Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397556.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1474.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7647
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.26
Warning! 2335 characters in sequence are not A, C, G, or T
Found at i:1242 original size:170 final size:170
Alignment explanation
Indices: 884--3098 Score: 1044
Period size: 170 Copynumber: 13.0 Consensus size: 170
874 NNNNNNNCCT
* * * * ** * ** *
884 CCCATTCCTTTAATAGCCTTTTTACTCATTCTAAATAATTTTATAATCTCACAATCAAATTTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * * * * *
949 TTCAATCTTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTCTCCCTTGATAAGA-GTGA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAA-ACATGA
* * *
1013 AGAAAAAAAGCATTCATTGGCAAGAAAAGTCTATTTATAGCCT
130 AG--AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
********** * * * *
1056 NNNNNNNNNNCAAAAGCCTTATTACTCATTTTAAATGGTTTTCTAAACTAATAATTGACTTTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * * * *
1121 TTGAATTTTTTTACATTTGTGATT-AAACAGACAACAATTGACTATCTATCTCGAGAAACATGAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
* *
1185 GACAAAAGCATTTATTGGCAAGAAAAGTCTATTTATAGTCA
131 GA-AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * *************** * *
1226 CCAATTCTTTCAAAAGCCTTATTACTNNNNNNNNNNNNNNNTCTAATCTCATAATTGATTTTAGG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * *
1291 TTGATTTTTTTTACATTTTTGATTAAAACAAACTATAATTGAATATTTACCTTGAG-AACATGAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
* *
1355 GAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTCA
131 G-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * * * * * *
1396 CCCTTTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAATTGATTTTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * * * * *
1461 TTGAGTATTTTTACATTTTTCATTAAAATAGGCTATAATTGACTGTTTACCTTGAGAAATGA-GA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAA-CATGA
********** *
1525 AGAAAAAAGCATTCATTGGCANNNNNNNNNNATTTATAGCCA
130 AG-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * * * * *
1567 CTCATTCCTTCAATAGTCTTATTACTCGTTTTAAATGG-TTTATAATCTAATAATTGATTTTAAA
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * * *
1631 TTAAATTATTTTATATTTTTGATTAAAACAGA-TAAAAATTGAATGTCTATCTCGAGAAACATGA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACT-ATAATTGAATGTTTACCTCGAGAAACATGA
* **
1695 AGGAAAAAGTATTCATTATCAAGAAAAGTCCATTTATTAGTCA
130 A-GAAAAAGCATTCATTGGCAAGAAAAGTCCATTTA-TAGTCA
* * * *
1738 CCCATTCCTTCAAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATGTCATAACTGATTTTAAA
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * **
1803 TTGAATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACTTCAAGAAATGTGAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
* *
1868 GAAAAACACATTCATTGGCAAGAAAAGTCCATTTATAGTCN
131 GAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
