886593 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10886559 CATCCAATGC
10886569 ATATACGCAT
1 ATATACGCAT
10886579 ATATACGCAT
1 ATATACGCAT
10886589 ATATA
1 ATATA
10886594 TGTTCATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (10 bp):
ATATACGCAT
Found at i:10892607 original size:2 final size:2
Alignment explanation
Indices: 10892600--10892627 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10892590 CATATTTGTT
10892600 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10892628 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10897556 original size:26 final size:28
Alignment explanation
Indices: 10897526--10897578 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
10897516 AAAAAAATTT
*
10897526 AATT-ATTTTAAATT-TTATTTTTTATG
1 AATTAATTTTAAATTATTATTTATTATG
*
10897552 AATTAATTTTAATTTATTATTTATTAT
1 AATTAATTTTAAATTATTATTTATTAT
10897579 TTATATAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 9 0.39
28 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (28 bp):
AATTAATTTTAAATTATTATTTATTATG
Found at i:10897577 original size:21 final size:21
Alignment explanation
Indices: 10897521--10897577 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
10897511 TTATCAAAAA
*
10897521 AATTTAATTATTT-TAAATTTT
1 AATTT-ATTATTTATTAATTTT
* **
10897542 -ATTTTTTATGAATTAATTTT
1 AATTTATTATTTATTAATTTT
10897562 AATTTATTATTTATTA
1 AATTTATTATTTATTA
10897578 TTTATATAAG
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
19 4 0.15
20 11 0.41
21 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
AATTTATTATTTATTAATTTT
Found at i:10908739 original size:2 final size:2
Alignment explanation
Indices: 10908734--10908758 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10908724 AACTTTTTTA
10908734 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
10908759 AAAGAAACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10914150 original size:49 final size:49
Alignment explanation
Indices: 10914069--10914183 Score: 185
Period size: 49 Copynumber: 2.3 Consensus size: 49
10914059 CAAGATAACA
* * *
10914069 GCTCACGTGTGGTCAAAATTACATATCTAAAACTAATAATTTATAATAT
1 GCTCATGTGTGGTCAAAATTACACATCCAAAACTAATAATTTATAATAT
*
10914118 GCTCATGTGTGGTCTAAATTACACATCCAAAACTAATAATTTATAATAT
1 GCTCATGTGTGGTCAAAATTACACATCCAAAACTAATAATTTATAATAT
*
10914167 GCACATGTGTGGTCAAA
1 GCTCATGTGTGGTCAAA
10914184 GGAAAACCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 60 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (49 bp):
GCTCATGTGTGGTCAAAATTACACATCCAAAACTAATAATTTATAATAT
Found at i:10928140 original size:21 final size:21
Alignment explanation
Indices: 10928114--10928158 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
10928104 TTAATAATTA
*
10928114 TATTTA-AAATGTAAAGTTAAT
1 TATTTATAAA-GTAAAGATAAT
*
10928135 TATTTATAAAGTAATGATAAT
1 TATTTATAAAGTAAAGATAAT
10928156 TAT
1 TAT
10928159 GATTGAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (21 bp):
TATTTATAAAGTAAAGATAAT
Found at i:10932898 original size:2 final size:2
Alignment explanation
Indices: 10932891--10932917 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10932881 TAAACGATTT
10932891 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10932918 CAAAGAGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10934173 original size:44 final size:46
Alignment explanation
Indices: 10934084--10934174 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 46
10934074 NNNNNNNNAT
* * **
10934084 TAAATTATAAATAAATATTACTATTTAAATTATTAATTATTAATAAAA
1 TAAATTATAAAT--ATATTACTATTTAAATAATAAATTAAAAATAAAA
*
10934132 TAAATTATAAAT-TATTCCTATTTAAA-AATAAATTAAAAATAAA
1 TAAATTATAAATATATTACTATTTAAATAATAAATTAAAAATAAA
10934175 TAAGCATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
44 13 0.34
45 13 0.34
48 12 0.32
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (46 bp):
TAAATTATAAATATATTACTATTTAAATAATAAATTAAAAATAAAA
Found at i:10934256 original size:27 final size:28
Alignment explanation
Indices: 10934204--10934392 Score: 86
Period size: 27 Copynumber: 6.6 Consensus size: 28
10934194 ATTATATATA
*
10934204 TAATA-TTAATAATTAAATCATCAATTAT
1 TAATATTTAA-AAATAAATCATCAATTAT
* * *
10934232 TAATATTT-TAAATAAATTATGAATTAT
1 TAATATTTAAAAATAAATCATCAATTAT
* **
10934259 TAATATTTAAAAATAAAACAAAAAGTTAAT
1 TAATATTTAAAAATAAATCATCAA-TT-AT
* * *
10934289 CATAATAATATTTAAATTAAAT-A--AAATAT
1 --TAAT-AT-TTAAAAATAAATCATCAATTAT
* * *
10934318 TAATATTTTAAAATATTAATGATTTAATTAT
1 TAATA-TTTAAAA-ATAAATCA-TCAATTAT
* **
10934349 TAATATTT-TAAATAAAGAATCAATT-T
1 TAATATTTAAAAATAAATCATCAATTAT
10934375 GTAATATTTAAAAATAAA
1 -TAATATTTAAAAATAAA
10934393 ATAAAATAAA
Statistics
Matches: 122, Mismatches: 23, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
26 7 0.06
27 45 0.37
28 28 0.23
29 8 0.07
30 6 0.05
31 12 0.10
32 4 0.03
33 3 0.02
34 9 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (28 bp):
TAATATTTAAAAATAAATCATCAATTAT
Found at i:10934329 original size:16 final size:16
Alignment explanation
Indices: 10934310--10934360 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
10934300 TTAAATTAAA
10934310 TAAAATATTAATATTT
1 TAAAATATTAATATTT
10934326 TAAAATATTAATGA-TT
1 TAAAATATTAAT-ATTT
*
10934342 T-AATTATTAATATTT
1 TAAAATATTAATATTT
10934357 TAAA
1 TAAA
10934361 TAAAGAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 1 0.03
15 12 0.39
16 17 0.55
17 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TAAAATATTAATATTT
Found at i:10934358 original size:15 final size:15
Alignment explanation
Indices: 10934312--10934362 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
10934302 AAATTAAATA
10934312 AAATATTAATATTTT
1 AAATATTAATATTTT
10934327 AAAATATTAATGA-TTT
1 -AAATATTAAT-ATTTT
*
10934343 AATTATTAATATTTT
1 AAATATTAATATTTT
10934358 AAATA
1 AAATA
10934363 AAGAATCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 1 0.03
15 16 0.52
16 13 0.42
