Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3483.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3794
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.31
Warning! 794 characters in sequence are not A, C, G, or T
Found at i:322 original size:172 final size:172
Alignment explanation
Indices: 107--1006 Score: 532
Period size: 173 Copynumber: 5.2 Consensus size: 172
97 CACCTATTAC
* * *
107 TTCAAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATCTCAAAATCAATTTTAAGTTCAATTT
1 TTCAAAAGCCTTATTGCTCATTTTAAATGATTTTATTATCTCAAAATC-ATTTTAAGTTCAATTT
* * ** *
172 TTTTTA-ATTTTTTGACTAAAACAAATTATAATTGAATGTTTACATTTAGAAACATGAAGTAAAA
65 TTTTTACATTTTTTGACTAAAACAAACTATAATTGAATGTCTACATCAAGAAACATGAAGAAAAA
* * * *
236 GGTATTCATT-ACAAAGAAAAATCTATTTATAGTCTT-TCATTCC
130 AGCATTCATTGA-AAAGAAAAATCCATTTATAGT-TTCTCATTCA
* * * * **
279 TTGAAAAGCGTTATTGGTCATTTTAAATGATTTTATTATCTCAAAATTGATTTTCTGTTCAATTA
1 TTCAAAAGCCTTATTGCTCATTTTAAATGATTTTATTATCTCAAAA-TCATTTTAAGTTCAATT-
* ** * * *
344 TGTTTTACA-TTTTTGGTTAAGACAAACTATAATTGAATGTCTACCTCAAGAAACGTGAAGAAAA
64 TTTTTTACATTTTTTGACTAAAACAAACTATAATTGAATGTCTACATCAAGAAACATGAAGAAAA
* * ** *
408 AAGCATTCTTTGAAGAGAAATGTCCATTTATAGTTTCTTATTCA
129 AAGCATTCATTGAAAAGAAAAATCCATTTATAGTTTCTCATTCA
* * * * * **
452 TTCAGAAGCCTTATTACTGATTGTAAATAATTTTATTATCTCAAAATTCATTTTAAGTTCTGTTT
1 TTCAAAAGCCTTATTGCTCATTTTAAATGATTTTATTATCTCAAAA-TCATTTTAAGTTCAATTT
* * * * * * **
517 TTTTAACATTTTTGGTC-AAAACATACTATAATTGAATGTCTATC-CCGAGAAACACAAAGAAAA
65 TTTTTACATTTTTTGACTAAAACAAACTATAATTGAATGTCTA-CATCAAGAAACATGAAG--AA
* ** *
580 AAAAGCATTCATTGATAAA-AGAAGCCCATTTATAGTCTTCT-ATTCC
127 AAAAGCATTCATTGA-AAAGAAAAATCCATTTATAGT-TTCTCATTCA
** ** * ** * * *
626 TTCAAAAGCCTTATTAG-TCGCTTTAAATGGCTGTACAATCTC---ATAATTTTAGGTTTAA-TT
1 TTCAAAAGCCTTATT-GCTCATTTTAAATGATTTTATTATCTCAAAATCATTTTAAGTTCAATTT
* ** * * * * * *
686 TTTTTACA-TTATTGGTTAAAAC-AGCTTATAATTGAATGTCTACCTCGAGAAACGTAAAGAGAA
65 TTTTTACATTTTTTGACTAAAACAAAC-TATAATTGAATGTCTACATCAAGAAACATGAAGAAAA
** * ** * * ** *
749 CGGCATTTATTGGCAAGAAAAGTCCATTTATGGTCAC-CTATTCC
129 AAGCATTCATTGAAAAGAAAAATCCATTTATAGTTTCTC-ATTCA
* * * *
793 TTCAAAAGCCTTATTACTCACTTTAAATTG-TTTTATAATCTCAAATTTCATTTTAAGTTCAA-T
1 TTCAAAAGCCTTATTGCTCATTTTAAA-TGATTTTATTATCTCAAA-ATCATTTTAAGTTCAATT
* ** * * * * * ** *
856 TTGTTTACA-TTTTTGGTTAAAACAGATTACAATTGAATATCTACCTCGTGACACAT-ATAGAAA
64 TTTTTTACATTTTTTGACTAAAACAAACTATAATTGAATGTCTACATCAAGAAACATGA-AGAAA
* * * ** *
919 AAGGCATTTATT-AACAAG-AAAAGCTCATTTATAGCCATC-CATTCC
128 AAAGCATTCATTGAA-AAGAAAAATC-CATTTATAG-TTTCTCATTCA
* * * * *
964 TTCTAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCA
1 TTCAAAAGCCTTATTGCTCATTTTAAATGATTTTATTATCTCA
1007 TAATNNNNNN
Statistics
Matches: 570, Mismatches: 128, Indels: 61
0.75 0.17 0.08
