Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400449.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3646.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3932
ACGTcount: A:0.19, C:0.09, G:0.08, T:0.16

Warning! 1889 characters in sequence are not A, C, G, or T


Found at i:2998 original size:50 final size:50

Alignment explanation


    Indices: 2917--3022  Score: 169
    Period size: 50  Copynumber: 2.1  Consensus size: 50

       2907 TCCCCTTTAG

                                      *                       
       2917 AATCCCTGAAAAAAGTTCCTTAATCAGGCTCCAAATAACCTAATTTCCAA
          1 AATCCCTGAAAAAAGTTCCTTAATCAAGCTCCAAATAACCTAATTTCCAA

                                   * *                         
       2967 AATCCCTGAAAAAAG-TCTCTTATTTAAGCTCCAAATAACCTAATTTCCAA
          1 AATCCCTGAAAAAAGTTC-CTTAATCAAGCTCCAAATAACCTAATTTCCAA

                  
       3017 AATCCC
          1 AATCCC

       3023 GTAAACTTTT


Statistics
Matches: 52,  Mismatches: 3, Indels: 2
        0.91            0.05        0.04

Matches are distributed among these distances:
  49    2  0.04
  50   50  0.96

ACGTcount: A:0.40, C:0.26, G:0.07, T:0.27


Consensus pattern (50 bp):   
AATCCCTGAAAAAAGTTCCTTAATCAAGCTCCAAATAACCTAATTTCCAA
Done.