17 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AAATATTAATATTTT
Found at i:10934363 original size:117 final size:121
Alignment explanation
Indices: 10934226--10934476 Score: 343
Period size: 123 Copynumber: 2.1 Consensus size: 121
10934216 TTAAATCATC
** * * *
10934226 AATTATTAATATTTTAAATAAATTATGAATTAT-TAATATTTAAAAAT-AA-AACA-AAA-AGTT
1 AATTATTAATATTTTAAATAAAGAATCAATT-TGTAATATTTAAAAATAAATAAAATAAACAATT
* *
10934286 AATCATAATAATA-TTTAAATTAAATAAAATATTAATATTTTAAAATATTAATGATTT
65 AATCATAATAATACTTT-AATTAAATAAAATATTAATATTTTAAAATATTAATGACTA
10934343 AATTATTAATATTTTAAATAAAGAATCAATTTGTAATATTTAAAAATAAAATAAAATAAACTAAT
1 AATTATTAATATTTTAAATAAAGAATCAATTTGTAATATTTAAAAAT-AAATAAAATAAAC-AAT
*
10934408 TTATCATAATAATACTTTAATTAAATAAAATATTAATATTTTAAAATATTAATGACTA
64 TAATCATAATAATACTTTAATTAAATAAAATATTAATATTTTAAAATATTAATGACTA
*
10934466 AATTATAAATA
1 AATTATTAATA
10934477 AATATTAATA
Statistics
Matches: 117, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
116 1 0.01
117 42 0.36
119 2 0.02
120 3 0.03
121 3 0.03
123 63 0.54
124 3 0.03
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (121 bp):
AATTATTAATATTTTAAATAAAGAATCAATTTGTAATATTTAAAAATAAATAAAATAAACAATTA
ATCATAATAATACTTTAATTAAATAAAATATTAATATTTTAAAATATTAATGACTA
Found at i:10934506 original size:155 final size:150
Alignment explanation
Indices: 10934343--10934670 Score: 450
Period size: 149 Copynumber: 2.1 Consensus size: 150
10934333 TTAATGATTT
*
10934343 AATTATTAATATTTTAAATAAAGAATCAATT-TGTAATATTT-AAAAATAAAATAAAATAAACTA
1 AATTATTAATATTTTAAATAAACAATCAATTAT-TAATATTTAAAAAATAAAA-AAAA-AAA--A
*
10934406 ATTTATCATA-ATAATACTTT-AATTAAATAAAATATTAATATTTTAAAATATTAATGACTAAAT
61 ATTAATCA-AGATAATA-TTTAAATT--A-AAAATATTAATATTTTAAAATATTAATGACTAAAT
*
10934469 TATAAAT-AAATATTAATATTTAAATGGTC
121 TATAAATAAAATATTAATATTTAAATGATC
* *
10934498 AATTATTAATATTTTAAATAAACTATCAATTATTAATATTTAAAAAATAAAACAAAAAAAATTAA
1 AATTATTAATATTTTAAATAAACAATCAATTATTAATATTTAAAAAATAAAAAAAAAAAAATTAA
*
10934563 TCAAGATAATATTTAAATTAAAAATATTAATATTTTAAAATATTAATGATTAAATTATAAATAAA
66 TCAAGATAATATTTAAATTAAAAATATTAATATTTTAAAATATTAATGACTAAATTATAAATAAA
*
10934628 ATATTAATATTTAAATTATC
131 ATATTAATATTTAAATGATC
*
10934648 AATTATTAATATTTGAAAATAAA
1 AATTATTAATATTT-TAAATAAA
10934671 ATAAAATAAA
Statistics
Matches: 159, Mismatches: 8, Indels: 16
0.87 0.04 0.09
Matches are distributed among these distances:
149 41 0.26
150 35 0.22
151 11 0.07
152 18 0.11
154 3 0.02
155 40 0.25
156 11 0.07
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (150 bp):
AATTATTAATATTTTAAATAAACAATCAATTATTAATATTTAAAAAATAAAAAAAAAAAAATTAA
TCAAGATAATATTTAAATTAAAAATATTAATATTTTAAAATATTAATGACTAAATTATAAATAAA
ATATTAATATTTAAATGATC
Found at i:10934516 original size:41 final size:41
Alignment explanation
Indices: 10934428--10934519 Score: 98
Period size: 41 Copynumber: 2.2 Consensus size: 41
10934418 AATACTTTAA
*
10934428 TTAAATAAAATATTAATATTTTAAAATATTAATGACTAAATT
1 TTAAAT-AAATATTAATATTTTAAAATATCAATGACTAAATT
* * * *
10934470 ATAAATAAATATTAATA-TTT-AAATGGTCAATTATTAATATT
1 TTAAATAAATATTAATATTTTAAAAT-ATCAATGACTAA-ATT
10934511 TTAAATAAA
1 TTAAATAAA
10934520 CTATCAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
39 4 0.10
40 11 0.26
41 22 0.52
42 5 0.12
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.42
Consensus pattern (41 bp):
TTAAATAAATATTAATATTTTAAAATATCAATGACTAAATT
Found at i:10934629 original size:42 final size:42
Alignment explanation
Indices: 10934562--10934673 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 42
10934552 AAAAAAATTA
*
10934562 ATCAA-GA-TAATATTTAAATTAAAAATATTAATATTTTAAAAT
1 ATCAATGATTAATATTTAAAAT-AAAATATTAATA-TTTAAAAT
* *
10934604 ATTAATGATTAA-A-TTATAAATAAAATATTAATATTTAAATT
1 ATCAATGATTAATATTTA-AAATAAAATATTAATATTTAAAAT
*
10934645 ATCAATTATTAATATTTGAAAATAAAATA
1 ATCAATGATTAATATTT-AAAATAAAATA
10934674 AAATAAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
41 17 0.29
42 20 0.34
43 18 0.31
44 4 0.07
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (42 bp):
ATCAATGATTAATATTTAAAATAAAATATTAATATTTAAAAT
Found at i:10934754 original size:26 final size:26
Alignment explanation
Indices: 10934697--10934787 Score: 73
Period size: 26 Copynumber: 3.5 Consensus size: 26
10934687 GATCATAATA
*
10934697 ATATTTAAA-T-TAAATAAAATATTA
1 ATATTTAAATTATAAATAAAATATTT
*
10934721 ATGA-TTAAATTATAAATGAAATATTT
1 AT-ATTTAAATTATAAATAAAATATTT
* * *
10934747 ATATTTAAATGATTAATTATTAATATTT
1 ATATTTAAATTA-TAAATA-AAATATTT
*
10934775 -TAATTAAATTATA
1 ATATTTAAATTATA
10934788 GATTATTGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
24 7 0.13
25 3 0.06
26 23 0.43
27 13 0.25
28 7 0.13
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (26 bp):
ATATTTAAATTATAAATAAAATATTT
Found at i:10934792 original size:27 final size:27
Alignment explanation
Indices: 10934714--10934802 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
10934704 AATTAAATAA
* * *
10934714 AATATTAATGATTAAATTATAA--ATGA
1 AATATTTATAATTAAATTATAATTAT-T
* *
10934740 AATATTTATATTTAAATGATTAATTATT
1 AATATTTATAATTAAATTA-TAATTATT
10934768 AATATTT-TAATTAAATTATAGATTATT
1 AATATTTATAATTAAATTATA-ATTATT
*
10934795 GATATTTA
1 AATATTTA
10934803 AAAATTTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
26 17 0.34
27 24 0.48
28 7 0.14
29 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (27 bp):
AATATTTATAATTAAATTATAATTATT
Found at i:10937362 original size:18 final size:18
Alignment explanation
Indices: 10937341--10937680 Score: 81
Period size: 18 Copynumber: 19.6 Consensus size: 18
10937331 TAATGTCATA
*
10937341 TATTTTATTTTTATTTAT
1 TATTTTATTTTTATATAT
*
10937359 TATTATAATTTTATATATAT
1 TATT-TTATTTT-TATATAT
* *
10937379 TTTTTTATTTTTATATAA
1 TATTTTATTTTTATATAT
** * * * *
10937397 TATCATACTCTGAAATA-
1 TATTTTATTTTTATATAT
* *
10937414 TATTTTA---ATATCTA-
1 TATTTTATTTTTATATAT
*
10937428 TATTTTATTTTCAGT-TAT
1 TATTTTATTTTTA-TATAT
* * *
