Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400390.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_359.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2286
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.15

Warning! 1351 characters in sequence are not A, C, G, or T


Found at i:1028 original size:16 final size:18

Alignment explanation


    Indices: 989--1029  Score: 50
    Period size: 16  Copynumber: 2.4  Consensus size: 18

        979 CTTTAAATGG

                              
        989 TTTTTTAAGCTTATAATT
          1 TTTTTTAAGCTTATAATT

            **                
       1007 GATTTTAAG-TTA-AATT
          1 TTTTTTAAGCTTATAATT

                   
       1023 TTTTTTA
          1 TTTTTTA

       1030 CATTTTTCAT


Statistics
Matches: 19,  Mismatches: 4, Indels: 2
        0.76            0.16        0.08

Matches are distributed among these distances:
  16    9  0.47
  17    3  0.16
  18    7  0.37

ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61


Consensus pattern (18 bp):   
TTTTTTAAGCTTATAATT
Done.