Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400360.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3561.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27


Found at i:373 original size:52 final size:52

Alignment explanation


    Indices: 119--381  Score: 294
    Period size: 52  Copynumber: 5.1  Consensus size: 52

        109 CTTTTTGTAG

                     *     *                   * ***      *     
        119 ATAGCAAACAATGGCCAAGAAGTGAGCGATAAAGCCTATAGCCAATTTATGA
          1 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATGA

             *             *      *    *            *  *    *   
        171 AAAGCAAACTATGGCCAAGAAGCGAGCTATAAAGCTTGCGTCCGATATGTGA
          1 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATGA

             *                         *          *   **      * 
        223 AAAGCAAACTATGGCTAAGAAGTGAGCAATAAAGCTTGTGGCTGATATATAA
          1 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATGA

                   *     *                           *          
        275 ATAGCAAGCTATGACTAAGAAGTGAGCGATAAAGCTTGCGGTCAATATATGA
          1 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATGA

                                                    *            
        327 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGACCAATA-ATGTA
          1 ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATG-A

               
        379 ATA
          1 ATA

        382 TTATTACAGC


Statistics
Matches: 177,  Mismatches: 33, Indels: 2
        0.83            0.16        0.01

Matches are distributed among these distances:
  51    3  0.02
  52  174  0.98

ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21


Consensus pattern (52 bp):   
ATAGCAAACTATGGCTAAGAAGTGAGCGATAAAGCTTGCGGCCAATATATGA
Done.