10937446 TATTATAATCTTATATATTT
1 TATT-TTAT-TTTTATATAT
10937466 TATTTTATTTTTTATATAT
1 TATTTTA-TTTTTATATAT
*
10937485 T-TTTTA-TATTATATATT
1 TATTTTATTTTTATATA-T
*
10937502 TATTTTA-ATTTAT-T-T
1 TATTTTATTTTTATATAT
* *
10937517 TA-TCTA-TATTATATA-
1 TATTTTATTTTTATATAT
* *
10937532 CATTTTA-ATTT-T-TAT
1 TATTTTATTTTTATATAT
*
10937547 T-TTTTA-TTTTATTTAT
1 TATTTTATTTTTATATAT
*
10937563 T-TTTGATTTTTATATTAT
1 TATTTTATTTTTATA-TAT
10937581 ATATTTTA-TTTTA-AT-T
1 -TATTTTATTTTTATATAT
*
10937597 TGTTTTATCTATATTATATA-
1 TATTTTAT-T-T-TTATATAT
* *
10937617 AATTTTAATTTTTTATATTT
1 TATTTT-A-TTTTTATATAT
10937637 TATTTTA--TTT-TA-AT
1 TATTTTATTTTTATATAT
*
10937651 T-TTTGATTTTTATATTAT
1 TATTTTATTTTTATA-TAT
10937669 ATATTTTATTTT
1 -TATTTTATTTT
10937681 AATTATAATA
Statistics
Matches: 233, Mismatches: 50, Indels: 76
0.65 0.14 0.21
Matches are distributed among these distances:
13 4 0.02
14 29 0.12
15 18 0.08
16 27 0.12
17 19 0.08
18 46 0.20
19 44 0.19
20 43 0.18
21 2 0.01
22 1 0.00
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (18 bp):
TATTTTATTTTTATATAT
Found at i:10937390 original size:20 final size:20
Alignment explanation
Indices: 10937341--10937592 Score: 84
Period size: 18 Copynumber: 12.6 Consensus size: 20
10937331 TAATGTCATA
10937341 TATTTTATTTTTAT-T-TAT
1 TATTTTATTTTTATATATAT
* *
10937359 TATTATAATTTTATATATAT
1 TATTTTATTTTTATATATAT
*
10937379 TTTTTTATTTTTATATAATAT
1 TATTTTATTTTTATAT-ATAT
* *
10937400 CATACTCTGAAATATATTTTA-ATATCT
1 --TA-T-T---TTAT-TTTTATATATAT
* *
10937427 ATATTTTATTTTCA-GT-TAT
1 -TATTTTATTTTTATATATAT
* * * *
10937446 TATTATAATCTTATATATTT
1 TATTTTATTTTTATATATAT
10937466 TATTTTATTTTT-TATATAT
1 TATTTTATTTTTATATATAT
*
10937485 T-TTTTA-TATTATATAT-T
1 TATTTTATTTTTATATATAT
*
10937502 TATTTTAATTTATTTTATCTATAT
1 TATTTT-A--T-TTTTATATATAT
** * * *
10937526 TATATACATTTTAATTTTTAT
1 TAT-TTTATTTTTATATATAT
10937547 T-TTTTA-TTTTAT-T-TAT
1 TATTTTATTTTTATATATAT
*
10937563 T-TTTGATTTTTATAT-TAT
1 TATTTTATTTTTATATATAT
10937581 ATATTTTATTTT
1 -TATTTTATTTT
10937593 AATTTGTTTT
Statistics
Matches: 173, Mismatches: 35, Indels: 50
0.67 0.14 0.19
Matches are distributed among these distances:
16 8 0.05
17 12 0.07
18 44 0.25
19 15 0.09
20 41 0.24
21 17 0.10
22 1 0.01
23 9 0.05
24 7 0.04
25 3 0.02
26 3 0.02
27 3 0.02
28 5 0.03
29 5 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (20 bp):
TATTTTATTTTTATATATAT
Found at i:10937446 original size:87 final size:89
Alignment explanation
Indices: 10937283--10937483 Score: 284
Period size: 87 Copynumber: 2.3 Consensus size: 89
10937273 TTAATATATT
* *
10937283 TATATTTATTATTAATTTTTATATAATATAATCTCTTAAATATATTTTTAATGTCATATATTTTA
1 TATATTTATT-TT-ATTTTTATATAATATAATCTCTGAAATATATTTTTAATATCATATATTTTA
* * *
10937348 TTTTTATTTATTATTATAATTTTATA
64 TTTTCAGTTATTATTATAATCTTATA
*
10937374 TATATTT-TTTTATTTTTATATAATATCATACTCTGAAATATA-TTTTAATATC-TATATTTTAT
1 TATATTTATTTTATTTTTATATAATATAAT-CTCTGAAATATATTTTTAATATCATATATTTTAT
10937436 TTTCAGTTATTATTATAATCTTATA
65 TTTCAGTTATTATTATAATCTTATA
10937461 TAT-TTTATTTTATTTTTTATATA
1 TATATTTATTTTA-TTTTTATATA
10937484 TTTTTTATAT
Statistics
Matches: 101, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
86 3 0.03
87 40 0.40
88 36 0.36
89 13 0.13
90 2 0.02
91 7 0.07
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (89 bp):
TATATTTATTTTATTTTTATATAATATAATCTCTGAAATATATTTTTAATATCATATATTTTATT
TTCAGTTATTATTATAATCTTATA
Found at i:10937468 original size:23 final size:23
Alignment explanation
Indices: 10937442--10937497 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
10937432 TTATTTTCAG
10937442 TTATTATTATAATCTTATATATT
1 TTATTATTATAATCTTATATATT
* *
10937465 TTATT-TTAT-TTTTTATATATT
1 TTATTATTATAATCTTATATATT
*
10937486 TTTTATATTATA
1 TTAT-TATTATA
10937498 TATTTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 13 0.48
22 5 0.19
23 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (23 bp):
TTATTATTATAATCTTATATATT
Found at i:10937471 original size:5 final size:5
Alignment explanation
Indices: 10937461--10937681 Score: 75
Period size: 5 Copynumber: 43.4 Consensus size: 5
10937451 TAATCTTATA
* *
10937461 TATTT TATTT TATTT T-TTAT ATATTT T-TTA TATTA TATATT TATTT
1 TATTT TATTT TATTT TATT-T -TATTT TATTT TATTT TAT-TT TATTT
* * * * * *
10937507 TAATT TATTT TA-TC TATAT TATATA CATTT TAATTT T-TAT T-TTT TATTT
1 TATTT TATTT TATTT TATTT TAT-TT TATTT T-ATTT TATTT TATTT TATTT
* * * *
10937556 TA-TT TATTTT TGATTTT TATAT TA-TA TATTT TATTT TAATT TGTTT
1 TATTT TA-TTT T-A-TTT TATTT TATTT TATTT TATTT TATTT TATTT
* * * * *
10937602 TA-TC TATAT TATATA AATTT TAATTT T-TTA TATTT TATTT TATTT TAATTTT
1 TATTT TATTT TAT-TT TATTT T-ATTT TATTT TATTT TATTT TATTT T-A-TTT
* *
10937654 TGATTTT TATAT TA-TA TATTT TATTT TA
1 T-A-TTT TATTT TATTT TATTT TATTT TA
10937682 ATTATAATAA
Statistics
Matches: 159, Mismatches: 37, Indels: 40
0.67 0.16 0.17
Matches are distributed among these distances:
4 28 0.18
5 87 0.55
6 26 0.16
7 18 0.11
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (5 bp):
TATTT
Found at i:10937572 original size:85 final size:86
Alignment explanation
Indices: 10937459--10937684 Score: 352
Period size: 85 Copynumber: 2.6 Consensus size: 86
10937449 TATAATCTTA
10937459 TATATTTTATTTTATTT-TTTATAT-ATTTTTTATATTATATA-TTTATTTTAATTTATTTTATC
1 TATATTTTATTTTATTTATTT-T-TGA-TTTTTATATTATATATTTTATTTTAATTTATTTTATC
*
10937521 TATATTATATACATTTTAA-TTTT
63 TATATTATATAAATTTTAATTTTT
* *
10937544 TATTTTTTATTTTATTTATTTTTGATTTTTATATTATATATTTTATTTTAATTTGTTTTATCTAT
1 TATATTTTATTTTATTTATTTTTGATTTTTATATTATATATTTTATTTTAATTTATTTTATCTAT
10937609 ATTATATAAATTTTAATTTTT
66 ATTATATAAATTTTAATTTTT
10937630 TATATTTTATTTTATTTTAATTTTTGATTTTTATATTATATATTTTATTTTAATT
1 TATATTTTATTTTA-TTT-ATTTTTGATTTTTATATTATATATTTTATTTTAATT
10937685 ATAATAATAT
Statistics
Matches: 131, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
84 16 0.12
85 56 0.43
86 20 0.15
87 3 0.02
