Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397565.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5286.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7175
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:3088 original size:17 final size:17

Alignment explanation


    Indices: 3057--3090  Score: 52
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       3047 TGAAAATGCA

                             
       3057 AGTTTTTATGCTTTTCT
          1 AGTTTTTATGCTTTTCT

                              
       3074 AGTTTGTTATG-TTTTCT
          1 AGTTT-TTATGCTTTTCT

       3091 GGTGTCTTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17   11  0.69
  18    5  0.31

ACGTcount: A:0.12, C:0.09, G:0.15, T:0.65


Consensus pattern (17 bp):   
AGTTTTTATGCTTTTCT
Done.