Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400336.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3539.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4895
ACGTcount: A:0.23, C:0.09, G:0.08, T:0.24

Warning! 1759 characters in sequence are not A, C, G, or T


Found at i:2425 original size:170 final size:171

Alignment explanation


    Indices: 2132--2578  Score: 440
    Period size: 170  Copynumber: 2.6  Consensus size: 171

       2122 NNNNNNNNNN

                                                            *   ***      *   
       2132 TTTAGGATGAATTTTTTTATATTTTTAGTTAAAACATATTATAATTGACTATACACCTTGACAAA
          1 TTTAGGATGAATTTTTTTATATTTTTAGTTAAAACATATTATAATTGAATATTTGCCTTGAGAAA

             * *            * *     *                 *        *             
       2197 CCTAAAGACAAAGCCATTGATTGATAAGAAAAACTCATTTATTGTCACTCATGCCTTCAAAAGTC
         66 CATGAAGACAAAGCCAGTCATTGACAAGAAAAACTCATTTATAGTCACTCAAGCCTTCAAAAGTC

                                 *            *       
       2262 TTATTAC-TCGCTTTAAATAGTTTTACAATCT-ATAATTGAT
        131 TTA-TACTTCGCTTTAAATAGCTTTACAATCTCAGAATTGAT

                  *                    *      *             *                
       2302 TTTAGGCTGAATTTTTTTATATTTTTAATTAAAATATATTATAATTGATTATTTGCCTTGAGAAA
          1 TTTAGGATGAATTTTTTTATATTTTTAGTTAAAACATATTATAATTGAATATTTGCCTTGAGAAA

                         **             *     *                              
       2367 CATGAAGA-AATATTCAGTCATTTG-CAGGAAAAGC-CTATTTATAGTCACTCAAGCCTTCAAAA
         66 CATGAAGACAA-AGCCAGTCA-TTGACAAGAAAAACTC-ATTTATAGTCACTCAAGCCTTCAAAA

                   *             *      *               
       2429 GTCTTATCCTTCGCTTTAAATGGCTTTATAATCTCAGAATTGAT
        128 GTCTTATACTTCGCTTTAAATAGCTTTACAATCTCAGAATTGAT

                * *  *      *  *      *         *             *    *         
       2473 TTTAAGTTGCATTTTTGTACA-TTTTGGTTAAAACAGATTATAATTGAATGTTTGGCTTGAGAAA
          1 TTTAGGATGAATTTTTTTATATTTTTAGTTAAAACATATTATAATTGAATATTTGCCTTGAGAAA

             *           *   *          *    * *       
       2537 CGTGAAG-CAAAATCCATTCATTGACAACAAAAGCCCATTTAT
         66 CATGAAGAC-AAAGCCAGTCATTGACAAGAAAAACTCATTTAT

       2579 GGTTGTCGAT


Statistics
Matches: 227,  Mismatches: 41, Indels: 18
        0.79            0.14        0.06

Matches are distributed among these distances:
 169    8  0.04
 170  189  0.83
 171   30  0.13

ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39


Consensus pattern (171 bp):   
TTTAGGATGAATTTTTTTATATTTTTAGTTAAAACATATTATAATTGAATATTTGCCTTGAGAAA
CATGAAGACAAAGCCAGTCATTGACAAGAAAAACTCATTTATAGTCACTCAAGCCTTCAAAAGTC
TTATACTTCGCTTTAAATAGCTTTACAATCTCAGAATTGAT
Done.