Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400300.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3506.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5742
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.19

Warning! 2848 characters in sequence are not A, C, G, or T


Found at i:1107 original size:169 final size:171

Alignment explanation


    Indices: 751--1136  Score: 485
    Period size: 169  Copynumber: 2.3  Consensus size: 171

        741 NNNNNNNNNN

                        *        *               *          **   *           
        751 AGATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCAAAGGAATGGGTGACCATAAATAGACT
          1 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGAAGACAATAAATAGACT

                                      *                           *          
        816 TTTCTTCCTAATGAATACATTTTTCTCCACGTTTCTCAAAGTAAACATTCAATTGTAGTCTGTTT
         66 TTTCTTCCTAATGAATACATTTTTCTACACGTTTCTCAAAGTAAACATTCAATTATAGTCTGTTT

               *             *    *                 *
        881 TAATAAAAAATATAAAACAATTTAACCTAAAATCAATTATG
        131 TAACAAAAAATATAAAAAAATTCAACCTAAAATCAATTATA

             *                      *                                   *    
        922 ATATTATAAAACCATTTAAAGCGACTAATAAGGCTTTTAAAGGAATGGAAGACAATAAATGGACT
          1 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGAAGACAATAAATAGACT

                              *            *       * *                   *   
        987 TTT-TT-CTCAATGAATGGC-TTTTTCTACATGTTTCTCGAGGTAAACATTCAA-TATAGTTTGT
         66 TTTCTTCCT-AATGAAT-ACATTTTTCTACACGTTTCTCAAAGTAAACATTCAATTATAGTCTGT

                         *              * *            
       1048 TTTAACAAAAAATGTAAAAAAATTCAACTTGAAATCAATTATA
        129 TTTAACAAAAAATATAAAAAAATTCAACCTAAAATCAATTATA

                 *                                 *       
       1091 AGATTGTAAAACCATTTAAAGC-ATGTAATAAGGCTTTTGAAGGAAT
          1 AGATTATAAAACCATTTAAAGCGA-GTAATAAGGCTTTTAAAGGAAT

       1137 NNNNNNNNNN


Statistics
Matches: 185,  Mismatches: 27, Indels: 8
        0.84            0.12        0.04

Matches are distributed among these distances:
 168    1  0.01
 169   86  0.46
 170   38  0.21
 171   60  0.32

ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34


Consensus pattern (171 bp):   
AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGAAGACAATAAATAGACT
TTTCTTCCTAATGAATACATTTTTCTACACGTTTCTCAAAGTAAACATTCAATTATAGTCTGTTT
TAACAAAAAATATAAAAAAATTCAACCTAAAATCAATTATA
Done.