Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400344.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3546.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.28

Warning! 298 characters in sequence are not A, C, G, or T


Found at i:940 original size:172 final size:172

Alignment explanation


    Indices: 532--946  Score: 444
    Period size: 172  Copynumber: 2.4  Consensus size: 172

        522 NNNNNNNNNN

                                     * * *                 *           *     
        532 ATTCCTTCAAAAGCCTTATTACTCGCTATGAATTATTTTATAATCTCGTAATTGATTTTTAGTT-
          1 ATTCCTTCAAAAGCCTTATTACTCGATTTAAATTATTTTATAATCTCATAATTGATTTTAAGTTG

              *                                      * *              **     
        596 AAATTTTTTCACTTGTTTGGTTAAAACAAACTATAATTGAATGTCTACCGTGAGAAACGTGAAGA
         66 AATTTTTTTCACTTGTTTGGTTAAAACAAACTATAATTGAAAGCCTACCGTGAGAAACAAGAAGA

                            *                     ** *
        661 AACAGGCATTCATTAGCAGAAAAAGTCCATTTACAGTCTTCT
        131 AACAGGCATTCATTAGAAGAAAAAGTCCATTTACAGTCACCC

                   *               * *                  *    **********      
        703 ATTCCTTTAAAAGCCTTATTACTTGTTTTAAATTATTTTATAATATCATNNNNNNNNNNAAGTTG
          1 ATTCCTTCAAAAGCCTTATTACTCGATTTAAATTATTTTATAATCTCATAATTGATTTTAAGTTG

                                         *                    *              
        768 AATTTTTTTCACATT-TTTGGTTAAAACATACTATAATTGAAAGCCTACCTTGAGAAACAAGAAG
         66 AATTTTTTTCAC-TTGTTTGGTTAAAACAAACTATAATTGAAAGCCTACCGTGAGAAACAAGAA-

                             *                  *   *    
        832 GAAA-AGGCATTCATTGGGAAGAAAAA-TCCATTTATAGTGACCC
        129 GAAACAGGCATTCATT-AGAAGAAAAAGTCCATTTACAGTCACCC

                                              **                             
        875 ATTCCTTCAAAAGCCTT-TCTACTCGATTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
          1 ATTCCTTCAAAAGCCTTAT-TACTCGATTTAAATTATTTTATAATCTCATAATTGATTTTAAGTT

                    
        939 GAATTTTT
         65 GAATTTTT

        947 NNNNNNNNNN


Statistics
Matches: 191,  Mismatches: 48, Indels: 9
        0.77            0.19        0.04

Matches are distributed among these distances:
 171   47  0.25
 172  130  0.68
 173   14  0.07

ACGTcount: A:0.33, C:0.14, G:0.12, T:0.38


Consensus pattern (172 bp):   
ATTCCTTCAAAAGCCTTATTACTCGATTTAAATTATTTTATAATCTCATAATTGATTTTAAGTTG
AATTTTTTTCACTTGTTTGGTTAAAACAAACTATAATTGAAAGCCTACCGTGAGAAACAAGAAGA
AACAGGCATTCATTAGAAGAAAAAGTCCATTTACAGTCACCC
Done.