Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_299.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1083202
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.33
Warning! 21736 characters in sequence are not A, C, G, or T
File 2 of 4
Found at i:223269 original size:510 final size:504
Alignment explanation
Indices: 221683--223610 Score: 1419
Period size: 510 Copynumber: 3.8 Consensus size: 504
221673 ATAAAATTCA
** * * * * * *
221683 ATTTAAAATCATTTGCAAAATTATAAAACCACTTAAAGTGAGTAACAAGGCATTTAAAGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGCCTTTTGAAGGCATGA
* * * * * * * * * * * *** * *
221748 GTGATTCTTAATGGACTTTTCTTATCAAAGGATGGCTTTCACTTCACATTTCC-CAA-TGCAAAC
66 GTGACTATAAAAGAACTTCTCTTGTCAATGGATAGCTATCACCTCATGCTTCCTAAAGTACAAAC
* *
221811 AATAAATTATGATATGTTTAAATGAAAAATT-AAAAAAATACAATTTAAAATTATTTGTAAGATT
131 AATAAATTATGATATGTTT-AAT-AAAAATTAAAAAAAAT-CAATTTAAAATCATTTATAAGATT
** ** * * * *
221875 ATAAATGCAATTAAAGTGAACAACTTGGCTTTTGAAGGCATGAGTGAATATAAATAGACTTTCCT
193 ATAAAACCTTTTAAAGTGAATAACTAGGCTTTTGAAGGCATGAGTGAATATAAATAGATTTTTCT
* * *
221940 TGTCAATTGATAGCTTTCACTACATGTTTCCTGATGCAAATATCAAATTATGATATTTTTAACCA
258 TGTCAATTGATAGCTTTCACTTCATGTTTCCTAATGCAAACATCAAATTATGATA-TTTTAA-CA
* * *
222005 AAA-TGAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAATCACTTAAAGCGAGTAACAA
321 AAATTGAAAAAAATTCAATT-AAAATCATTTATAAAATTATAAAACCACTTAAAGCGAGCAACAA
* * * * *
222069 GGCTTTTCGAAAGAATTAGT-G-AATGTAAATTGACTTTTCTTG-TCAATGAATTTCTTTCTCCT
385 GGCTTTT-GAAAGAATCAGTGGCAA--TAAATAGACTTTTATTGCT-AATGAATTACTTT-TCTT
* * * * *
222131 CATGTGTCCCAATGCAAACATACAATTATGATCTGTTTTAACTAGAAATGAAACAAATTTTG
445 CATGTCTTCC-ATGCAAACATCCAATTATGATATGTTTTAACTAGAAATGAAA-AAAATTTG
* * * *
222193 ATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTGAGTAA-TTGACCTTTCGAAGGTATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAG-CCTTTTGAAGGCATG
* * * * *
222257 AGTGATTATAAATGAACTTCTCTTGTCAATGGATAGCTATCGCTTCATGTTTCCTAAAGTAC--A
65 AGTGACTATAAAAGAACTTCTCTTGTCAATGGATAGCTATCACCTCATGCTTCCTAAAGTACAAA
* * * * * *
222320 CAACAAATTCTGATTTGTTTTAATCACAATTGAAAAAAAATCAAGTTAAAATCATTTATAAGATT
130 CAATAAATTATGATATG-TTTAATAAAAATT-AAAAAAAATCAATTTAAAATCATTTATAAGATT
* * ** * * *
222385 ATAAAACTTTTTACAGTGGGTAACGAGGCTTTTGAAGGCATGAGT-AACTATAAATAGATTATTG
193 ATAAAACCTTTTAAAGTGAATAACTAGGCTTTTGAAGGCATGAGTGAA-TATAAATAGATTTTTC
* * * ** * * * *
222449 TTATCAATTGATGGCTTTCACCTCACATTT-CTAATGCAAACAACAAATTAAGAATTGTTTTTAT
257 TTGTCAATTGATAGCTTTCACTTCATGTTTCCTAATGCAAACATCAAATTATG-A-T-ATTTTAA
* * * * *
222513 CAAAATTGAAAATAAAATCAATTTAAAGTCATTTATAAGATTATAAAACCATTTAAAGTGAGCAA
319 CAAAATTGAAAA-AAATTCAA-TTAAAATCATTTATAAAATTATAAAACCACTTAAAGCGAGCAA
* * * * * * * *
222578 CCAGGCTTTTGAAGGCATGAGTGACTATAAATGGAGTTTTCATAT-C-AAT-AGATTACTTTTGC
382 CAAGGCTTTTGAAAGAATCAGTGGCAATAAATAGACTTTT-AT-TGCTAATGA-ATTACTTTT-C
