Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400415.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3612.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.10, C:0.04, G:0.04, T:0.11

Warning! 889 characters in sequence are not A, C, G, or T


Found at i:1231 original size:21 final size:21

Alignment explanation


    Indices: 1205--1244  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1195 GCATGAGTGA

                                  
       1205 CTATAAATAGGCTT-TTCTTGC
          1 CTATAAAT-GGCTTGTTCTTGC

                               
       1226 CTATAAATGGCTTGTTCTT
          1 CTATAAATGGCTTGTTCTT

       1245 CATGTTTCTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45


Consensus pattern (21 bp):   
CTATAAATGGCTTGTTCTTGC
Done.