Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400330.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3533.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2721
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.20

Warning! 1333 characters in sequence are not A, C, G, or T


Found at i:2152 original size:171 final size:165

Alignment explanation


    Indices: 1796--2128  Score: 371
    Period size: 171  Copynumber: 2.0  Consensus size: 165

       1786 TTCGAAAGCT

                                    *      *       *                    *    
       1796 TTATTACTCGCTTTAAATGCTTTTTTAATCTTATAATTGGTTTTAAGTAGAACTTTTTTATATTT
          1 TTATTACTCGCTTTAAATGCTTTTGTAATCTCATAATTGATTTTAAGTAGAACTTTTTTACATTT

              * *                     *    *      *                        **
       1861 TTTATTACAACATATTATAATTAAATGTCTTCCTTGAGGAACATAAAGAAAAAGATATCCATTGG
         66 TTAACTACAACATATTATAATTAAATATCTTACTTGAGAAACATAAAGAAAAAGATATCCATTAA

                                    *         ****   
       1926 CAAGAAAAGTCCATTTATAGTCACTCATNNNNNNNNNNACC
        131 CAAGAAAAGTCCATTTATAGTCACACAT------ACCTACC

                           *                             *  *   *            
       1967 TTATTACTCGCTTTATATGCTTTTGTAATCTCATAATTGATTTTATGTTGAATTTTTTTACATTT
          1 TTATTACTCGCTTTAAATGCTTTTGTAATCTCATAATTGATTTTAAGTAGAACTTTTTTACATTT

                   *              *                      *                   
       2032 TTAACTATAACATATTATAATTGAATATC-TACTTCGAGAAACATGAAGAAAAAGATATCCATTA
         66 TTAACTACAACATATTATAATTAAATATCTTACTT-GAGAAACATAAAGAAAAAGATATCCATTA

                        *      *             
       2096 ACAAGAAAAGTCTATTTATGGTCACACATACCT
        130 ACAAGAAAAGTCCATTTATAGTCACACATACCT

       2129 NNNNNNNNNN


Statistics
Matches: 136,  Mismatches: 25, Indels: 8
        0.80            0.15        0.05

Matches are distributed among these distances:
 170    4  0.03
 171  132  0.97

ACGTcount: A:0.34, C:0.13, G:0.10, T:0.40


Consensus pattern (165 bp):   
TTATTACTCGCTTTAAATGCTTTTGTAATCTCATAATTGATTTTAAGTAGAACTTTTTTACATTT
TTAACTACAACATATTATAATTAAATATCTTACTTGAGAAACATAAAGAAAAAGATATCCATTAA
CAAGAAAAGTCCATTTATAGTCACACATACCTACC
Done.