Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400338.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3540.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2133
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.21

Warning! 883 characters in sequence are not A, C, G, or T


Found at i:2048 original size:21 final size:21

Alignment explanation


    Indices: 2022--2077  Score: 96
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       2012 ATTCGTGACT

                                 
       2022 ATAAATGGACTTTTCTAGTCA
          1 ATAAATGGACTTTTCTAGTCA

                        *        
       2043 ATAAATGGACTTGTCTAGTCA
          1 ATAAATGGACTTTTCTAGTCA

                           
       2064 ATAAAT-GACTTTTC
          1 ATAAATGGACTTTTC

       2078 CTTCATGTTT


Statistics
Matches: 33,  Mismatches: 2, Indels: 1
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    7  0.21
  21   26  0.79

ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Consensus pattern (21 bp):   
ATAAATGGACTTTTCTAGTCA
Done.