Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400446.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3643.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3704
ACGTcount: A:0.24, C:0.10, G:0.08, T:0.24

Warning! 1252 characters in sequence are not A, C, G, or T


Found at i:3028 original size:171 final size:171

Alignment explanation


    Indices: 2524--3704  Score: 1227
    Period size: 171  Copynumber: 6.9  Consensus size: 171

       2514 AAGAAAAGTC

                                   *                  *       *        *     
       2524 CTTTAAATGATTTTATAACCTCAAAATTGATTTTAAGTTGAAGTTTTTTACATTTTTTACTAAAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

              *                     *       *                      *       * 
       2589 TAAATTATAATTGAATGTCTACCTCGAGAAACAAGAAGAAAAAGATATCCATTGGCAAGAAAAAT
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAGT

             * *               *    *             *  
       2654 CTACTTATAGTCACCCATGACTTCAAAAGCCTTATTACTCG
        131 CCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACACG

             **********                 *                    *  *            
       2695 CNNNNNNNNNNTTTATAACCTCATAATTAATTTTAAGTTGAATTTTTTTGTGTTTTTTTATTAAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTAT-ATTTTTTATTAAA

                               *              *       *******************    
       2760 ATAGATTATAATTGAATGTTTACCTTGAGAAACGTGAAGAAANNNNNNNNNNNNNNNNNNNAAAG
         65 ATAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAG

                               *     *                 
       2825 TCCATTTATAGTCACCCATACCTTCAAAAGCCTTATTA-ATCG
        130 TCCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACA-CG

                                  * *    *         *        *                
       2867 CTTTAAATGATTTTATAACCTCTTCATTGGTTTTAAGTTTAATTTTTTAATATTTTTTATTAAAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

             *     *                 *                           *      *    
       2932 TGGATTACAATTGAATGTCTACCTTAAGAAACGAGAAGAAAAAGATATCCATTAGTAAGACAAGT
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAGT

                       *                      *      
       2997 CCATTTATAGTAACCCATGCCTTCGAAAGCCTTAGTACACG
        131 CCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACACG

                                            *   *  *      * *             *  
       3038 CTTTAAATGATTTTATAACCTCATAATTGATTCTAAATTAAATTTTCTAATATTTTTTATTACAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

               *                                              *    * *       
       3103 TAGTTTATAATTGAATGTCTACCTTGAGAAAC-ATGAAGAAAAAGATATCTATTGATGAGAAAAG
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGA-GAAGAAAAAGATATCCATTGGTAAGAAAAG

                                      *               
       3167 TCCATTTATAGTCACCCATGCCTTCGGAAGCCTTATTACACG
        130 TCCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACACG

                *        **             *     *                *            *
       3209 CTTTCAATGATTTCGTAACCTCATAATTCATTTTCAGTTGAATTTTTTTATGTTTTTTATTAAAG
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

            *                              * *     *     *           *       
       3274 CAGATTATAATTGAATGTCTACCTTGAGAAATGTGAAGAGAAAGAAATCCATTGGTAGGAAAAGT
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAGT

                            *   *                    
       3339 CCATTTATAGTCACCCGTGCATTCGAAAGCCTTATTACACG
        131 CCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACACG

                         **                *                 * *             
       3380 CTTTAAATGATTTCGTAACCTCATAATTGATATTAAGTTGAATTTTTTTGTGTTTTTTATTAAAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

            *                       *      * *  *  *     *         * *       
       3445 CAGATTATAATTGAATGTCTACCTCGAGAAATGTGAGGAGAAAGAAATCCATTGGCAGGAAAAGT
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAGT

               *                         *   *    **  
       3510 CCACTTATAGTCACCCATGCCTTCGAAA-ACTGCATTATTCG
        131 CCATTTATAGTCACCCATGCCTTCGAAAGCCT-TATTACACG

                    *             *           *               *              
       3551 CTTTAAATAATTTTATAACCTCCTAATTGATTTTGAGTTGAATTTTTTTACATTTTTTATTAAAA
          1 CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA

                   *              *                *                * *      
       3616 TAGATTACAATTGAATGTCTACTTTGAGAAAC-ATGAAGGAAAAGATATCCATTGGCATGAAAAG
         66 TAGATTATAATTGAATGTCTACCTTGAGAAACGA-GAAGAAAAAGATATCCATTGGTAAGAAAAG

             *                *      
       3680 TTCATTTATAGTCACCCACGCCTTC
        130 TCCATTTATAGTCACCCATGCCTTC


Statistics
Matches: 824,  Mismatches: 179, Indels: 14
        0.81            0.18        0.01

Matches are distributed among these distances:
 170    3  0.00
 171  699  0.85
 172  122  0.15

ACGTcount: A:0.34, C:0.14, G:0.13, T:0.36


Consensus pattern (171 bp):   
CTTTAAATGATTTTATAACCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTTATTAAAA
TAGATTATAATTGAATGTCTACCTTGAGAAACGAGAAGAAAAAGATATCCATTGGTAAGAAAAGT
CCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACACG

Done.