Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400316.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3520.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2373
ACGTcount: A:0.17, C:0.08, G:0.05, T:0.17

Warning! 1238 characters in sequence are not A, C, G, or T


Found at i:1961 original size:171 final size:171

Alignment explanation


    Indices: 1615--1963  Score: 360
    Period size: 171  Copynumber: 2.0  Consensus size: 171

       1605 NNNNNNNNNN

                                    *           *           * *              
       1615 TAAAACAGACTATAATTGAATGTCTACCTCAAGAAATATGAAGAAAAAGGTATTCATTGGCAAAA
          1 TAAAACAGACTATAATTGAATGTCGACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCAAAA

                                                      *      *    *  **      
       1680 ACAGTCAATTTATAGTCACCCATTCCTTCAAAAACCTTATTATTCATTTTAAATTATTTTATAAT
         66 ACAGTCAATTTATAGTCACCCATTCCTTCAAAAACCTTATTACTCATTTGAAATGATAATATAAT

                 *   *          **********     *  *  
       1745 CTCATCATTGATTTTAAGTTNNNNNNNNNNACATTTTTTAT
        131 CTCATAATTCATTTTAAGTTGAATTTTTTTACATTCTTCAT

                                         ** *  * *                           
       1786 TAAAACAGACTATAATTGAATGTCGACCTGGATAAGCGTGAAGAAAAAAGCATTCATTGGCAAGA
          1 TAAAACAGACTATAATTGAATGTCGACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCAA-A

                   *             *             **          *         *       
       1851 AA-AGTCTATTTAT-GCTCACTCATTCCTTCAAAAGGCTTATTACTCGTTTGAAATGGTAATATA
         65 AACAGTCAATTTATAG-TCACCCATTCCTTCAAAAACCTTATTACTCATTTGAAATGATAATATA

                                                       
       1914 ATCTCATAATTCATTTTAAGTTGAATTTTTTTACATTCTTCAT
        129 ATCTCATAATTCATTTTAAGTTGAATTTTTTTACATTCTTCAT

                   
       1957 TAAAACA
          1 TAAAACA

       1964 NNNNNNNNNN


Statistics
Matches: 142,  Mismatches: 34, Indels: 4
        0.79            0.19        0.02

Matches are distributed among these distances:
 170    1  0.01
 171  138  0.97
 172    3  0.02

ACGTcount: A:0.36, C:0.15, G:0.11, T:0.35


Consensus pattern (171 bp):   
TAAAACAGACTATAATTGAATGTCGACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCAAAA
ACAGTCAATTTATAGTCACCCATTCCTTCAAAAACCTTATTACTCATTTGAAATGATAATATAAT
CTCATAATTCATTTTAAGTTGAATTTTTTTACATTCTTCAT
Done.