genome.fa.s31.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397284.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_115.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1289616

Tables:   1   2   3   

This is table  3  of  3  ( 347 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835841--836196	160	2.2	159	84	4	475	33	13	22	30	1.93
835906--836216	23	13.6	23	67	9	127	33	13	23	30	1.93
840520--841210	202	3.4	202	89	1	945	41	23	13	21	1.89
841070--841121	22	2.4	22	83	0	59	55	23	7	13	1.63
842286--842456	28	6.0	28	88	1	234	30	7	31	29	1.85
842286--842456	56	3.0	56	93	1	288	30	7	31	29	1.85
842290--842456	84	2.0	85	90	2	264	29	7	32	29	1.86
847184--847310	38	3.3	38	95	0	227	35	12	32	19	1.90
854666--854715	16	3.4	15	73	21	52	24	2	12	62	1.40
854664--854717	28	1.9	28	92	7	92	22	1	11	64	1.35
860636--860681	5	8.8	5	86	9	65	21	21	0	56	1.42
875384--875452	29	2.4	29	82	4	77	21	11	7	59	1.56
875765--876128	23	15.9	23	69	4	128	34	13	22	29	1.92
875765--876107	46	7.5	46	72	4	208	34	12	22	30	1.91
875904--876241	160	2.1	160	88	1	498	35	14	21	28	1.93
875820--876082	137	1.9	137	84	0	355	35	13	21	29	1.91
876072--876128	22	2.5	22	86	8	71	33	17	21	28	1.96
876191--876263	23	3.2	23	84	0	92	32	10	26	30	1.90
883698--883766	29	2.4	29	100	0	138	27	10	27	34	1.89
889568--889647	42	1.9	42	92	0	133	37	8	16	37	1.79
900341--900390	16	3.4	15	73	21	52	22	2	14	62	1.42
900339--900392	28	1.9	28	96	0	99	20	1	12	64	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900345--900406	28	2.2	28	82	5	72	20	3	14	61	1.47
921026--921704	229	3.0	230	84	2	918	31	20	16	32	1.94
923517--923571	25	2.2	25	86	0	74	34	30	12	21	1.91
928096--928164	21	3.2	21	79	6	68	49	17	5	27	1.69
938626--939310	228	3.0	229	85	4	866	31	21	14	31	1.94
945713--945760	21	2.3	20	79	10	60	45	18	4	31	1.68
947517--947550	16	2.1	16	94	0	59	32	11	5	50	1.63
953526--953742	114	1.9	114	86	1	310	40	17	13	29	1.88
963153--963234	25	3.2	25	84	5	92	26	17	29	26	1.97
969491--969570	21	3.8	21	83	1	106	25	5	20	50	1.68
970563--970612	21	2.4	21	96	0	91	44	24	18	14	1.86
974816--974869	25	2.3	23	76	17	56	33	27	14	24	1.94
982245--982324	21	3.8	21	79	1	97	51	20	5	23	1.67
1000772--1000851	29	2.8	28	83	5	97	35	15	13	36	1.86
1000741--1000851	59	1.9	59	83	7	147	36	13	12	37	1.83
1007990--1008086	48	2.0	49	84	6	126	43	18	11	26	1.84
1018860--1018902	19	2.3	19	88	4	61	51	0	2	46	1.13
1023128--1023258	4	33.2	4	76	11	128	0	29	2	68	1.01
1023672--1023719	24	2.0	23	84	4	60	20	25	4	50	1.66
1027548--1027586	14	2.8	14	100	0	78	38	28	23	10	1.87
1029563--1029613	26	2.0	25	85	11	68	9	13	11	64	1.49
1034719--1034916	74	2.7	74	78	6	215	24	18	12	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040398--1040433	18	2.0	18	89	10	56	27	0	11	61	1.30
1041626--1041659	18	1.9	18	88	5	52	8	23	23	44	1.81
1045624--1045811	38	5.1	36	77	5	162	17	27	20	35	1.95
1045624--1045811	36	5.1	36	78	5	153	17	27	20	35	1.95
1045790--1045884	34	2.7	35	81	3	120	21	23	16	38	1.92
1056893--1057004	57	1.9	58	87	1	163	41	17	6	33	1.75
1060892--1060954	14	4.5	14	83	0	81	39	3	20	36	1.69