Matches are distributed among these distances:
166 3 0.01
167 64 0.11
168 8 0.01
169 42 0.07
170 17 0.03
171 129 0.23
172 97 0.17
173 139 0.24
174 65 0.11
175 6 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (172 bp):
TTCAAAAGCCTTATTGCTCATTTTAAATGATTTTATTATCTCAAAATCATTTTAAGTTCAATTTT
TTTTACATTTTTTGACTAAAACAAACTATAATTGAATGTCTACATCAAGAAACATGAAGAAAAAA
GCATTCATTGAAAAGAAAAATCCATTTATAGTTTCTCATTCA
Found at i:801 original size:167 final size:166
Alignment explanation
Indices: 88--1010 Score: 604
Period size: 171 Copynumber: 5.4 Consensus size: 166
78 ACAAAAGTCT
* * *
88 ATTTATAATCACCTATTACTTCAAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATCTCAAAA
1 ATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTC---A
* * ** * * * * *
153 TCAATTTTAAGTTCAATTTTTTTTA-ATTTTTTGACTAAAACAAATTATAATTGAATGTTTACAT
63 T-AATTTTAAGTTCAA-TTTGTTTACA-TTATTGGTTAAAACAGATTACAATTGAATATCTACCT
** * * * * * *
217 TTAGAAACATGAAGTAAAAGGTATTCATT-ACAAAGAAAAATCT
125 CGAGAAACATAAAGAAAAAGGCATTTATTAAC-AAG-AAAAGCC
** * * ** * * *
260 ATTTATAGTC-TTTCATTCCTTGAAAAGCGTTATTGGTCATTTTAAATGATTTTATTATCTCAAA
1 ATTTATAGTCACCT-ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTC---
* ** * * * * * *
324 ATTGATTTTCTGTTCAATTATGTTTTACATTTTTGGTTAAGACAAACTATAATTGAATGTCTACC
62 A-TAATTTTAAGTTCAATT-TG-TTTACATTATTGGTTAAAACAGATTACAATTGAATATCTACC
* * * * * *
389 TCAAGAAACGTGAAGAAAAAAGCATTCT-TTGAA-GAGAAATGTCC
124 TCGAGAAACATAAAGAAAAAGGCATT-TATT-AACAAGAAAAG-CC
** * * * * ** *
433 ATTTATAGTTTCTTATTCATTCAGAAGCCTTATTACTGA-TTGTAAATAATTTTATTATCTCAAA
1 ATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTT-TAAATGGTTTTATAATCTC---
* ** * * * * * * *
497 ATTCATTTTAAGTTCTGTTTTTTTAACATTTTTGGTCAAAACATACTATAATTGAATGTCTATCC
62 A-TAATTTTAAGTTCAATTTGTTT-ACATTATTGGTTAAAACAGATTACAATTGAATATCTA-CC
* * * * *
562 -CGAGAAACACAAAGAAAAAAAAGCATTCATTGATAA-AAGAAGCCC
124 TCGAGAAACATAAAG--AAAAAGGCATTTATTAACAAGAA-AAG-CC
** * * * * *
607 ATTTATAGTCTTCTATTCCTTCAAAAGCCTTATTAGTCGCTTTAAATGGCTGTACAATCTCATAA
1 ATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * * * * *
672 TTTTAGGTTTAATTTTTTTACATTATTGGTTAAAACAGCTTATAATTGAATGTCTACCTCGAGAA
66 TTTTAAGTTCAATTTGTTTACATTATTGGTTAAAACAGATTACAATTGAATATCTACCTCGAGAA
* * * **
737 ACGTAAAGAGAACGGCATTTATTGGCAAGAAAAGTCC
131 ACATAAAGAAAAAGGCATTTATTAACAAGAAAAG-CC
* *
774 ATTTATGGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCAAAT
1 ATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTC--A-
* *
839 TTCATTTTAAGTTCAATTTGTTTACATTTTTGGTTAAAACAGATTACAATTGAATATCTACCTCG
63 -TAATTTTAAGTTCAATTTGTTTACATTATTGGTTAAAACAGATTACAATTGAATATCTACCTCG
* * *
904 TGACACATATAGAAAAAGGCATTTATTAACAAGAAAAGCTC
127 AGAAACATAAAGAAAAAGGCATTTATTAACAAGAAAAGC-C
* *
945 ATTTATAGCCATCC-ATTCCTTCTAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATA
