Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400375.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3576.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.21

Warning! 610 characters in sequence are not A, C, G, or T


Found at i:1188 original size:21 final size:21

Alignment explanation


    Indices: 1171--1221  Score: 84
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1161 GTAAAAAGGT

                                 
       1171 TATTCATTGAGAAGAAAAGCC
          1 TATTCATTGAGAAGAAAAGCC

                *                
       1192 TATTTATTGAGAAGAAAAGCC
          1 TATTCATTGAGAAGAAAAGCC

                *    
       1213 TATTTATTG
          1 TATTCATTG

       1222 TCACTTATTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33


Consensus pattern (21 bp):   
TATTCATTGAGAAGAAAAGCC

Done.