***************** ** * * *
1909 NNNNNNNNNNNNNNNNTCTTATTACTCGCTTTAAATAG-TTTATAATCTAATAATTGATATTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * ** * * * * *
1973 TTGAAATTTTTTATATTTTTCATTAAAACAGACTATAATTGAACATCTGCCTTGACAAACGTGAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
** * ********** * *
2038 GAAAAATGCATTCATTGATAAAAAAAGNNNNNNNNNNGCCT
131 GAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * * * * ** * * *
2079 CCCATTCCTTTAATAGCCTTTTTACTCGTTCTAAATCATATTATAATCTTATAATTAATTTTAAA
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTT-AA
* * * * * ** *
2144 GGT-AATTTTTTTTATATTTTTTATTAAAACAGGCTATAATTGAATGTCTGTCTTGAGAAA-AGT
65 GTTGAA-TTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACA-T
* * ** * ******
2207 AAAGGAAATAGCATTCATTGATAAGAAAAGTTCATTTANNNNNN
128 GAA-GAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
**** * * * * * * * *
2251 NNNNTTCTTTTAATAGCCTTTTTACTCATTTTGAATGATTTTATAATCTCATAATTAAATTTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
********** * *
2316 NNNNNNNNNNTTACATTTTTTATTAAAACAGACTATAATTGAATGTTT-CTCTTGAGAAA-AGTG
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTAC-CTCGAGAAACA-TG
* * *
2379 AAGAAAAAGAGCATTCATTGGCAAGAAAAGTCTATTTATAGCCT
129 AAG-AAAA-AGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* ********** * * * *
2423 CCAATTCCNNNNNNNNNNTTATTACTCATTTTAAATAGTTTTTTAATCTAATAATTGATTTTTAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* ********** * * * * * *
2488 TTAAATTTTTTTACATTTTTGATTAAANNNNNNNNNNATTGACTGTCTATCTTGAGAAACGTAAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
* **********
2553 GACAAAAGCATTCATTGGCAAGAAAAGTCTANNNNNNNNNN
131 GA-AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * *** * * * *
2594 CCTATTCCTTCAAAAGACTTATTACTTGCTTTAAAAGATTTTCTAATCTCATAATTGATTTTAGG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
********** * *
2659 TTGAATTNNNNNNNNNNTTTGATTAAAACAGACTATAATTGAATATTTACCTCTAGAAACATGAA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
* * *
2724 GAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTTA
131 G-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* * * * * * *
2765 -CCATTTCCTTCAAAAGCCATAATACTAACTTCAAATAG-TTTATAATCTCATAAGTGATTTTAA
1 CCCA-TTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAA
* * * * * *
2828 GTTGAATATTTTTATATTTTTTG-TTATAACAGGCTATAATTGAATGTTTACCTTGAGAAATATG
65 GTTGAATTTTTTTACA-TTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATG
* * * *
2892 AAGAAAAAAGCAATCATTGGCAAGAAAAGTCTATTTATAGCCT
129 AAG-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
* ************ ** *
2935 CTCATTCCTNNNNNNNNNNNNTTACTCGCTTTAAATGG-TTTATAATCTAATAATTGATTTTAAG
1 CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
* * * * * * *
2999 TTGAATTTTTTGATA-TTTTGATTAAAACAGA-TAATAATTGATTGTCTATCTCAAGAAACGTGA
66 TTGAATTTTTTTACATTTTTGATTAAAACAGACT-ATAATTGAATGTTTACCTCGAGAAACATGA
* ** *
3062 AGGAAAAAGTATTCATTATCAAGAAAAGTCTATTTAT
130 A-GAAAAAGCATTCATTGGCAAGAAAAGTCCATTTAT
3099 NNNNNNNNNN
Statistics