88 36 0.27
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.69
Consensus pattern (86 bp):
TATATTTTATTTTATTTATTTTTGATTTTTATATTATATATTTTATTTTAATTTATTTTATCTAT
ATTATATAAATTTTAATTTTT
Found at i:10937573 original size:24 final size:24
Alignment explanation
Indices: 10937539--10937654 Score: 78
Period size: 26 Copynumber: 4.5 Consensus size: 24
10937529 ATACATTTTA
10937539 ATTTTT-A-TTTTTTATTTTATTT
1 ATTTTTAATTTTTTTATTTTATTT
* *
10937561 ATTTTTGATTTTTATATTATATATTT
1 ATTTTTAATTTTTTTATT-T-TATTT
*
10937587 -TATTTTAATTTGTTTTATCTATATTAT
1 AT-TTTTAATTT-TTTTAT-TTTATT-T
10937614 ATAAATTTTAATTTTTTATATTTTATTT
1 AT---TTTTAATTTTTT-TATTTTATTT
10937642 -TATTTTAATTTTT
1 AT-TTTTAATTTTT
10937655 GATTTTTATA
Statistics
Matches: 77, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
22 6 0.08
23 1 0.01
24 8 0.10
25 14 0.18
26 17 0.22
27 7 0.09
28 3 0.04
29 8 0.10
30 13 0.17
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.72
Consensus pattern (24 bp):
ATTTTTAATTTTTTTATTTTATTT
Found at i:10937592 original size:55 final size:54
Alignment explanation
Indices: 10937414--10937675 Score: 167
Period size: 55 Copynumber: 4.6 Consensus size: 54
10937404 CTCTGAAATA
* * * * * * *
10937414 TATTTTAATATCTATATTTTATTTTCAGTTATTATTATAATCTTATATATTTTATTT
1 TATTTTAATTTTTATTTTTTATATT-ATTTATT-TT-TAATTTTTTATATTTTATTT
* * *
10937471 TATTTT--TTATATATTTTTTATATTATATATTTATTTTAATTTATTT-TATCTATATTAT
1 TATTTTAATT-TTTATTTTTTATATTAT-T-TAT-TTTTAATTT-TTTATAT-TTTATT-T
* *
10937529 ATACATTTTAATTTTTATTTTTTATTTTATTTATTTTTGA-TTTTTATATTATATATTT
1 -T--ATTTTAATTTTTATTTTTTATATTATTTATTTTTAATTTTTTATATT-T-TATTT
* * * *
10937587 TATTTTAATTTGTT-TTATCTATATTATATAAATTTTAATTTTTTATATTTTATTT
1 TATTTTAATTT-TTATTTTTTATATTAT-TTATTTTTAATTTTTTATATTTTATTT
*
10937642 TATTTTAATTTTTGA-TTTTTATATTATATATTTT
1 TATTTTAATTTTT-ATTTTTTATATTATTTATTTT
10937676 ATTTTAATTA
Statistics
Matches: 160, Mismatches: 25, Indels: 43
0.70 0.11 0.19
Matches are distributed among these distances:
54 6 0.04
55 48 0.30
56 31 0.19
57 32 0.20
58 8 0.05
59 10 0.06
60 2 0.01
61 6 0.04
62 15 0.09
63 2 0.01
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (54 bp):
TATTTTAATTTTTATTTTTTATATTATTTATTTTTAATTTTTTATATTTTATTT
Found at i:10944376 original size:13 final size:13
Alignment explanation
Indices: 10944358--10944383 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10944348 AATGTTTTTA
10944358 TAAAAACAAAATC
1 TAAAAACAAAATC
10944371 TAAAAACAAAATC
1 TAAAAACAAAATC
10944384 AAGAAAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAACAAAATC
Found at i:10961899 original size:2 final size:2
Alignment explanation
Indices: 10961892--10961920 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10961882 GACCTGTGCT
10961892 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10961921 TTCATCCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:10965377 original size:6 final size:6
Alignment explanation
Indices: 10965363--10965415 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
10965353 CAAGCCAATG
* * * * *
10965363 AGCAGC AGCAAC AGCAAC AGCAAC AGCAAC AACAAG AGCTAC AACAAC
1 AGCAAC AGCAAC AGCAAC AGCAAC AGCAAC AGCAAC AGCAAC AGCAAC
10965411 AGCAA
1 AGCAA
10965416 TCATCAGAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.51, C:0.30, G:0.17, T:0.02
Consensus pattern (6 bp):
AGCAAC
Found at i:10967429 original size:2 final size:2
Alignment explanation
Indices: 10967422--10967484 Score: 62
Period size: 2 Copynumber: 33.0 Consensus size: 2
10967412 ACATAGCAGG
* * *
10967422 TA TA TA TA TA TA TA TA TA TA TA TA TA CA -A TA -A TA GT- TG CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
10967462 T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
10967485 AATAATTTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
1 4 0.08
2 47 0.90
3 1 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:10969392 original size:23 final size:22
Alignment explanation
Indices: 10969328--10969396 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 22
10969318 ACTTGGTGTC
*
10969328 TTGAAAGTGCAAGAAGGAGAAAT
1 TTGAAAGTGCATGAA-GAGAAAT
*
10969351 TTGAAA--ACATAAGATAGAGAAAT
1 TTGAAAGTGCAT--GA-AGAGAAAT
10969374 TTGAAAGTGCATGAGAGAGAAAT
1 TTGAAAGTGCATGA-AGAGAAAT
10969397 CGTGAGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
21 2 0.05
23 31 0.84
24 1 0.03
25 3 0.08
ACGTcount: A:0.49, C:0.04, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGAAAGTGCATGAAGAGAAAT
Found at i:10979161 original size:37 final size:37
Alignment explanation
Indices: 10979120--10979192 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
10979110 TGCTTCTGCC
10979120 ACTCACATATGTTGATTTACTTCAAGAATGGGTGATT
1 ACTCACATATGTTGATTTACTTCAAGAATGGGTGATT
10979157 ACTCACATATGTTGATTTACTTCAAGAATGGGTGAT
1 ACTCACATATGTTGATTTACTTCAAGAATGGGTGAT
10979193 AGGGAATTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (37 bp):
ACTCACATATGTTGATTTACTTCAAGAATGGGTGATT
Found at i:10979685 original size:112 final size:112
Alignment explanation
Indices: 10979488--10979710 Score: 437
Period size: 112 Copynumber: 2.0 Consensus size: 112
10979478 GAGATGGTAG
10979488 CTACCAAAGTGAGATTTCATTTGCCGAAGAAGTGATAAAAGGTTCCCATTGTGAAAGGACGAAAA
1 CTACCAAAGTGAGATTTCATTTGCCGAAGAAGTGATAAAAGGTTCCCATTGTGAAAGGACGAAAA
10979553 ATCTTGCCAGCGGTGAATTGGAAGGGTCGTCGAGGTCCCTTTCCGAT
66 ATCTTGCCAGCGGTGAATTGGAAGGGTCGTCGAGGTCCCTTTCCGAT
*
10979600 CTACCAAAGTGAGATTTCATTTGCCGAAGAAGTGATATAAGGTTCCCATTGTGAAAGGACGAAAA
1 CTACCAAAGTGAGATTTCATTTGCCGAAGAAGTGATAAAAGGTTCCCATTGTGAAAGGACGAAAA
10979665 ATCTTGCCAGCGGTGAATTGGAAGGGTCGTCGAGGTCCCTTTCCGA
66 ATCTTGCCAGCGGTGAATTGGAAGGGTCGTCGAGGTCCCTTTCCGA
10979711 AGTCAATTAG
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (112 bp):
CTACCAAAGTGAGATTTCATTTGCCGAAGAAGTGATAAAAGGTTCCCATTGTGAAAGGACGAAAA
ATCTTGCCAGCGGTGAATTGGAAGGGTCGTCGAGGTCCCTTTCCGAT
Found at i:10980387 original size:14 final size:14
Alignment explanation
