Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400353.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3554.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.13

Warning! 941 characters in sequence are not A, C, G, or T


Found at i:823 original size:69 final size:68

Alignment explanation


    Indices: 701--834  Score: 171
    Period size: 69  Copynumber: 2.0  Consensus size: 68

        691 NNGTTTCTTT

                         **            *    *             *            *     
        701 ATGTTTCTTGAGGTTGACATTCAATTATAGTCTGTTTTAACCAAAACTATAAAAAACATTCAACT
          1 ATGTTTCTTGAGGAAGACATTCAATTACAGTCCGTTTTAACCAAAAATATAAAAAA-ATACAACT

                
        766 TTAC
         65 TTAC

                                                      *      *               
        770 ATGTTTCTTGAGGAA-AGCATTCAATTACAGTCCGTTTTAACTAAAAATGTAAAAAAATACAACT
          1 ATGTTTCTTGAGGAAGA-CATTCAATTACAGTCCGTTTTAACCAAAAATATAAAAAAATACAACT

             
        834 T
         65 T

        835 AAAATTAATT


Statistics
Matches: 56,  Mismatches: 8, Indels: 3
        0.84            0.12        0.04

Matches are distributed among these distances:
  68    9  0.16
  69   47  0.84

ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35


Consensus pattern (68 bp):   
ATGTTTCTTGAGGAAGACATTCAATTACAGTCCGTTTTAACCAAAAATATAAAAAAATACAACTT
TAC
Done.