1 ATTTATAGTCA-CCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATA
1009 AT
65 AT
1011 NNNNNNNNNN
Statistics
Matches: 602, Mismatches: 122, Indels: 59
0.77 0.16 0.08
Matches are distributed among these distances:
167 74 0.12
168 4 0.01
169 46 0.08
170 18 0.03
171 148 0.25
172 117 0.19
173 127 0.21
174 65 0.11
175 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (166 bp):
ATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
TTTTAAGTTCAATTTGTTTACATTATTGGTTAAAACAGATTACAATTGAATATCTACCTCGAGAA
ACATAAAGAAAAAGGCATTTATTAACAAGAAAAGCC
Found at i:804 original size:341 final size:338
Alignment explanation
Indices: 24--1010 Score: 823
Period size: 341 Copynumber: 2.9 Consensus size: 338
14 ACCAAAAGAG
* * * * * * *
24 ACTATAATTGATTGTCTATCTCGAGAAATGTAAAGAAAAATGAATTCATTTGGAACA-AAA-GTC
1 ACTATAATTGAATGTCTACCTCAAGAAACGTAAAGAAAAAAGCATTC-TTT-GAAGAGAAATGTC
* * * **
87 TATTTATAATCACCTATT-ACTTCAAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATCTCAA
64 CATTTATAGTCACCTATTCA-TTCAAAAGCCTTATTACTCACTTTAAATAATTTTATAATCTCAA
* * * * * * * *
151 AA-TCAATTTTAAGTTCAATTTTTTTTA-ATTTTTTGACTAAAACAAATTATAATTGAATGTTTA
128 AATTC-ATTTTAAGTTCAA-TTTGTTTACATTTTTGGTC-AAAACAGACTACAATTGAATATCTA
* ** * * * * * ** * * * *
214 CATTTAGAAAC-ATGAAGTAAAAGGTATTCATT-ACAAAGAAAAATCTATTTATAGTCTTTCATT
190 CCTCGAGACACAAAGAA-AAAAAAGCATTCATTAAC-AAGAAAAGCCCATTTATAGCCATCCATT
* * ** * ** * ** * ** *
277 CCTTGAAAAGCGTTATTGGTCATTTTAAATGATTTTATTATCTCAAAATTGATTTTCTGTTCAAT
253 CCTTCAAAAGCCTTATTACTCACTTTAAATGGCTGTACAATCTC---A-TAATTTTAGGTTTAAT
* *
342 TATGTTTTACATTTTTGGTTAAGACAA
314 T-T-TTTTACATTATTGGTTAAAACAA
*
369 ACTATAATTGAATGTCTACCTCAAGAAACGTGAAGAAAAAAGCATTCTTTGAAGAGAAATGTCCA
1 ACTATAATTGAATGTCTACCTCAAGAAACGTAAAGAAAAAAGCATTCTTTGAAGAGAAATGTCCA
** * * * *
434 TTTATAGTTTCTTATTCATTCAGAAGCCTTATTACTGA-TTGTAAATAATTTTATTATCTCAAAA
66 TTTATAGTCACCTATTCATTCAAAAGCCTTATTACTCACTT-TAAATAATTTTATAATCTCAAAA
** * * * *
498 TTCATTTTAAGTTCTGTTTTTTTAACATTTTTGGTCAAAACATACTATAATTGAATGTCTATCC-
130 TTCATTTTAAGTTCAATTTGTTT-ACATTTTTGGTCAAAACAGACTACAATTGAATATCTA-CCT
* * * * *
562 CGAGAAACACAAAGAAAAAAAAGCATTCATTGATAA-AAGAAGCCCATTTATAGTCTTCTATTCC
193 CGAG--ACACAAAGAAAAAAAAGCATTCATTAACAAGAA-AAGCCCATTTATAGCCATCCATTCC
* *
626 TTCAAAAGCCTTATTAGTCGCTTTAAATGGCTGTACAATCTCATAATTTTAGGTTTAATTTTTTT
255 TTCAAAAGCCTTATTACTCACTTTAAATGGCTGTACAATCTCATAATTTTAGGTTTAATTTTTTT
691 ACATTATTGGTTAAAAC-A
320 ACATTATTGGTTAAAACAA
* * * **
709 GCTTATAATTGAATGTCTACCTCGAGAAACGTAAAGAGAACGGCATT-TATTGGCAAGA-AAA-G
1 AC-TATAATTGAATGTCTACCTCAAGAAACGTAAAGAAAAAAGCATTCT-TT-G-AAGAGAAATG
* * **
771 TCCATTTATGGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCA
62 TCCATTTATAGTCACCTATTCATTCAAAAGCCTTATTACTCACTTTAAATAATTTTATAATCTCA
* * *
836 AATTTCATTTTAAGTTCAATTTGTTTACATTTTTGGTTAAAACAGATTACAATTGAATATCTACC