Indices: 10980363--10980408 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
10980353 CACGTAAATT
10980363 TTTATATTTTTTTTA
1 TTTA-ATTTTTTTTA
**
10980378 TTTAATTTTTTAAA
1 TTTAATTTTTTTTA
*
10980392 TTTAATTTTTATTA
1 TTTAATTTTTTTTA
10980406 TTT
1 TTT
10980409 TTTGAGTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTAATTTTTTTTA
Found at i:10980394 original size:23 final size:22
Alignment explanation
Indices: 10980361--10980411 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 22
10980351 ATCACGTAAA
*
10980361 TTTTTATATTT-TTTTTATTTAAT
1 TTTTTAAATTTATTTTTA-TT-AT
10980384 TTTTTAAATTTAATTTTTATTAT
1 TTTTTAAATTT-ATTTTTATTAT
10980407 TTTTT
1 TTTTT
10980412 GAGTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 17 0.68
24 2 0.08
25 6 0.24
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTTTAAATTTATTTTTATTAT
Found at i:10989575 original size:108 final size:108
Alignment explanation
Indices: 10989386--10989601 Score: 423
Period size: 108 Copynumber: 2.0 Consensus size: 108
10989376 ATTTACACCT
10989386 AACCAACTTGTACAATTACTTGCCACTTGACATCTTCTCTTTTGAAGACCTTAAAAGCATAGGAA
1 AACCAACTTGTACAATTACTTGCCACTTGACATCTTCTCTTTTGAAGACCTTAAAAGCATAGGAA
10989451 CTAAATCAGACATAACTAAAAATAGGCATTTTTACCCTACAAA
66 CTAAATCAGACATAACTAAAAATAGGCATTTTTACCCTACAAA
10989494 AACCAACTTGTACAATTACTTGCCACTTGACATCTTCTCTTTTGAAGACCTTAAAAGCATAGGAA
1 AACCAACTTGTACAATTACTTGCCACTTGACATCTTCTCTTTTGAAGACCTTAAAAGCATAGGAA
*
10989559 CTAAATCAGATATAACTAAAAATAGGCATTTTTACCCTACAAA
66 CTAAATCAGACATAACTAAAAATAGGCATTTTTACCCTACAAA
10989602 TGAACTAAAA
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (108 bp):
AACCAACTTGTACAATTACTTGCCACTTGACATCTTCTCTTTTGAAGACCTTAAAAGCATAGGAA
CTAAATCAGACATAACTAAAAATAGGCATTTTTACCCTACAAA
Found at i:10994455 original size:98 final size:98
Alignment explanation
Indices: 10994338--10994528 Score: 256
Period size: 98 Copynumber: 1.9 Consensus size: 98
10994328 ATTTTGAGTA
* * * * * * *
10994338 AATTTAAATAAAAGGTAAATTGGGTAAGAGTTGAATAATTTCATAAGATTTTATATTTATAAATT
1 AATTTAAATAAAAGATAAATTGAGTAAGAGTTAAATAATTTCAAAAGAATGTATAGTTATAAATT
* *
10994403 GTGAAAGTTGTAATTAAATCAACATATTTTGCT
66 GTGAAAATTGTAATTAAACCAACATATTTTGCT
* * * *
10994436 AATTTAAATAAAAGATAAATTGAGTAAGAGTTAAATAGTTTCAAAATAATGTGTAGTTGTAAATT
1 AATTTAAATAAAAGATAAATTGAGTAAGAGTTAAATAATTTCAAAAGAATGTATAGTTATAAATT
*
10994501 GTGAAAATTGTAATTAAACCAATATATT
66 GTGAAAATTGTAATTAAACCAACATATT
10994529 CAGTCATTTT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
98 79 1.00
ACGTcount: A:0.45, C:0.04, G:0.14, T:0.38
Consensus pattern (98 bp):
AATTTAAATAAAAGATAAATTGAGTAAGAGTTAAATAATTTCAAAAGAATGTATAGTTATAAATT
GTGAAAATTGTAATTAAACCAACATATTTTGCT
Found at i:10994743 original size:15 final size:16
Alignment explanation
Indices: 10994697--10994748 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 16
10994687 TTAAGTGAGA
10994697 AAATATTT-ATA-TAT
1 AAATATTTAATATTAT
*
10994711 -ATTATTTAATATTAT
1 AAATATTTAATATTAT
*
10994726 AAATATTTTATATT-T
1 AAATATTTAATATTAT
10994741 AAATATTT
1 AAATATTT
10994749 GACTTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 6 0.19
14 3 0.09
15 12 0.38
16 11 0.34
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
AAATATTTAATATTAT
Found at i:11001455 original size:2 final size:2
Alignment explanation
Indices: 11001448--11001475 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11001438 TAGGAACTTA
11001448 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11001476 TATTGTTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11015612 original size:2 final size:2
Alignment explanation
Indices: 11015607--11015649 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
11015597 CTCTCTCTCT
* * *
11015607 CA CA CA CA CA CA CA CA CA CA CA CA CA CA AA CA CT CA CC CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
11015649 C
1 C
11015650 TGGAACAGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.51, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:11021635 original size:51 final size:51
Alignment explanation
Indices: 11021558--11021654 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
11021548 ATAGCAGATG
*
11021558 CTGTTGCCCTCCTAATATTCCATTTAAGGAATCGATTTCAGAATTTGGATA
1 CTGTTGCCCTCCTAATATTCCATTTAAGGAATAGATTTCAGAATTTGGATA
*
11021609 CTGTTGCCCTCCTAATATTCCGTTTAAGGAATAGATTTCAGAATTT
1 CTGTTGCCCTCCTAATATTCCATTTAAGGAATAGATTTCAGAATTT
11021655 AGTTAAGTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (51 bp):
CTGTTGCCCTCCTAATATTCCATTTAAGGAATAGATTTCAGAATTTGGATA
Found at i:11039519 original size:31 final size:31
Alignment explanation
Indices: 11039449--11039541 Score: 95
Period size: 31 Copynumber: 3.0 Consensus size: 31
11039439 GCTACATCAT
*
11039449 AGAGACTAAATTGAACAAAAATAT-ATAATA-CA
1 AGAGACTAAATTGAAC-AAAAT-TGA-AATATTA
*
11039481 ATA-ACTAAATTGAACAAAATTGAAATATTA
1 AGAGACTAAATTGAACAAAATTGAAATATTA
*
11039511 AGAGACTAAATTGAAAAAAAATTGAAA-ATTA
1 AGAGACTAAATTG-AACAAAATTGAAATATTA
11039542 TGAATATTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
29 5 0.09
30 9 0.17
31 25 0.47
32 14 0.26
ACGTcount: A:0.59, C:0.06, G:0.10, T:0.25
Consensus pattern (31 bp):
AGAGACTAAATTGAACAAAATTGAAATATTA
Found at i:11046280 original size:10 final size:10
Alignment explanation
Indices: 11046252--11046282 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
11046242 AGTCAATCCA
*
11046252 ACACACACAC
1 ACACACACGC
11046262 ACACACACGC
1 ACACACACGC
11046272 ACACACACGC
1 ACACACACGC
11046282 A
1 A
11046283 AAAGGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.45, C:0.48, G:0.06, T:0.00
Consensus pattern (10 bp):
ACACACACGC
Found at i:11051672 original size:15 final size:15
Alignment explanation
Indices: 11051649--11051680 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
11051639 AAGAGTTCTT
*
11051649 GGCATTAGTTCATGC
1 GGCAATAGTTCATGC
11051664 GGCAATAGTTCATGC
1 GGCAATAGTTCATGC
11051679 GG
1 GG