** * * * * * * *
222640 TTCACAATCTT-GATACAAACAACAAATTATGATATGTTTTAACTATAAATAAAAAAAATCTAG
443 TTCA-TGTCTTCCATGCAAACATCCAATTATGATATGTTTTAACTAGAAATGAAAAAAAT-TTG
* * * *** *
222703 ATTTAAAATTATTTATCAGATTATAAAATCATTTAAACCAAGTAACAAGCCTTTTGAAGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGCCTTTTGAAGGCATGA
* * * **
222768 GTGACTATAAAAGAACTTTTCTTGTCAATTGATGGC-ATTCACCTCATGCTT-CTTGA-TACAAA
66 GTGACTATAAAAGAACTTCTCTTGTCAATGGATAGCTA-TCACCTCATGCTTCCTAAAGTACAAA
*
222830 CAATAAATTATGATATGTTTGAACTAAAAATTAAAAAAAATCAATTTAAAATCATTTATAGGATT
130 CAATAAATTATGATATGTTT-AA-TAAAAATTAAAAAAAATCAATTTAAAATCATTTATAAGATT
* * * ** *
222895 ATAAAACCTTTTAAAGTAAATGACTAGGCTTTCGAAGATATGAGTGATTATAAATAGATTTTTCT
193 ATAAAACCTTTTAAAGTGAATAACTAGGCTTTTGAAGGCATGAGTGAATATAAATAGATTTTTCT
* * * * * *
222960 TGTCCATGGATTGTTTTTACTTCATGTTTCCTAATGCAAACATCAAATTATGATCAATTTAACAA
258 TGTCAATTGATAGCTTTCACTTCATGTTTCCTAATGCAAACATCAAATTATGAT-ATTTTAAC-A
** * *
223025 AAATTGAAAAAAATTCAATCTAAAATCAACTATAAAATTTTAAAACCACTTAAAGCGAG-AAGTA
321 AAATTGAAAAAAATTCAAT-TAAAATCATTTATAAAATTATAAAACCACTTAAAGCGAGCAA-CA
* * ** *
223089 AGTCTTTTGAAAGAATCAGTGGCAATAAATAGACTTTTGTTGCTAATGAATGGCTTTTATTTCAT
384 AGGCTTTTGAAAGAATCAGTGGCAATAAATAGACTTTTATTGCTAATGAATTACTTTT-CTTCAT
* * *
223154 GTTTTCCATTGCAAACATCCAATTATGATATATTTTAACTAGAAGTGAAAAAACATTTG
448 GTCTTCCA-TGCAAACATCCAATTATGATATGTTTTAACTAGAAATGAAAAAA-ATTTG
* * * * * *
223213 ACTTAAAATCATTTATAAGATTATAAAAGCATTTAAGGTGAGCAACTAGGCTTTTGAAGACATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGCCTTTTGAAGGCATGA
* * * * * *** * * ** * **
223278 GTGACTATAAATGGAGTTTTCATGTCAACAAATTGCTTTTGCTTCA--CATT-CTCGA-TACAAA
66 GTGACTATAAAAGAACTTCTCTTGTCAATGGATAGCTATCACCTCATGC-TTCCTAAAGTACAAA
* * ** * * * * *** *
223339 TAACAAATTATGATCCGTGGTAACTAGAAATGAAACAAAATTTTTTTTGAAATCATTTATAAGAT
130 CAATAAATTATGATATGT-TTAA-TAAAAATTAAA-AAAAATCAATTTAAAATCATTTATAAGAT
* ** * * * * * * *
223404 TATAAAACCATTTAAACCGACTAACTAGGCTTTCGAAGTCATGGGTGACTATAAATATACTTTTC
192 TATAAAACCTTTTAAAGTGAATAACTAGGCTTTTGAAGGCATGAGTGAATATAAATAGATTTTTC
** * * * * * *
223469 TTGTCAA-TGCA-AGGCTTTTGCTTCATATTT-CTCAAAGAAAATAACAAATTATGATCTGTTTT
257 TTGTCAATTG-ATA-GCTTTCACTTCATGTTTCCT-AATGCAAACATCAAATTATGA--TATTTT
* * * * **
223531 AACAAAAAAAT-AAAACAATTCAACTTAAAATCATTTATAAGATTATAAAATCTTTTAAAGCGAG
317 AAC--AAAATTGAAAAAAATTCAA-TTAAAATCATTTATAAAATTATAAAACCACTTAAAGCGAG
* *
223595 CGACGAGGCTTTTGAA
379 CAACAAGGCTTTTGAA
223611 TACATAAGTG
Statistics
Matches: 1108, Mismatches: 259, Indels: 101
0.75 0.18 0.07
Matches are distributed among these distances:
507 1 0.00
508 12 0.01
509 168 0.15
510 711 0.64
511 148 0.13
512 64 0.06
513 4 0.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (504 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGCCTTTTGAAGGCATGA
GTGACTATAAAAGAACTTCTCTTGTCAATGGATAGCTATCACCTCATGCTTCCTAAAGTACAAAC