Matches: 1485, Mismatches: 526, Indels: 67
0.71 0.25 0.03
Matches are distributed among these distances:
168 6 0.00
169 65 0.04
170 590 0.40
171 424 0.29
172 394 0.27
173 6 0.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.36
Consensus pattern (170 bp):
CCCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG
TTGAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATGTTTACCTCGAGAAACATGAA
GAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCA
Found at i:1904 original size:342 final size:340
Alignment explanation
Indices: 1269--3098 Score: 824
Period size: 342 Copynumber: 5.4 Consensus size: 340
1259 NNNNNNNNTC
* ** * * * *
1269 TAATCTCATAATTGATTTTAGGTTGATTTTTTTTACATTTTTGATTAAAACAAACTATAATTGAA
1 TAATCTAATAATTGATTTTAAATTAAATTATTTTACATTTTTGATTAAAACAAACTAAAATTGAA
* *
1334 TATTTACCTTGAGAACATGAAGAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTCACCC
66 TATCTACCTCGAGAACATGAAGAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTCACCC
* * *
1399 TTTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAATTGATTTTAAGTTG
131 ATTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAACTGATTTTAAATTG
* * * * *
1464 AGTATTTTTACATTTTTCATTAAAATAGGCTATAATTGACTGTTTACCTTGAGAAATGAGAAGAA
196 AATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTTAAGAAATGAGAAGAA
**********
1529 AAAAGCATTCATTGGCANNNNNNNNNNATTTATAGCCACTCATTCCTTCAATAGTCTTATTACTC
261 AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGCCACTCATTCCTTCAATAGTCTTATTACTC
1594 GTTTTAAATGGTTTA
326 GTTTTAAATGGTTTA
* *
1609 TAATCTAATAATTGATTTTAAATTAAATTATTTTATATTTTTGATTAAAACAGA-TAAAAATTGA
1 TAATCTAATAATTGATTTTAAATTAAATTATTTTACATTTTTGATTAAAACAAACT-AAAATTGA
* * * * *
1673 ATGTCTATCTCGAGAAACATGAAGGAAAAAGTATTCATT-ATCAAGAAAAGTCCATTTATTAGTC
65 ATATCTACCTCGAG-AACATGAAGAAAAAAGCATTCATTGA-CAAGAAAAATCCATTTA-TAGTC
* * * * * **
1737 ACCCATTCCTTCAAAAGCCTTATTACTCAGTTTAAATGGTTTTATAATGTCATAACTGATTTTAA
127 ACCCATTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAACTGATTTTAA
*
1802 ATTGAATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTA-CTTCAAGAAATGTG
192 ATTGAATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTT-AAGAAATGAG
* *****************
1866 AAGAAAAACA-CATTCATTGGCAAGAAAAGTCCATTTATAGTCNNNNNNNNNNNNNNNNNTCTTA
256 AAGAAAAA-AGCATTCATTGGCAAGAAAAGTCCATTTATAGCCACTCATTCCTTCAATAGTCTTA
* *
1930 TTACTCGCTTTAAATAGTTTA
320 TTACTCGTTTTAAATGGTTTA
* * * * * *
1951 TAATCTAATAATTGATATTAAGTTGAAATT-TTTTATATTTTTCATTAAAACAGACTATAATTGA
1 TAATCTAATAATTGATTTTAAATT-AAATTATTTTACATTTTTGATTAAAACAAACTAAAATTGA
* * * * * * * ********** * *
2015 ACATCTGCCTTGACAAACGTGAAGAAAAATGCATTCATTGATAA-AAAAAGNNNNNNNNNNGCCT
65 ATATCTACCTCGA-GAACATGAAGAAAAAAGCATTCATTGACAAGAAAAA-TCCATTTATAGTCA
* * * * * * * * *
2079 CCCATTCCTTTAATAGCCTTTTTACT--CGTTCTAAATCA-TATTATAATCTTATAATTAATTTT
128 CCCATTCCTTCAAAAGCCATATTACTAAC-TTC-AAAT-AGTTTTATAAACTCATAACTGATTTT
* * * * * * ** * *
2141 AAA-GGTAATTTTTTTTATATTTTTTATTAAAACAGGCTATAATTGAATGTCTGTCTTGAGAAAA