11051681 TTGGTTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (15 bp):
GGCAATAGTTCATGC
Found at i:11064092 original size:29 final size:29
Alignment explanation
Indices: 11064054--11064116 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
11064044 TATATATAGG
*
11064054 AAAAGTTGTACGA-GAACAACTTAAAAGAGA
1 AAAAGTTGTAC-ATGAACAA-GTAAAAGAGA
*
11064084 AAAAG-TGTACATGAACAAGTATAAGAGA
1 AAAAGTTGTACATGAACAAGTAAAAGAGA
11064112 AAAAG
1 AAAAG
11064117 ATAAAAAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 14 0.47
29 11 0.37
30 5 0.17
ACGTcount: A:0.56, C:0.08, G:0.21, T:0.16
Consensus pattern (29 bp):
AAAAGTTGTACATGAACAAGTAAAAGAGA
Found at i:11064368 original size:35 final size:35
Alignment explanation
Indices: 11064300--11064399 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 35
11064290 GAAGTAGTAT
* * * *
11064300 TTCAATTGATCTAATTG-TTTAGTGTGAAATAAAGC
1 TTCACTTGTTCTAATTGTTTTA-AGTGAAGTAAAGC
* *
11064335 TTCACTTGTTCTAGTTGTTTTACA-TGAAGTAAAGT
1 TTCACTTGTTCTAATTGTTTTA-AGTGAAGTAAAGC
*
11064370 TTCACTTGTTTTAATTGTTTTAAGTGAAGT
1 TTCACTTGTTCTAATTGTTTTAAGTGAAGT
11064400 TGTGTTTTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 1 0.02
35 49 0.91
36 4 0.07
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (35 bp):
TTCACTTGTTCTAATTGTTTTAAGTGAAGTAAAGC
Found at i:11071194 original size:30 final size:30
Alignment explanation
Indices: 11071117--11071226 Score: 132
Period size: 30 Copynumber: 3.7 Consensus size: 30
11071107 ATTCGTAAAA
* *
11071117 AAATTAAATAAAGTTTTATATTTTTATTAT
1 AAATTAAATAAATTTTTATATTTTTATTTT
* * *
11071147 -ATTTAATTAATTTTTTATATTTTTATTTT
1 AAATTAAATAAATTTTTATATTTTTATTTT
11071176 AAATTAAATAAATTTTTATATTTTTATTTT
1 AAATTAAATAAATTTTTATATTTTTATTTT
* * *
11071206 GAATCAAGTAAAGTTTTTATA
1 AAATTAAATAAA-TTTTTATA
11071227 ATTAATAATT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
29 24 0.36
30 35 0.52
31 8 0.12
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (30 bp):
AAATTAAATAAATTTTTATATTTTTATTTT
Found at i:11071309 original size:14 final size:14
Alignment explanation
Indices: 11071290--11071341 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
11071280 GGTGTGACAT
11071290 ATTAATATATCATA
1 ATTAATATATCATA
* *
11071304 ATTAATTATTTGAGATA
1 ATTAA-TATAT--CATA
11071321 TATTAATATATCATA
1 -ATTAATATATCATA
11071336 ATTAAT
1 ATTAAT
11071342 GATAATATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 11 0.37
15 7 0.23
17 7 0.23
18 5 0.17
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (14 bp):
ATTAATATATCATA
Found at i:11071992 original size:12 final size:12
Alignment explanation
Indices: 11071975--11072000 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11071965 TGACAATTAA
11071975 AATTTTAGAGAG
1 AATTTTAGAGAG
11071987 AATTTTAGAGAG
1 AATTTTAGAGAG
11071999 AA
1 AA
11072001 AGGGATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (12 bp):
AATTTTAGAGAG
Found at i:11077375 original size:22 final size:24
Alignment explanation
Indices: 11077322--11077375 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
11077312 TGATCAAACT
11077322 CTCTTTGA-GGATGAACAAAAGAA
1 CTCTTTGATGGATGAACAAAAGAA
*
11077345 C-CGTATGATGGA-G-ACAAAAGAA
1 CTC-TTTGATGGATGAACAAAAGAA
11077367 CTCTTTGAT
1 CTCTTTGAT
11077376 TGGGTCTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
22 16 0.62
23 7 0.27
24 3 0.12
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (24 bp):
CTCTTTGATGGATGAACAAAAGAA
Found at i:11080642 original size:10 final size:9
Alignment explanation
Indices: 11080622--11080663 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
11080612 AACATATGAG
11080622 TAAATAATA
1 TAAATAATA
11080631 TAAATAAATA
1 TAAAT-AATA
11080641 TAAATAA-A
1 TAAATAATA
*
11080649 AATAATAATA
1 TA-AATAATA
11080659 TAAAT
1 TAAAT
11080664 TACAAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 2 0.07
9 15 0.54
10 11 0.39
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
TAAATAATA
Found at i:11081587 original size:20 final size:21
Alignment explanation
Indices: 11081555--11081612 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 21
11081545 ACACCAACCC
11081555 AAAAGAAGAAAGAAAACAGAA
1 AAAAGAAGAAAGAAAACAGAA
* *
11081576 AAAAGAAG-AAGAAAAAAGGA
1 AAAAGAAGAAAGAAAACAGAA
11081596 AAAA-AAGAAAGAAAACA
1 AAAAGAAGAAAGAAAACA
11081613 AAACCCTAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.09
20 22 0.67
21 8 0.24
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAAGAAGAAAGAAAACAGAA
Found at i:11100135 original size:2 final size:2
Alignment explanation
Indices: 11100128--11100158 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11100118 ACTGAAAAGA
11100128 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
11100159 AATGCCCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11105127 original size:33 final size:33
Alignment explanation
Indices: 11105082--11105145 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
11105072 TACATATTGT
*
11105082 TAATGTGACATATTGATATATCATAATTGATAA
1 TAATATGACATATTGATATATCATAATTGATAA
11105115 TAATATGACATATTGATATATCATAATTGAT
1 TAATATGACATATTGATATATCATAATTGAT
11105146 GATGACGTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (33 bp):
TAATATGACATATTGATATATCATAATTGATAA
Found at i:11105157 original size:33 final size:33
Alignment explanation
Indices: 11105086--11105161 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
11105076 TATTGTTAAT
*
11105086 GTGACATATTGATATATCATAATTGATAATAAT
1 GTGACATATTGATATATCATAATTGATAATAAC
* * *
11105119 ATGACATATTGATATATCATAATTGATGATGAC
1 GTGACATATTGATATATCATAATTGATAATAAC
11105152 GTGACATATT
1 GTGACATATT
11105162 AATTTGACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (33 bp):
GTGACATATTGATATATCATAATTGATAATAAC
Found at i:11105364 original size:34 final size:36
Alignment explanation
Indices: 11105326--11105404 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 36
11105316 ATAAACTTAA
*
