Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400335.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3538.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.26

Warning! 467 characters in sequence are not A, C, G, or T


Found at i:1097 original size:171 final size:167

Alignment explanation


    Indices: 746--1111  Score: 423
    Period size: 171  Copynumber: 2.1  Consensus size: 167

        736 NNNNNNNNNN

                             *     *                                         
        746 AATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGATTGGATGGGTGACT
          1 AATCAATTTTGAGATTAAAAAACAATTTAAAGTGAGTAATAAGGCTTTTGA-TGGATGGGTGACT

              *   *  *   *                                 *                 
        811 ATTAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCAAGTTTCTTGACGTTGACATTCAATT
         65 ATAAATAGAATTTGCTTACCAATGAA-GCCTTTTTCTTCAAGTTTCTAGACGTTGACATTCAATT

                             *******                 *
        876 ATAATCTTTTTTAANNNNNNNNNNGTAAAGAATTCAAATTTC
        129 ATAATCTTTTTTAA---AAAAGATGTAAAGAATTCAAATTTA

                                                                             
        918 AATCAATTTTGAGATTACAAAAACAATTTAAAGTGAGTAATAAGGCTTTTGGA-GGAATGGGTGA
          1 AATCAATTTTGAGATTA-AAAAACAATTTAAAGTGAGTAATAAGGCTTTT-GATGG-ATGGGTGA

                                                     *         *    *        
        982 CTATAAATAGAATTTGCTTACCAATGAA-CCTTTTTCTTCATGTTTCTAGAGGTTGGCATTCAAT
         63 CTATAAATAGAATTTGCTTACCAATGAAGCCTTTTTCTTCAAGTTTCTAGACGTTGACATTCAAT

                        *                               
       1046 TATAAT-TTGTTCTATAAAAAGATGTACAAAGAATTCAAATTTA
        128 TATAATCTT-TTTTA-AAAAAGATGT--AAAGAATTCAAATTTA

                             *     
       1089 AATCAATTTTGAGATTATAAAAC
          1 AATCAATTTTGAGATTAAAAAAC

       1112 CATNNNNNNN


Statistics
Matches: 167,  Mismatches: 20, Indels: 16
        0.82            0.10        0.08

Matches are distributed among these distances:
 169    2  0.01
 170    7  0.04
 171   74  0.44
 172   20  0.12
 173   62  0.37
 174    2  0.01

ACGTcount: A:0.35, C:0.11, G:0.15, T:0.37


Consensus pattern (167 bp):   
AATCAATTTTGAGATTAAAAAACAATTTAAAGTGAGTAATAAGGCTTTTGATGGATGGGTGACTA
TAAATAGAATTTGCTTACCAATGAAGCCTTTTTCTTCAAGTTTCTAGACGTTGACATTCAATTAT
AATCTTTTTTAAAAAAGATGTAAAGAATTCAAATTTA
Done.