Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400452.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3649.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.28

Warning! 508 characters in sequence are not A, C, G, or T


Found at i:1159 original size:18 final size:18

Alignment explanation


    Indices: 1138--1182  Score: 56
    Period size: 18  Copynumber: 2.5  Consensus size: 18

       1128 TCATATAATT

                               
       1138 AATTA-AATTAATTAATAA
          1 AATTATAATT-ATTAATAA

                            * 
       1156 AATTATAATTATTAATTA
          1 AATTATAATTATTAATAA

                *    
       1174 AATTGTAAT
          1 AATTATAAT

       1183 ATCTTTTAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  18   20  0.83
  19    4  0.17

ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44


Consensus pattern (18 bp):   
AATTATAATTATTAATAA

Found at i:1282 original size:17 final size:17

Alignment explanation


    Indices: 1256--1296  Score: 57
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       1246 ATACATACAC

                        *    
       1256 TAAA-ATACTTTTAATA
          1 TAAATATACTTTAAATA

              *              
       1272 TATATATACTTTAAATA
          1 TAAATATACTTTAAATA

                    
       1289 TAAATATA
          1 TAAATATA

       1297 TTTCCTTTTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  16    3  0.14
  17   18  0.86

ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44


Consensus pattern (17 bp):   
TAAATATACTTTAAATA

Found at i:1346 original size:15 final size:17

Alignment explanation


    Indices: 1316--1348  Score: 52
    Period size: 15  Copynumber: 2.1  Consensus size: 17

       1306 TATTTTGTGT

                             
       1316 TAACATTACAAAAATTA
          1 TAACATTACAAAAATTA

                             
       1333 TAAC-TTAC-AAAATTA
          1 TAACATTACAAAAATTA

             
       1348 T
          1 T

       1349 TCATTATAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    8  0.50
  16    4  0.25
  17    4  0.25

ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33


Consensus pattern (17 bp):   
TAACATTACAAAAATTA
Done.