190 AAATTG-AA-TATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTTAAGAAAT
* * ** * ********** * * *
2205 GTA-AAGGAAATAGCATTCATTGATAAGAAAAGTTCATTTANNNNNNNNNNTTCTTTTAATAGCC
253 G-AGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGCCACTCATTCCTTCAATAGTC
* * * *
2269 TTTTTACTCATTTTGAATGATTTTA
317 TTATTACTCGTTTTAAATG-GTTTA
* * * *********** * * *
2294 TAATCTCATAATTAAATTTAAGNNNNNNNNNNTTACATTTTTTATTAAAACAGACTATAATTGAA
1 TAATCTAATAATTGATTTTAAATTAAATTATTTTACATTTTTGATTAAAACAAACTAAAATTGAA
* * * * * * * * *
2359 TGT-TTCTCTTGAGAAAAGTGAAGAAAAAGAGCATTCATTGGCAAGAAAAGTCTATTTATAGCCT
66 TATCTAC-CTCGAGAACA-TGAAGAAAAA-AGCATTCATTGACAAGAAAAATCCATTTATAGTCA
* *********** * * * * * * * * *
2423 CCAATTCCNNNNNNNNNNTTATTACTCATTTTAAATAGTTTTTTAATCTAATAATTGATTTTTAG
128 CCCATTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAACTGATTTTAAA
* * * ********** * * * * *
2488 TTAAATTTTTTTACATTTTTGATTAAANNNNNNNNNNATTGACTGTCTATCTTGAGAAACGTA-A
193 TTGAATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTTAAGAAATG-AGA
* * ******** * *
2552 AGACAAAAGCATTCATTGGCAAGAAAAGTCTANNNNNNNNNNC-CT-ATTCCTTCAAAAGACTTA
257 AGAAAAAAGCATTCATTGGCAAGAAAAGTCCA--TTTATAGCCACTCATTCCTTCAATAGTCTTA
* * * * *
2615 TTACTTGCTTTAAAAGATTTTC
320 TTACTCGTTTTAAATG-GTTTA
* ** * ********** * *
2637 TAATCTCATAATTGATTTTAGGTTGAATTNNNNNNNNNNTTTGATTAAAACAGACTATAATTGAA
1 TAATCTAATAATTGATTTTAAATTAAATTATTTTACATTTTTGATTAAAACAAACTAAAATTGAA
* * *
2702 TATTTACCTCTAGAAACATGAAGAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTTA-C
66 TATCTACCTCGAG-AACATGAAGAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTCACC
* * * *
2766 CATTTCCTTCAAAAGCCATAATACTAACTTCAAATAG-TTTATAATCTCATAAGTGATTTTAAGT
130 CA-TTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAACTGATTTTAAAT
* ** * * *
2830 TGAATATTTTTATATTTTTTGTTATAACAGGCTATAATTGAATGTTTACCTTGAGAAAT-ATGAA
194 TGAATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTTAAGAAATGA-GAA
* * * ************
2894 GAAAAAAGCAATCATTGGCAAGAAAAGTCTATTTATAGCCTCTCATTCCTNNNNNNNNNNNNTTA
258 GAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGCCACTCATTCCTTCAATAGTCTTATTA
*
2959 CTCGCTTTAAATGGTTTA
323 CTCGTTTTAAATGGTTTA
* * * *
2977 TAATCTAATAATTGATTTTAAGTTGAATT-TTTT-GATATTTTGATTAAAACAGA-TAATAATTG
1 TAATCTAATAATTGATTTTAAATTAAATTATTTTACAT-TTTTGATTAAAACAAACTAA-AATTG
* * * * * * * * *
3039 ATTGTCTATCTCAAGAAACGTGAAGGAAAAAGTATTCATT-ATCAAGAAAAGTCTATTTAT
64 AATATCTACCTCGAG-AACATGAAGAAAAAAGCATTCATTGA-CAAGAAAAATCCATTTAT
3099 NNNNNNNNNN
Statistics
Matches: 1095, Mismatches: 354, Indels: 83
0.71 0.23 0.05
Matches are distributed among these distances:
338 3 0.00
339 71 0.06
340 99 0.09
341 214 0.20
342 395 0.36
343 241 0.22
344 62 0.06
345 10 0.01
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.37
Consensus pattern (340 bp):
TAATCTAATAATTGATTTTAAATTAAATTATTTTACATTTTTGATTAAAACAAACTAAAATTGAA
TATCTACCTCGAGAACATGAAGAAAAAAGCATTCATTGACAAGAAAAATCCATTTATAGTCACCC
ATTCCTTCAAAAGCCATATTACTAACTTCAAATAGTTTTATAAACTCATAACTGATTTTAAATTG
AATATTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTTTACCTTAAGAAATGAGAAGAA
AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGCCACTCATTCCTTCAATAGTCTTATTACTC
GTTTTAAATGGTTTA
Found at i:2297 original size:172 final size:162
Alignment explanation
Indices: 2082--2417 Score: 307
Period size: 172 Copynumber: 2.0 Consensus size: 162
2072 NNNGCCTCCC
* * * *
2082 ATTCCTTTAATAGCCTTTTTACTCGTTCTAAATCATATTATAATCTTATAATTAATTTTAAAGGT
1 ATTCTTTTAATAGCCTTTTTACTCATTCTAAATCATATTATAATCTCATAATTAAATTT-AAGGT
* * *
2147 AATTTTTTTTATATTTTTTATTAAAACAGGCTATAATTGAATGTCTGTCTTGAGAAAAGTAAAG-
65 AATTTTTTTTACATTTTTTATTAAAACAGACTATAATTGAATGTCTCTCTTGAGAAAAGTAAAGA
* * *
2211 GAAATAGCATTCATTGATAAGAAAAGTTCATTT
130 AAAAGAGCATTCATTGACAAGAAAAGTTCATTT
* * * *
2244 ANNNNNNNNNNTTCTTTTAATAGCCTTTTTACTCATTTTGAATGATTTTATAATCTCATAATTAA
1 A----------TTCTTTTAATAGCCTTTTTACTCATTCTAAATCATATTATAATCTCATAATTAA
********** *
2309 ATTTAAGNNNNNNNNNNTTACATTTTTTATTAAAACAGACTATAATTGAATGTTTCTCTTGAGAA
56 ATTTAAGGTAATTTTTTTTACATTTTTTATTAAAACAGACTATAATTGAATGTCTCTCTTGAGAA
* *
2374 AAGTGAAGAAAAAGAGCATTCATTGGCAAGAAAAG-TCTATTT
121 AAGTAAAGAAAAAGAGCATTCATTGACAAGAAAAGTTC-ATTT
2416 AT
1 AT
2418 AGCCTCCAAT
Statistics
Matches: 135, Mismatches: 27, Indels: 24
0.73 0.15 0.13
Matches are distributed among these distances:
162 2 0.01
171 56 0.41
172 77 0.57
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.40
Consensus pattern (162 bp):
ATTCTTTTAATAGCCTTTTTACTCATTCTAAATCATATTATAATCTCATAATTAAATTTAAGGTA
ATTTTTTTTACATTTTTTATTAAAACAGACTATAATTGAATGTCTCTCTTGAGAAAAGTAAAGAA
AAAGAGCATTCATTGACAAGAAAAGTTCATTT
Found at i:4828 original size:171 final size:159
Alignment explanation
Indices: 4634--4966 Score: 310
Period size: 171 Copynumber: 2.0 Consensus size: 159
4624 NNNNNNNNNN
* * * * *
4634 ATAATCTCATAATTAAATTTAAGTTCAATTTTTTTACATTTTTCATTAAAACAGGA-TATAATTG
1 ATAATCTAATAATTAAATTTAAGTTAAATTTTTTGACATTTTTCATTAAAACA-GACAATAACTG
* * *
4698 AATGTTTCCCTTGAGAAAAGTGAAGAAAAAAAGCATTCATTGAT-AAGAAAAGTCTATCTATAGC
65 AAAGTCTCCCTCGAGAAAAGTGAAG-AAAAAAGCATTCATT-ATCAA-AAAAGTCTATCTATAGC
* *
4762 CTCTCATTCCTTCAAAAGCCTTATTACTCGNNNNNNNNNNTTT
127 CACCCATTCCTTCAAAAGCCTTATTACTCG----------TTT
* * * * *
4805 ATAATCTAATAATTGATTTTAAGTTAAATTTTTTGATATTTTTGATTAAAATAGACAATAACTGA
1 ATAATCTAATAATTAAATTTAAGTTAAATTTTTTGACATTTTTCATTAAAACAGACAATAACTGA
* * * * * * *
4870 AAGTCTCTCTCGAGAAACGTGGAGGAAAAAGTATTCATTATCGAAAAAAGTCTATTTATAGTCAC
66 AAGTCTCCCTCGAGAAAAGTGAAGAAAAAAGCATTCATTATC-AAAAAAGTCTATCTATAGCCAC
4935 CCATTCCTTCAAAAGCCTTATTACTCAGTTT
130 CCATTCCTTCAAAAGCCTTATTACTC-GTTT
4966 A
1 A
4967 NNNNNNNNNN
Statistics
Matches: 136, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
161 4 0.03
169 2 0.01
170 57 0.42
171 73 0.54
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.36
Consensus pattern (159 bp):
ATAATCTAATAATTAAATTTAAGTTAAATTTTTTGACATTTTTCATTAAAACAGACAATAACTGA
AAGTCTCCCTCGAGAAAAGTGAAGAAAAAAGCATTCATTATCAAAAAAGTCTATCTATAGCCACC
CATTCCTTCAAAAGCCTTATTACTCGTTT
Done.