AATAAATTATGATATGTTTAATAAAAATTAAAAAAAATCAATTTAAAATCATTTATAAGATTATA
AAACCTTTTAAAGTGAATAACTAGGCTTTTGAAGGCATGAGTGAATATAAATAGATTTTTCTTGT
CAATTGATAGCTTTCACTTCATGTTTCCTAATGCAAACATCAAATTATGATATTTTAACAAAATT
GAAAAAAATTCAATTAAAATCATTTATAAAATTATAAAACCACTTAAAGCGAGCAACAAGGCTTT
TGAAAGAATCAGTGGCAATAAATAGACTTTTATTGCTAATGAATTACTTTTCTTCATGTCTTCCA
TGCAAACATCCAATTATGATATGTTTTAACTAGAAATGAAAAAAATTTG
Found at i:224755 original size:170 final size:169
Alignment explanation
Indices: 223836--226993 Score: 1514
Period size: 171 Copynumber: 18.7 Consensus size: 169
223826 CATTTCATGT
* * * ** * ** * *
223836 TTTAAAATCATTTATAGGATTATAAAACCATTTAAAGTAACTAACTCGACTTTTGAACGTATGAG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* * ** ** * * * * * *
223901 TGACTAGAAATGGA-GTTTCACGTCAATTCATGGCTTTTGCTTCACGCTTCCTTAA-GTAAATAA
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATG-TTTCTCAATGCAAA-CA
* * **
223964 AAAATTATGATATGTTTTAATAAAAAAT-AAAAAAATTCAA
129 AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* * * * ** * * * * * *
224004 GTTT-GAATCATTTATAAAATCATAAAACCTTTTAAAGTGAGTGACGAGGCATTC-AAGACATAA
1 -TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
* * * * * *
224067 GCGGCTATAAATGGACTTTTCTT-TCAATGGATTGCTTTTGCTTCACGTTTC-CTAATACAAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAACA
* * * *
224130 TCAAATTATGATC-ATTTTAACCAAAACT-AAAAAAAATCTAA
129 -AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTC-AA
* * * * * * **
224171 TTTAAAATCATTCATAA-AGTTTTAAAA-CACTTAAAGCAAGAAATAAGGCTTTTGAAGGCATGA
1 TTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
* * ** * **
224234 GTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGTTTCCCGTTGTCT-ATTATAAACA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTT-TCTCAATGCAAACA
** * * * * *
224297 TCCAATTATGATATATTTTAACTAGAAATGAAAAAATATTTCTA
129 -AAAATTATGATCTCTTTTAACCAAAAATGAAAAAA-A-TTCAA
* * * * ** *
224341 CTTAAAATCATATACAAGATTATAAAACCACTTAAAGTGAGTAACTAGCCTTTCACAA-GCATGA
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCA-AAGGCATGA
* * * * ** ** ** *
224405 GTGACTATAAATGTAC-TTTCTTAGTCACTGGATTGCTTTTGCTTCACATTTCTTGACACAAATG
65 GTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAA-C
** * * *
224469 TCAAATTATTAT-TTTTTTAATCAAAAATGAAAAGCAAATTCAA
128 AAAAATTATGATCTCTTTTAACCAAAAATGAAAA--AAATTCAA
* * * * ** *** * * **
224512 TTTCAACTCATTTATAA-AGTTATAAAACCACTTATAGTGAGTAGTGAGCTTTTCGAAGTAATGA
1 TTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
* * * * *
224576 GTGACTATAAATGGACTTTTCTTGTCAATGGGTGGGTTTTGCTTAATGTTTCTCAATGCAAGCAA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAA
224641 AAATTATGATCTCTTTTAACCAAAAATGAAGAAAAATTCAA
130 AAATTATGATCTCTTTTAACCAAAAATGAA-AAAAATTCAA
* * * * * *
224682 TTTAAAATAATTTATAAGATTATAAAAACATTTTAGGCGAGTAACAAGCCTTTCAAAGGTATGAG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* *** *** ** * *