11105326 TTTAATATAATAAAAAATTATTT-TAT-TTAAATTT
1 TTTAATATAATAAAAAATTATTTAAATATTAAATTT
* * * *
11105360 TTTAAT-TATTTAAATATTATTTAAATATTATATTT
1 TTTAATATAATAAAAAATTATTTAAATATTAAATTT
11105395 TTTAATATAA
1 TTTAATATAA
11105405 AAATTATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
33 13 0.36
34 8 0.22
35 13 0.36
36 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (36 bp):
TTTAATATAATAAAAAATTATTTAAATATTAAATTT
Found at i:11105378 original size:11 final size:11
Alignment explanation
Indices: 11105364--11105390 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11105354 AAATTTTTTA
11105364 ATTATTTAAAT
1 ATTATTTAAAT
11105375 ATTATTTAAAT
1 ATTATTTAAAT
11105386 ATTAT
1 ATTAT
11105391 ATTTTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTATTTAAAT
Found at i:11119560 original size:24 final size:26
Alignment explanation
Indices: 11119510--11119572 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 26
11119500 TTCGACTTAA
11119510 AATAAAAATATCAAAACTTATTGAATTT
1 AATAAAAATA--AAAACTTATTGAATTT
*
11119538 AATAAAAATAAAAA-TT-TTTAATTT
1 AATAAAAATAAAAACTTATTGAATTT
**
11119562 TTTAAAAATAA
1 AATAAAAATAA
11119573 TTTATATCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 16 0.50
25 2 0.06
26 4 0.12
28 10 0.31
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (26 bp):
AATAAAAATAAAAACTTATTGAATTT
Found at i:11121859 original size:2 final size:2
Alignment explanation
Indices: 11121852--11121881 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
11121842 ACCCAATGAC
*
11121852 GA GA GA GA GA TA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
11121882 AATTGATGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (2 bp):
GA
Found at i:11129199 original size:3 final size:3
Alignment explanation
Indices: 11129191--11129218 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
11129181 AAAAATGTTA
11129191 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
11129219 GCAAAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:11136726 original size:15 final size:16
Alignment explanation
Indices: 11136702--11136738 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
11136692 TCACACGCCA
11136702 TATT-AATTTAATAAT
1 TATTAAATTTAATAAT
*
11136717 T-TTAAATTTATTAAT
1 TATTAAATTTAATAAT
11136732 TATTAAA
1 TATTAAA
11136739 AAAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 2 0.11
15 12 0.63
16 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTAAATTTAATAAT
Found at i:11145060 original size:5 final size:5
Alignment explanation
Indices: 11145040--11145077 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
11145030 TTACATTACC
11145040 TATA- TATAT ATATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TAT
11145078 GTATCGACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.12
5 23 0.72
6 5 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:11155452 original size:21 final size:23
Alignment explanation
Indices: 11155426--11155473 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
11155416 AATGATGGTG
*
11155426 ATGTGACATAATAAT-AT-AATT
1 ATGTGACATAAAAATAATAAATT
*
11155447 ATGTGATATAAAAATAATAAATT
1 ATGTGACATAAAAATAATAAATT
11155470 ATGT
1 ATGT
11155474 TTTGATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 13 0.57
22 2 0.09
23 8 0.35
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (23 bp):
ATGTGACATAAAAATAATAAATT
Found at i:11157530 original size:2 final size:2
Alignment explanation
Indices: 11157515--11157549 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
11157505 ATATTGATGC
* *
11157515 TA TA TA TG TC TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11157550 TCTCAAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11158890 original size:2 final size:2
Alignment explanation
Indices: 11158883--11158910 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11158873 CAAGAGATAG
11158883 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11158911 TTTGGCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11166178 original size:2 final size:2
Alignment explanation
Indices: 11166165--11166197 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
11166155 ACCTAATAAG
*
11166165 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11166198 AATTGCTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:11182945 original size:6 final size:6
Alignment explanation
Indices: 11182936--11182964 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
11182926 CTTCTCCCTC
11182936 TCTCTT TCTCTT TCTCTT TCTCTT TCTCT
1 TCTCTT TCTCTT TCTCTT TCTCTT TCTCT
11182965 CTGTTGTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (6 bp):
TCTCTT
Found at i:11196898 original size:2 final size:2
Alignment explanation
Indices: 11196891--11196917 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11196881 AGCTTCACTC
11196891 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
11196918 AATCAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:11197244 original size:2 final size:2
Alignment explanation
Indices: 11197237--11197273 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
11197227 AAGCAAAACT
*
11197237 TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
11197274 ATATATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:11197278 original size:2 final size:2
Alignment explanation
Indices: 11197273--11197310 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
11197263 TCTCTCTCTC
*
11197273 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11197311 ATTTAGGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:11218214 original size:25 final size:25
Alignment explanation
Indices: 11218186--11218238 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
11218176 ACAGATTTTG
*
11218186 AAACAGAGATGACCAACAGCAAGGA
1 AAACAAAGATGACCAACAGCAAGGA
*
11218211 AAACAAAGATGACCAACAGTAAGGA
1 AAACAAAGATGACCAACAGCAAGGA
11218236 AAA
1 AAA