127 AAATTCATTTTAAGTTCAATTTGTTTACATTTTTGGTCAAAACAGACTACAATTGAATATCTACC
* * * * * * *
901 TCGTGACACATATAGAAAAAGGCATTTATTAACAAGAAAAGCTCATTTATAGCCATCCATTCCTT
192 TCGAGACACAAAGAAAAAAAAGCATTCATTAACAAGAAAAGCCCATTTATAGCCATCCATTCCTT
* * * *
966 CTAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
257 CAAAAGCCTTATTACTCACTTTAAATGGCTGTACAATCTCATAAT
1011 NNNNNNNNNN
Statistics
Matches: 523, Mismatches: 99, Indels: 47
0.78 0.15 0.07
Matches are distributed among these distances:
338 85 0.16
339 4 0.01
340 38 0.07
341 135 0.26
342 7 0.01
343 21 0.04
344 16 0.03
345 129 0.25
346 14 0.03
347 69 0.13
348 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (338 bp):
ACTATAATTGAATGTCTACCTCAAGAAACGTAAAGAAAAAAGCATTCTTTGAAGAGAAATGTCCA
TTTATAGTCACCTATTCATTCAAAAGCCTTATTACTCACTTTAAATAATTTTATAATCTCAAAAT
TCATTTTAAGTTCAATTTGTTTACATTTTTGGTCAAAACAGACTACAATTGAATATCTACCTCGA
GACACAAAGAAAAAAAAGCATTCATTAACAAGAAAAGCCCATTTATAGCCATCCATTCCTTCAAA
AGCCTTATTACTCACTTTAAATGGCTGTACAATCTCATAATTTTAGGTTTAATTTTTTTACATTA
TTGGTTAAAACAA
Found at i:928 original size:171 final size:168
Alignment explanation
Indices: 26--1006 Score: 789
Period size: 172 Copynumber: 5.7 Consensus size: 168
16 CAAAAGAGAC
* * ** * * * ** * *
26 TATAATTGATTGTCTATCTCGAGAAATGTAAAGAAAAATGAATTCATTTGGAACAAAAGTCTATT
1 TATAATTGAATGTCTACCTCGAGAAACAT-AAGAAAAAGGCATTTA-TTACAAGAAAAGTCCATT
* * * *
91 TATAATCACCTATTACTTCAAAAGCCTTATTGCTCACTTTAAATGGTTTTATAATCTCAAAATCA
64 TATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAATTC-
**
156 ATTTTAAGTTCAATTTTTTTTA-ATTTTTTGACTAAAACAAAT
128 ATTTTAAGTTCAA-TTTTTTTACA-TTTTTGGTTAAAACAAAT
* * ** * * * * *
198 TATAATTGAATGTTTACATTTAGAAACATGAAGTAAAAGGTATTCATTACAAAGAAAAATCTATT
1 TATAATTGAATGTCTACCTCGAGAAACAT-AAGAAAAAGGCATTTATTAC-AAGAAAAGTCCATT
** * * ** * * *
263 TATAGTC-TTTCATTCCTTGAAAAGCGTTATTGGTCATTTTAAATGATTTTATTATCTCAAAATT
64 TATAGTCACCT-ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTC-AAATT
* ** * *
327 GATTTTCTGTTCAATTATGTTTTACATTTTTGGTTAAGACAAAC
127 CATTTTAAGTTCAATT-T-TTTTACATTTTTGGTTAAAACAAAT
* * * *
371 TATAATTGAATGTCTACCTCAAGAAACGTGAAGAAAAAAGCATTCT-TTGA-AGAGAAATGTCCA
1 TATAATTGAATGTCTACCTCGAGAAACAT-AAGAAAAAGGCATT-TATT-ACA-AGAAAAGTCCA
** * * * * ** *
434 TTTATAGTTTCTTATTCATTCAGAAGCCTTATTACTGA-TTGTAAATAATTTTATTATCTCAAAA
62 TTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTT-TAAATGGTTTTATAATCTC-AAA
** * * *
498 TTCATTTTAAGTTCTGTTTTTTTAACATTTTTGGTCAAAACATAC
125 TTCATTTTAAGTTCAATTTTTTT-ACATTTTTGGTTAAAACAAAT
* * * * *
543 TATAATTGAATGTCTATCC-CGAGAAACACAAAGAAAAAAAAGCATTCATTGATAA-AAGAAGCC
1 TATAATTGAATGTCTA-CCTCGAGAAACA-TAAG--AAAAAGGCATTTATT-ACAAGAA-AAGTC
** * * * * *
606 CATTTATAGTCTTCTATTCCTTCAAAAGCCTTATTAGTCGCTTTAAATGGCTGTACAATCTC--A
60 CATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAA
