Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400302.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3508.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1792
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.34

Warning! 194 characters in sequence are not A, C, G, or T


Found at i:1333 original size:171 final size:171

Alignment explanation


    Indices: 980--1518  Score: 475
    Period size: 171  Copynumber: 3.1  Consensus size: 171

        970 NNNNNNNNNN

                                                      *            *         
        980 AATAATTTAAAAG-GAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGATTTTTCTTAC
          1 AATAATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTCACTATAAATAGACTTTTCTTAC

                       *  *    *  *       *                   * *            
       1044 TAATGAATGTATTTTTTTTTCATGTTTGTCGAGGTAAACATTCAATTATTGTGTGTTTTAACTAA
         65 TAATGAATG-ACTTCTTTTACACGTTTGTCAAGGTAAACATTCAATTATTATCTGTTTTAACTAA

                 *  *                 *         *      
       1109 AAATGTAACAAAATTGAACTTAAAATTAATTATGAGTTTATAA
        129 AAATGAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAA

               *          *         *             *            *             
       1152 AATCATTTAAAGCGTGTAATAAGGGTTTTGAAGGAATGGGTCACTATAAATGGACTTTTCTT-CT
          1 AATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTCACTATAAATAGACTTTTCTTACT

                                       *                                     
       1216 CAATGAAT-AGCTTCTTTTACACGTTTTTCAAGGTAAACATTCAATTATTATCTGTTTTAACTAA
         66 -AATGAATGA-CTTCTTTTACACGTTTGTCAAGGTAAACATTCAATTATTATCTGTTTTAACT-A

                            *        *      *           
       1280 AAAAT-AAAAAAAATTTAACTTAAAGTCAATTTTGAGATTATAA
        128 AAAATGAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAA

                             **********      *   *   *         *            *
       1323 AATAATTTAAAGCGAGTNNNNNNNNNNTTGAAGAAATAAGTGACTATAAATGGACTTTTCTTACC
          1 AATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTCACTATAAATAGACTTTTCTTACT

              *                *       *                 *       *         * 
       1388 AACGAAT-ACGTT-TTTCTTCACGTTTCTCCAA-GTAGAA-ATTCCATTA-TAGCATGTTTTAGC
         66 AATGAATGAC-TTCTTT-TACACGTTTGT-CAAGGTA-AACATTCAATTATTATC-TGTTTTAAC

            *       *         *          *  *             
       1448 CAAAAATGTAAAAAAATTCAACTTAAAATGAAATATGAGATTATAA
        126 TAAAAATGAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAA

                       **            
       1494 AATAATTTAAAATGAGTAATAAGGC
          1 AATAATTTAAAGCGAGTAATAAGGC

       1519 NNNNNNNNNN


Statistics
Matches: 294,  Mismatches: 62, Indels: 23
        0.78            0.16        0.06

Matches are distributed among these distances:
 170   14  0.05
 171  211  0.72
 172   69  0.23

ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36


Consensus pattern (171 bp):   
AATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTCACTATAAATAGACTTTTCTTACT
AATGAATGACTTCTTTTACACGTTTGTCAAGGTAAACATTCAATTATTATCTGTTTTAACTAAAA
ATGAAAAAAAATTGAACTTAAAATCAATTATGAGATTATAA
Done.