224747 TAACTATAAATGGAC-TTTCTTGGTCAATGGATTAATTTTTTTTCACATTTCTCAATACAAAGAT
66 TGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA-
** * * *
224811 CCAATTATGATCT-TTTGAATCAAAAATGAAAAGAAAAAGTTTAA
129 AAAATTATGATCTCTTTTAACCAAAAATG--AA-AAAAA-TTCAA
* * ** * *
224855 TTTAAAATCACTTATAA-AGTTATAAAACCACTTAAAGTTAGTAAGAAGGCTTTCAAAGGCATGA
1 TTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
* ** * *
224919 GTGACTACAAATGGA-TCTTTCTTGTCAATGGATCCCTTTCGCTTCATGTTTCCCAATGCAAATA
65 GTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
* *
224983 ACAAATTATGATACGC-TTTAACCAAAAATGAAAAAAATACAA
129 A-AAATTATGAT-CTCTTTTAACCAAAAATGAAAAAAATTCAA
* * ** ** * * *
225025 TTTACAATCATTTAT-AGTATTATAAATCCATTTAAAGCAAACAACTTGGCTTTTGAAA-GCATT
1 TTTAAAATCATTTATAAG-ATTATAAAACCATTTAAAGCAAGTAAC-AAGCCTTTCAAAGGCATG
* * * *
225088 AGTGACTATAAATAGACTTTTCTTATCAATTGATGGCTTTCACTTCACAT-TTTC-CAATGCAAA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTTCTCAATGCAAA
* * *
225151 CATCAAACTATGA--TCTTTTAACCAAAAATGAAAAACATTCAA
127 CA-AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* * * ** *
225193 TTCAAAATCATTTATAA-AGTTATAAAA-CAGCTTAAAGCAAGTAACAAAGCTTTTTGAAGGAAC
1 TTTAAAATCATTTATAAGA-TTATAAAACCA-TTTAAAGCAAGTAAC-AAGCCTTTCAAAGGCA-
* *** **** ** * * *
225256 TG-GTGACTATAAATTGACTTTTCTAACCAGCAAATTTCTTTTGCTCCATGTTTCCCAATGCAAA
62 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAA
* * * * * *
225320 -AATCGAATTATGATCTGTTTTAACTAGAAATGAAACAAATTTCGA
127 CAA--AAATTATGATCTCTTTTAACCAAAAATGAAA-AAAATTCAA
* * * *
225365 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAACATGTAACTAGCCTTTCAAAGGCATAAG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* * * * * * *
225430 TGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTCACTTTACGTTTCTTAAAGGAAACAAT
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAA-
* * * * *
225495 AAATTATGATATGTTTTAACTGAAAATATAAAAAAAATTTAA
130 AAATTATGATCTCTTTTAAC-CAAAA-ATGAAAAAAATTCAA
* * * * * ** * * *
225537 GTT-AAATAATTTATAAGATTATAAATCTATTTAAGAGCGAA-CAACTTGGCTTTCAATGGCATC
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAA-AGC-AAGTAACAAGCCTTTCAAAGGCATG
* * * * * ** * * * *
225600 AGTGACAATAAGTGAACTTTTTTTGTCAATTGAAAGATTTTGTTTCACAT-TTTC-CAATGCAGA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTT--CATGTTTCTCAATGCAAA
* * * * *
225663 TATCAAACTATGATCT-TTTTAACCAAAGATAAAAAAAATTCAA
127 CA-AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* ** * * ** *
225706 TTCAAAATCATTTATAA-AGTTATAAAACCGCTTAAAGCGAGTAACAAGACTTTCTTAGGCATTA
1 TTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
** * * ** * ** * * * *
225770 GTGACTATAAATTAACTTTT-TTCATCAATAGATTACTTTCACAACCTATTTCGCAATGCAAATA
65 GTGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACA
** * * * * ** **
225834 TCCAATTATGATATATTTTAACTAGAAAT-AAAACTACTTTTGA
