Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397560.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2389.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7423
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.28

Warning! 1281 characters in sequence are not A, C, G, or T


Found at i:117 original size:18 final size:18

Alignment explanation


    Indices: 91--132  Score: 75
    Period size: 18  Copynumber: 2.3  Consensus size: 18

         81 CCATCTTTTG

                *             
         91 CATGTAATAGTATTGTCA
          1 CATGCAATAGTATTGTCA

                              
        109 CATGCAATAGTATTGTCA
          1 CATGCAATAGTATTGTCA

                  
        127 CATGCA
          1 CATGCA

        133 TATGCTAATC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Consensus pattern (18 bp):   
CATGCAATAGTATTGTCA
Done.