Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400324.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3527.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.18

Warning! 716 characters in sequence are not A, C, G, or T


Found at i:394 original size:171 final size:169

Alignment explanation


    Indices: 9--394  Score: 405
    Period size: 171  Copynumber: 2.2  Consensus size: 169

          1 AAACATGG

                  *                        *           *              * *    
          9 GTGACTGTAAATGGACTTTTCTTGCCAATGGGTATCTTTTTCTCCATGTTTCTTGAGGTAGACAT
          1 GTGACTATAAATGGAC-TTTCTT-CCAATGGATATCTTTTTCTTCATGTTTCTTGAGGCAAACAT

                                *    *                                       
         74 TCAATTATAATCTATTTTAATAAAAGATATAAAAAAATTCAACTTAAAACCAATTATGAGATTAC
         64 TCAATTATAATCTATTTTAAGAAAAAATATAAAAAAATTCAACTTAAAACCAATTATGAGATTAC

             *                        *            **
        139 ACAACAATTTAAAACGAGTAATAAGGTTTTCGAAGGCATGG
        129 AAAACAATTTAAAACGAGTAATAAGGCTTTCGAAGGCATAA

                                 **********                                  
        180 GTGACTATAAATGGACTTTNNNNNNNNNNNNATATCTTTTTCTTCATGTTTCTTGAGGCAAACAT
          1 GTGACTATAAATGGACTTT--CTTCCAATGGATATCTTTTTCTTCATGTTTCTTGAGGCAAACAT

                         *                         *         **        **   *
        245 TCAATTATAATCTGTTTTAAGAAAAAATATAAAAAAATTTAACTTAAAATTAATTATGATTTTAT
         64 TCAATTATAATCTATTTTAAGAAAAAATATAAAAAAATTCAACTTAAAACCAATTATGAGATTAC

                         ***                     *    
        310 AAAAGC-ATTTAAGGGGAGTAATAAGGCTTTCGAAGGTATAA
        129 AAAA-CAATTTAAAACGAGTAATAAGGCTTTCGAAGGCATAA

                                                *       
        351 GTGACTATAAATGGACTTCTCTTCCTAATGGATATCATTTTCTT
          1 GTGACTATAAATGGACTT-TCTTCC-AATGGATATCTTTTTCTT

        395 TATATTTTTT


Statistics
Matches: 167,  Mismatches: 43, Indels: 10
        0.76            0.20        0.05

Matches are distributed among these distances:
 170    3  0.02
 171  162  0.97
 172    2  0.01

ACGTcount: A:0.35, C:0.12, G:0.14, T:0.36


Consensus pattern (169 bp):   
GTGACTATAAATGGACTTTCTTCCAATGGATATCTTTTTCTTCATGTTTCTTGAGGCAAACATTC
AATTATAATCTATTTTAAGAAAAAATATAAAAAAATTCAACTTAAAACCAATTATGAGATTACAA
AACAATTTAAAACGAGTAATAAGGCTTTCGAAGGCATAA
Done.