Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400377.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3578.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3929
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.25

Warning! 1282 characters in sequence are not A, C, G, or T


Found at i:2479 original size:170 final size:170

Alignment explanation


    Indices: 2085--2500  Score: 426
    Period size: 170  Copynumber: 2.4  Consensus size: 170

       2075 NNNNNNNNNN

                                                      *   *   *              
       2085 AATGGTTTTTTAATCTCATAATTAGTTTTAAGTTGAACTTTTATATATTTGTTATTAAAACATAT
          1 AATGGTTTTTTAATCTCATAA-TAGTTTTAAGTTGAACTTTTTTATTTTTTTTATTAAAACATAT

                       *    *          *                                     
       2150 TATAATTAAATGTCTGTCTTAAGAAACGTGAAGAAAAAGATATCCACTGGTAAGAAAAATCCATT
         65 TATAATTAAATATCTGACTTAAGAAACATGAAGAAAAAGATATCCACTGGTAAGAAAAATCCATT

                  *   *                     *        
       2215 TATACTTACTTATGCCTTCGAAAGCCTTATTACTCACTTTA
        130 TATACTAACTCATGCCTTCGAAAGCCTTATTAATCACTTTA

                     * ********** *              *         *                 
       2256 AATGGTTTTGTNNNNNNNNNNTTGATTTTAAGTTGAATTTTTTTA-TATTTTTATTAAAACATAT
          1 AATGGTTTTTTAATCTCATAATAG-TTTTAAGTTGAACTTTTTTATTTTTTTTATTAAAACATAT

             *     **            *                       * *           **    
       2320 TCTAATTGTATATCT-ACATTGAGAAACATGAAGAAAAAGATATCGATTGGTTAA-AAAGGTCCA
         65 TATAATTAAATATCTGAC-TTAAGAAACATGAAGAAAAAGATATCCACTGG-TAAGAAAAATCCA

               *  *                                     
       2383 TTTGTAGTCAAC-CATGCCTTCGAAAGCCTTATTAATCACTTTA
        128 TTTATACT-AACTCATGCCTTCGAAAGCCTTATTAATCACTTTA

                                    *   *                            *   *   
       2426 AATGGTTTTTTAATCTCATAATAGGTTTCAGTTGAACTTTTTTATTTTTTTTATTAATACAGATT
          1 AATGGTTTTTTAATCTCATAATAGTTTTAAGTTGAACTTTTTTATTTTTTTTATTAAAACATATT

                      
       2491 ATAATTAAAT
         66 ATAATTAAAT

       2501 GTCTACCCCA


Statistics
Matches: 186,  Mismatches: 54, Indels: 11
        0.74            0.22        0.04

Matches are distributed among these distances:
 169   18  0.10
 170  135  0.73
 171   33  0.18

ACGTcount: A:0.34, C:0.11, G:0.12, T:0.41


Consensus pattern (170 bp):   
AATGGTTTTTTAATCTCATAATAGTTTTAAGTTGAACTTTTTTATTTTTTTTATTAAAACATATT
ATAATTAAATATCTGACTTAAGAAACATGAAGAAAAAGATATCCACTGGTAAGAAAAATCCATTT
ATACTAACTCATGCCTTCGAAAGCCTTATTAATCACTTTA
Done.