genome.fa.s30.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397283.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_31.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1333793

Tables:   1   2   3   

This is table  3  of  3  ( 270 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204368--1204414	15	3.4	14	75	13	53	29	0	0	70	0.88
1207774--1207815	22	1.9	22	100	0	84	23	14	33	28	1.94
1225467--1225524	28	2.1	28	87	12	86	58	3	3	34	1.32
1237145--1237179	17	2.1	17	94	0	61	57	5	25	11	1.56
1240493--1240545	21	2.8	19	84	15	74	81	1	11	5	0.94
1240479--1240545	17	3.7	17	81	14	80	77	1	14	5	1.03
1240504--1240544	21	2.0	21	100	0	82	82	2	9	4	0.89
1265958--1266057	42	2.4	43	79	9	102	57	2	4	37	1.29
1266241--1266300	15	4.3	15	69	16	56	60	1	0	38	1.07
1266237--1266327	41	2.2	42	84	5	114	56	3	0	40	1.16
1266297--1266355	27	2.1	28	84	3	75	52	5	0	42	1.23
1266307--1266360	26	2.0	27	82	10	67	55	5	0	38	1.23
1266574--1266606	17	1.9	17	93	0	57	48	24	3	24	1.65
1279603--1279627	9	2.8	9	100	0	50	92	0	8	0	0.40
1284932--1285156	27	8.4	27	74	7	165	10	21	37	30	1.87
1285025--1285126	24	4.0	24	75	20	91	9	22	37	30	1.87
1285025--1285096	33	2.2	33	85	5	92	11	23	37	27	1.89
1285059--1285158	3	33.3	3	71	11	62	8	24	38	30	1.84
1285062--1285122	21	2.9	21	87	4	88	6	24	37	31	1.81
1284938--1285239	81	3.7	81	75	13	216	11	20	38	30	1.88
1285035--1285101	33	2.0	33	94	0	116	7	25	37	29	1.83
1285122--1285185	18	3.7	18	69	12	62	10	20	40	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1285110--1285186	33	2.3	33	97	0	145	10	22	38	28	1.87
1285149--1285239	24	3.8	24	76	5	85	12	19	38	29	1.88
1285110--1285200	33	2.8	33	88	3	94	13	19	40	26	1.88
1285227--1285330	30	3.5	30	86	0	145	7	21	38	32	1.82
1285322--1285367	24	1.9	24	82	8	58	6	19	34	39	1.78
1293523--1293594	36	2.0	36	94	0	126	37	19	13	29	1.90
1295524--1295559	3	12.0	3	93	0	63	2	0	30	66	1.06
1309088--1309112	12	2.1	12	100	0	50	0	76	0	24	0.80

Tables:   1   2   3

The End!