* * * * **
669 -TAATTTTAGGTTTAATTTTTTTACATTATTGGTTAAAACAGCT
125 TTCATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAAAT
* * * *
712 TATAATTGAATGTCTACCTCGAGAAACGTAAAGAGAACGGCATTTATTGGCAAGAAAAGTCCATT
1 TATAATTGAATGTCTACCTCGAGAAACAT-AAGAAAAAGGCATTTATT-ACAAGAAAAGTCCATT
* *
777 TATGGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCAAATTTC
64 TATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAA-TTC
* *
842 ATTTTAAGTTCAATTTGTTTACATTTTTGGTTAAAACAGAT
128 ATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAAAT
* * * *
883 TACAATTGAATATCTACCTCGTGACACATATAGAAAAAGGCATTTATTAACAAGAAAAG-CTCAT
1 TATAATTGAATGTCTACCTCGAGAAACATA-AGAAAAAGGCATTTATT-ACAAGAAAAGTC-CAT
* *
947 TTATAGCCATCC-ATTCCTTCTAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCA
63 TTATAGTCA-CCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCA
1007 TAATNNNNNN
Statistics
Matches: 648, Mismatches: 131, Indels: 61
0.77 0.16 0.07
Matches are distributed among these distances:
167 71 0.11
168 4 0.01
169 44 0.07
170 19 0.03
171 151 0.23
172 154 0.24
173 134 0.21
174 68 0.10
175 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (168 bp):
TATAATTGAATGTCTACCTCGAGAAACATAAGAAAAAGGCATTTATTACAAGAAAAGTCCATTTA
TAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAATTCATT
TTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAAAT
Found at i:2854 original size:170 final size:169
Alignment explanation
Indices: 2678--3032 Score: 399
Period size: 170 Copynumber: 2.1 Consensus size: 169
2668 NNNNNNNNNN
*
2678 CATTCTTTCAAAAGCCTTATTATTCGCCTTAAATGTTTTTATAATCTCATAATTGATTTTAACTT
1 CATTCTTTCAAAAGCCTTATTATTCGCCTTAAATGGTTTTATAATCTCATAATTGATTTTAACTT
** * * * *
2743 TCATTTTTTATATTTTTTATTAAAACATACTGTAATTAAATGCTTACCTTGGGAAACGCGT-GAA
66 GAATGTTTTACATTTTTTATTAAAACATACTATAATTAAATGCTT-CCTTGAGAAACGCGTAG-A
* *
2807 AAAATCCATTTATTTAGAAAAAAAGTCCATTTATAGTCTCT
129 AAAATCCATTTATTTAGAAAAAAACTCCATTTATAGTCTCC
* ********** *
2848 CATTCTTTGAAAAGCCTTATTNNNNNNNNNNAATGGTTTTATAATCTCATAATTGATTTTAAGTT
1 CATTCTTTCAAAAGCCTTATTATTCGCCTTAAATGGTTTTATAATCTCATAATTGATTTTAACTT
* * * * * * *
2913 GAATGTTTTGCATTTTTTATTGACACATACTATAATTAAATGCTTGCTTTAGAAATGTGTAGAAA
66 GAATGTTTTACATTTTTTATTAAAACATACTATAATTAAATGCTTCCTTGAGAAACGCGTAGAAA
* *
2978 AATCCATTTATTTAGAAGAAAACTCTATTTATAGTCTCC
131 AATCCATTTATTTAGAAAAAAACTCCATTTATAGTCTCC
3017 CATTAC-TTCAAAAGCC
1 CATT-CTTTCAAAAGCC
3033 NNNNNNNNNN
Statistics
Matches: 152, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
169 61 0.40
170 91 0.60
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.41
Consensus pattern (169 bp):
CATTCTTTCAAAAGCCTTATTATTCGCCTTAAATGGTTTTATAATCTCATAATTGATTTTAACTT
GAATGTTTTACATTTTTTATTAAAACATACTATAATTAAATGCTTCCTTGAGAAACGCGTAGAAA
AATCCATTTATTTAGAAAAAAACTCCATTTATAGTCTCC
Done.