1064962--1064993	2	16.0	2	100	0	64	50	0	0	50	1.00
1069433--1069471	18	2.2	18	85	0	51	58	2	5	33	1.33
1070403--1070507	51	2.1	51	88	0	156	4	34	36	24	1.77
1076579--1076612	17	2.0	17	88	11	52	38	0	11	50	1.39
1085630--1085675	24	2.0	22	83	8	56	39	13	0	47	1.42
1088977--1089081	30	3.4	31	76	5	97	59	2	0	37	1.19
1092380--1092412	13	2.5	13	85	14	50	36	0	0	63	0.95
1092731--1092758	12	2.3	12	100	0	56	53	0	0	46	1.00
1092736--1092774	17	2.2	18	86	13	55	51	0	0	48	1.00
1093004--1093070	30	2.2	30	84	7	91	65	1	0	32	1.02
1093026--1093084	30	1.9	30	86	3	82	69	1	0	28	0.98
1093054--1093090	19	2.0	18	89	5	56	67	0	0	32	0.91
1098087--1098121	17	2.1	17	88	0	52	45	5	5	42	1.51
1098187--1098414	45	5.1	45	81	1	217	34	17	18	28	1.94
1098199--1098414	90	2.4	89	85	3	290	34	17	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101837--1101906	4	17.0	4	79	5	59	47	22	2	27	1.66
1101840--1101910	24	2.9	24	89	4	106	47	21	2	28	1.64
1101840--1101910	26	2.8	25	87	4	99	47	21	2	28	1.64
1101874--1102242	185	2.0	183	96	1	675	41	21	7	29	1.80
1103074--1103107	10	3.4	10	91	0	59	50	8	0	41	1.34
1110830--1110860	9	3.4	9	90	0	53	22	9	22	45	1.81
1114605--1114669	32	2.0	32	100	0	130	50	3	30	15	1.59
1141245--1141297	21	2.6	20	85	11	72	58	7	0	33	1.26
1150729--1150814	40	2.1	41	83	10	106	25	18	20	34	1.96
1150770--1150900	54	2.4	54	83	5	165	27	21	17	33	1.96
1151479--1151585	55	1.9	55	92	0	178	40	9	4	45	1.57
1151481--1151597	55	2.1	55	88	3	173	39	9	4	47	1.56
1154820--1154882	28	2.2	29	82	2	83	30	9	25	34	1.88
1155455--1155874	229	1.8	229	82	3	549	37	22	13	25	1.91
1156575--1156632	21	2.7	22	80	17	77	62	10	0	27	1.28
1166476--1166508	16	2.1	16	94	0	57	51	15	0	33	1.43
1166474--1166511	18	2.1	18	90	0	58	50	15	0	34	1.45
1166467--1166502	12	3.0	12	87	0	54	50	11	0	38	1.38
1185699--1185741	19	2.3	19	92	4	70	44	2	0	53	1.13
1188061--1188100	21	1.9	21	90	10	64	47	17	5	30	1.69
1199608--1199796	35	5.3	35	78	4	200	33	5	14	46	1.67
1199608--1199796	71	2.7	71	80	7	222	33	5	14	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204070--1204099	15	2.0	15	93	0	51	36	6	0	56	1.26
1208359--1208545	36	5.2	36	81	3	200	33	6	15	44	1.72
1208359--1208520	71	2.3	72	84	2	202	32	6	14	46	1.71
1208481--1208561	35	2.3	35	76	0	81	37	6	14	41	1.71
1211610--1211837	37	6.1	36	76	8	181	39	17	14	28	1.89
1211619--1211766	77	1.9	77	88	2	226	38	16	15	29	1.89
1214528--1214570	21	2.0	21	95	0	77	60	6	0	32	1.23
1215151--1215209	32	1.9	30	86	6	82	40	8	22	28	1.83
1215970--1216086	55	2.1	55	88	3	173	45	7	9	37	1.65
1216249--1216354	57	1.9	57	88	3	162	45	5	8	40	1.58
1216569--1216713	54	2.7	54	81	2	175	36	13	20	29	1.91
1216613--1216728	54	2.1	54	83	0	142	38	18	18	24	1.93
1217568--1217617	24	2.0	25	88	3	75	42	18	4	36	1.69
1226068--1226134	8	8.8	8	79	14	61	68	0	31	0	0.90
1226069--1226114	4	11.5	4	86	9	67	71	0	28	0	0.86
1228676--1228723	20	2.6	18	84	12	62	56	0	4	39	1.19
1244879--1244982	53	2.0	53	94	3	183	38	14	11	35	1.82
1261534--1261559	11	2.4	11	100	0	52	73	0	0	26	0.84
1269143--1269439	80	3.7	79	80	3	326	35	8	21	34	1.85

Tables:   1   2   3

The End!