Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3474.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6478
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.25

Warning! 2320 characters in sequence are not A, C, G, or T


Found at i:3616 original size:172 final size:173

Alignment explanation


    Indices: 3264--3633  Score: 494
    Period size: 172  Copynumber: 2.1  Consensus size: 173

       3254 TATTTTAACT

                      *                                        *           * 
       3264 CATGCCTTCGGAAGCCTTATTACTCGCTTTAAATAGTTTTTTTTAATCTCATAATTAGTTTTAGG
          1 CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTTTTTAATCTCAGAATTAGTTTTAAG

            *                                        *      *                
       3329 TTGAACTTTTTTATATTTATTATTAAAACAGATTATAATTGTATGTTTTCCTCAAGAAATGTGAA
         66 ATGAACTTTTTTATATTTATTATTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAATGTGAA

                          *           *     ********** 
       3394 GAAAACAATATCCATTAGCAAGAAAAGTCCATNNNNNNNNNNC
        131 GAAAACAATATCCACTAGCAAGAAAAATCCATATTGTACTCAC

                                  *                                          
       3437 CATGCCTTCGAAAGCCTTATTATTCGCTTTAAATAGTTTTTTTT-ATCTCAGAATTAGTTTTAAG
          1 CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTTTTTAATCTCAGAATTAGTTTTAAG

                              *  *                                *          
       3501 ATGAACTTTTTTATATTTGTTGTTAAAACAGATTATAATTGAATGTTTGCCTCAGGAAATGTGAA
         66 ATGAACTTTTTTATATTTATTATTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAATGTGAA

                                                        
       3566 GAAAA-AGATATCCACTAGCAAGAAAAATCCAT-TTGTACTCAC
        131 GAAAACA-ATATCCACTAGCAAGAAAAATCCATATTGTACTCAC

                          *           
       3608 CTATGCCTTCGAAAACCTTATTACTC
          1 C-ATGCCTTCGAAAGCCTTATTACTC

       3634 ANNNNNNNNN


Statistics
Matches: 172,  Mismatches: 23, Indels: 5
        0.86            0.12        0.03

Matches are distributed among these distances:
 171    3  0.02
 172  127  0.74
 173   42  0.24

ACGTcount: A:0.32, C:0.15, G:0.12, T:0.38


Consensus pattern (173 bp):   
CATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGTTTTTTTTAATCTCAGAATTAGTTTTAAG
ATGAACTTTTTTATATTTATTATTAAAACAGATTATAATTGAATGTTTGCCTCAAGAAATGTGAA
GAAAACAATATCCACTAGCAAGAAAAATCCATATTGTACTCAC
Done.