Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400306.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3511.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1673
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.22

Warning! 762 characters in sequence are not A, C, G, or T


Found at i:589 original size:173 final size:171

Alignment explanation


    Indices: 268--663  Score: 426
    Period size: 173  Copynumber: 2.3  Consensus size: 171

        258 NNNNNNNNNN

                 *            *             *                             *  
        268 TAAATGGTTTTATAATCTCATAATTGATTTTATGTTGAATTATTTTACATTTTTAGTTAAAATAG
          1 TAAATAGTTTTATAATCTAATAATTGATTTTAAGTTGAATTATTTTACATTTTTAGTTAAAACAG

             *                        *       *     *     *            *     
        333 ACTATAATTAAATGTCTACCTTGATATACATGAATAAACAGGCATTTATTGGCAAGAAAGGTCAA
         66 AATATAATTAAATGTCTACCTTGATAAACATGAAGAAACAAGCATTCATTGGCAAGAAAAGTCAA

                                *  *                 
        398 TTTATCATCTCCTATTCCTTTAATAGCCTTATTACTCGATT
        131 TTTATCATCTCCTATTCCTTGAAAAGCCTTATTACTCGATT

                            *              *         *  *                  * 
        439 TAAATTA-TTTTATAACCTAATAATTGATTTCAAGTTGGATTTTTTTTTACATATTTT-GTTACA
          1 TAAA-TAGTTTTATAATCTAATAATTGATTTTAAGTT-GA-ATTATTTTACAT-TTTTAGTTAAA

                         *                    *                      **      
        502 ACAGAATATAATTGAATGTCTACCTTG-TGAAACGTGAAGAAACAAGCATTCATTGATTAA-AAA
         62 ACAGAATATAATTAAATGTCTACCTTGAT-AAACATGAAGAAACAAGCATTCATTG-GCAAGAAA

                *             *                          *  
        565 AGTCCATTTAT-AGTCTCTTATTCCTTGAAAAGCCTTATTACTCGCTT
        125 AGTCAATTTATCA-TCTCCTATTCCTTGAAAAGCCTTATTACTCGATT

             *                                   *    *          
        612 TGAATAGTTTTATAATCTCAA-AATTGATTTTAAGTTCAATTGTTTCTACATT
          1 TAAATAGTTTTATAATCT-AATAATTGATTTTAAGTTGAATTATTT-TACATT

        664 ATTGNNNNNN


Statistics
Matches: 185,  Mismatches: 30, Indels: 20
        0.79            0.13        0.09

Matches are distributed among these distances:
 171   35  0.19
 172   13  0.07
 173  129  0.70
 174    8  0.04

ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42


Consensus pattern (171 bp):   
TAAATAGTTTTATAATCTAATAATTGATTTTAAGTTGAATTATTTTACATTTTTAGTTAAAACAG
AATATAATTAAATGTCTACCTTGATAAACATGAAGAAACAAGCATTCATTGGCAAGAAAAGTCAA
TTTATCATCTCCTATTCCTTGAAAAGCCTTATTACTCGATT
Done.