11218239 TGATAGATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.57, C:0.17, G:0.21, T:0.06
Consensus pattern (25 bp):
AAACAAAGATGACCAACAGCAAGGA
Found at i:11246920 original size:11 final size:11
Alignment explanation
Indices: 11246899--11246929 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
11246889 AAAATATTTT
11246899 TAAATTATTAAA
1 TAAATT-TTAAA
11246911 TAAATTTTAAA
1 TAAATTTTAAA
11246922 TAAATTTT
1 TAAATTTT
11246930 TTATTATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAATTTTAAA
Found at i:11263264 original size:75 final size:75
Alignment explanation
Indices: 11263136--11263372 Score: 395
Period size: 75 Copynumber: 3.2 Consensus size: 75
11263126 TTCCGACCGG
* * * *
11263136 TGAAACTGCGAATACCAGTAACCGAGAGAAAAATCCTGTCCCGCCC-ACAGCACGAGTCTTAGCT
1 TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTGTCCC-CCCGACAGCACGAGTATTAGCT
*
11263200 AGTGCCCCTGC
65 ACTGCCCCTGC
* *
11263211 TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTCTCCCCCCGACAGCACGAGTATTAGCCA
1 TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTGTCCCCCCGACAGCACGAGTATTAGCTA
11263276 CTGCCCCTGC
66 CTGCCCCTGC
11263286 TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTGTCCCCCCGACAGCACGAGTATTAGCTA
1 TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTGTCCCCCCGACAGCACGAGTATTAGCTA
11263351 CTGCCCCTGC
66 CTGCCCCTGC
11263361 TGAAGCTGCGAA
1 TGAAGCTGCGAA
11263373 CCGCAGTAAC
Statistics
Matches: 152, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
74 3 0.02
75 149 0.98
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (75 bp):
TGAAGCTGCGAATACTAGTAACCGAGAGAGAAATCCTGTCCCCCCGACAGCACGAGTATTAGCTA
CTGCCCCTGC
Found at i:11285318 original size:15 final size:15
Alignment explanation
Indices: 11285298--11285326 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11285288 CTGTTATATG
11285298 AATTTTATTTTTAAT
1 AATTTTATTTTTAAT
11285313 AATTTTATTTTTAA
1 AATTTTATTTTTAA
11285327 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
AATTTTATTTTTAAT
Found at i:11285920 original size:14 final size:13
Alignment explanation
Indices: 11285903--11285944 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
11285893 TATAAATTTT
11285903 TTAATTATTAATAA
1 TTAATT-TTAATAA
*
11285917 TTAAATTTAATATA
1 TTAATTTTAATA-A
11285931 TTAATTTTAA-AA
1 TTAATTTTAATAA
11285943 TT
1 TT
11285945 TTATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 3 0.12
13 7 0.28
14 15 0.60
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAATTTTAATAA
Found at i:11286511 original size:18 final size:19
Alignment explanation
Indices: 11286477--11286512 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
11286467 TTTGCAATTT
*
11286477 TTAACTATATTTTTAAATC
1 TTAACTATATATTTAAATC
11286496 TTAACT-TATATTTAAAT
1 TTAACTATATATTTAAAT
11286513 AAATTCTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAACTATATATTTAAATC
Found at i:11294779 original size:18 final size:18
Alignment explanation
Indices: 11294750--11294865 Score: 85
Period size: 18 Copynumber: 6.4 Consensus size: 18
11294740 TTTCTAGCAT
* *
11294750 TATAAGTATTTGAATGAA
1 TATAATTATTTGAATAAA
*
11294768 TTTAATTATTTGAATAAA
1 TATAATTATTTGAATAAA
* *
11294786 TATAATT-CTTGAA-CAA
1 TATAATTATTTGAATAAA
* *
11294802 TCATAATTGTTTGAACAAA
1 T-ATAATTATTTGAATAAA
*
11294821 CTTATAATTATTTGAACAAA
1 --TATAATTATTTGAATAAA
*
11294841 CT-TAATTATTTAAATAAA
1 -TATAATTATTTGAATAAA
*
11294859 CATAATT
1 TATAATT
11294866 CTTAAATAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.04
17 11 0.14
18 45 0.57
19 3 0.04
20 16 0.20
21 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (18 bp):
TATAATTATTTGAATAAA
Found at i:11294836 original size:73 final size:73
Alignment explanation
Indices: 11294749--11294885 Score: 193
Period size: 73 Copynumber: 1.9 Consensus size: 73
11294739 GTTTCTAGCA
** * * * *
11294749 TTATAAGTATTTGAATGAATTTAATTATTTGAATAAATATAATTCTTGAACAATCATAATTGTTT
1 TTATAAGTATTTGAACAAACTTAATTATTTAAATAAACATAATTCTTAAACAATCATAATTGTTT
11294814 GAACAAAC
66 GAACAAAC
* * *
11294822 TTATAATTATTTGAACAAACTTAATTATTTAAATAAACATAATTCTTAAATAATTATAATTGTT
1 TTATAAGTATTTGAACAAACTTAATTATTTAAATAAACATAATTCTTAAACAATCATAATTGTT
11294886 CAAAAGAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 55 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.43
Consensus pattern (73 bp):
TTATAAGTATTTGAACAAACTTAATTATTTAAATAAACATAATTCTTAAACAATCATAATTGTTT
GAACAAAC
Found at i:11299041 original size:15 final size:16
Alignment explanation
Indices: 11299016--11299045 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11299006 AGTGGGGAGC
11299016 GAAAGAGTGAGAAAGA
1 GAAAGAGTGAGAAAGA
11299032 GAAAGA-TGAGAAAG
1 GAAAGAGTGAGAAAG
11299046 GTGGGGTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (16 bp):
GAAAGAGTGAGAAAGA
Found at i:11309125 original size:2 final size:2
Alignment explanation
Indices: 11309118--11309143 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11309108 AATTTTTCAA
11309118 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11309144 GACACCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11321727 original size:28 final size:29
Alignment explanation
Indices: 11321696--11321751 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
11321686 TGCTGTTATC
*
11321696 TTATATGTT-GGTAATCCTTGCTAGTTTT
1 TTATATGTTAGCTAATCCTTGCTAGTTTT
* *
11321724 TTATTTGTTAAGCTAATCCTTTCTAGTT
1 TTATATGTT-AGCTAATCCTTGCTAGTT
11321752 CCTATTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
30 15 0.65
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.54
Consensus pattern (29 bp):
TTATATGTTAGCTAATCCTTGCTAGTTTT
Found at i:11326715 original size:2 final size:2
Alignment explanation
Indices: 11326710--11326737 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11326700 GCATATATAG
11326710 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
11326738 TCTTTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Done.