Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400427.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3624.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.14, C:0.11, G:0.07, T:0.16

Warning! 644 characters in sequence are not A, C, G, or T


Found at i:584 original size:25 final size:25

Alignment explanation


    Indices: 550--609  Score: 106
    Period size: 25  Copynumber: 2.5  Consensus size: 25

        540 TTCCTAAAGC

                                     
        550 TTCATGTAAACTTCTCCATAACTTA
          1 TTCATGTAAACTTCTCCATAACTTA

                                     
        575 TTCATGTAAACTTCTCCATAACTTA
          1 TTCATGTAAACTTCTCCATAACTTA

                        
        600 TT-A-GTAAACT
          1 TTCATGTAAACT

        610 ATGGCCCTCG


Statistics
Matches: 35,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
  23    7  0.20
  24    1  0.03
  25   27  0.77

ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40


Consensus pattern (25 bp):   
TTCATGTAAACTTCTCCATAACTTA
Done.