Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400318.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3522.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2046
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.31

Warning! 303 characters in sequence are not A, C, G, or T


Found at i:1067 original size:171 final size:162

Alignment explanation


    Indices: 719--1194  Score: 372
    Period size: 171  Copynumber: 2.8  Consensus size: 162

        709 AAAGGCATTG

                                              *            *     *      *    
        719 GTGACTATAAATGGACTTTTCTTGCCAATGAATGGTTTTTTCTTCACATTTCTCGAGATAGACAT
          1 GTGACTATAAATGGACTTTTCTTGCCAATGAATGATTTTTTCTTCACGTTTCTTGAGATACACAT

                        *        *                 * **                      
        784 TTAAATATAATCTGTTTTAACTAAAAATATAAACAAATTGAGGCTAAAATCAATTATGAGATTAT
         66 TTAAATATAATCAGTTTTAACCAAAAATATAAACAAATTCAACCTAAAATCAATTATGAGATTAT

                        *                           *
        849 AAANNNNNNNNNNGCGAGTAATAAGGCTCTTGAAGGTATGG
        131 AAA---------AGCGAGTAATAAGGCTCTTGAAGGTATGA

                                  ***                                        
        890 GTGACTATAAATGGACTTTTCTCATCAATGAATGATTTTTTCTTCACGTTTCTTGAGATACACAT
          1 GTGACTATAAATGGACTTTTCTTGCCAATGAATGATTTTTTCTTCACGTTTCTTGAGATACACAT

                *                    *  *                      *         *   
        955 TTAATTATAATCAGTTTTAACCAAATATGTAAA-ATAATTCAACCTAAAATTAATTATGAGGTTA
         66 TTAAATATAATCAGTTTTAACCAAAAATATAAACA-AATTCAACCTAAAATCAATTATGAGATTA

                        *                *      *      
       1019 TAANNNNNNNNNNAGCGAGTAATAAGGCTTTTGAA-TTCATGA
        130 TAA---------AAGCGAGTAATAAGGCTCTTGAAGGT-ATGA

                      *                            *        *                
       1061 GTGACTATAAGTAGG-CTTTTCTTGCCAATGAAT-AGTTCTTTCTTCATGTTTCTTGA-AGT-CG
          1 GTGACTATAAAT-GGACTTTTCTTGCCAATGAATGA-TTTTTTCTTCACGTTTCTTGAGA-TAC-

                 *  *   **                    *   *         * *           *  
       1122 ACATTCAATTATTCTCTA-TTTTAACCAAAAATAAAAAAAAATTCAACTTCAAATCAATTATAAG
         62 ACATTTAAATATAATC-AGTTTTAACCAAAAATATAAACAAATTCAACCTAAAATCAATTATGAG

                     
       1186 ATTATAAAA
        126 ATTATAAAA

       1195 TCATTTAAAG


Statistics
Matches: 248,  Mismatches: 40, Indels: 43
        0.75            0.12        0.13

Matches are distributed among these distances:
 162    1  0.00
 170    5  0.02
 171  238  0.96
 172    4  0.02

ACGTcount: A:0.36, C:0.12, G:0.13, T:0.35


Consensus pattern (162 bp):   
GTGACTATAAATGGACTTTTCTTGCCAATGAATGATTTTTTCTTCACGTTTCTTGAGATACACAT
TTAAATATAATCAGTTTTAACCAAAAATATAAACAAATTCAACCTAAAATCAATTATGAGATTAT
AAAAGCGAGTAATAAGGCTCTTGAAGGTATGA
Done.