129 -AAAATTATGATCTCTTTTAACCAAAAATGAAAA--AAATTCAA
* * * * * * * * *
225877 TTTAAAATCACTTATAAAATTATAAAAACATTTAAAGCGAGCAACTAGCATTTCAAATGCATAAG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* * *
225942 TGACTATAAATGAACTTTT-TTGTCAATGGATGGTTTTCGCTTCATGTTTCT-AGTAGCAAACAA
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAT-GCAAACAA
226005 CAAATTATGATC-CATTTTAACTC-AAAATGAAAAACAAATTCAA
130 -AAATTATGATCTC-TTTTAAC-CAAAAATG-AAAA-AAATTCAA
* * * * ** *** * * * * *
226048 TTGAAAATGATTTGTAAGAATATAATTCCATTTAAAGTGTGCAACTAGGCTGTCGAAGGCAT-AG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA-
* * * * *
226112 GTGACTATAAATAGAGTTTT-TATGCCAATGGATTGCTTTCGCTTCACT-TTTCT-AGATACAAA
65 GTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCTTTCGCTTCA-TGTTTCTCA-ATGCAAA
* * *
226174 CATCAAATTATGATCT-TTTTAACAAAAAAT--AAAAAAGTCAA
127 CA-AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* * * * ** * * * **
226215 TTTAAAATTATTTATAA-AGTTATCAAACTACTTAAAATAAGCAACAAGGCTTACGGAGGCATGA
1 TTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
* * * *
226279 GTGAGTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTC-CTAATGCAAGCA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AATGCAAACA
* * * *
226343 ACAAATTATGATATGTTTTAAGCAAAAATG-AAAGAATTCAA
129 A-AAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
** * * * * * *
226384 TCAAAAATCATTTATAAAATTAT-AAACCATTTAAAG-AGAGCAACTAGTCTTTTAAAGGAATGA
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCA-AGTAACAAGCCTTTCAAAGGCATGA
* * * * * * * * *
226447 GTGACTATAAATAGACTTTTCATATTAATGAACT-ACTTTTGCCTCACT-TTTCT-AGATACAAA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCTTTCGCTTCA-TGTTTCTCA-ATGCAAA
* * * *
226509 CATCAACTTATGATCT-TTTTAACCAAAACTGAAAAAAAAATACAA
127 CA-AAAATTATGATCTCTTTTAACCAAAAATG--AAAAAAATTCAA
* * * ** ** * * * * *
226554 TTTACAATCATTTATATAG-TTTTCAAACCACCTAAAGTGAGAAATAAGGCTTTCGAAGGAATGA
1 TTTAAAATCATTTATA-AGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGA
** * *
226618 GTGACTATAAATGGA-TATTTCTTGTCAA-GAGATGGCTTTCATTTTA-GATTT-TCCATTGCAA
65 GTGACTATAAATGGACT-TTTCTTGTCAATG-GATGGCTTTCGCTTCATG-TTTCT-CAATGCAA
*** *
226679 ACATCCGATTATGATCTATTTT-----AAAATG-----------A
126 ACA-AAAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* ** * * * * * *
226708 TTTAAAATCATTTATAAAATTATAAAATTATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATAAG
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* * * * *
226773 TGACTCTAAATAGACTTTTCTTGTCATTGGATGGCTTTTC-CTTCATGTTTC-CTGATGCAAATA
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCTC-AATGCAAACA
* * * * *
226836 ACAAATTATGATCTGTTTTAACTAAAAAAGAAAAAGATTTAA
129 A-AAATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
* * ** * * * * *
226878 TTCAAAATCATTTATAAGATTATAAAACTATTTAAAGTGAGAAACAAGGCTTTCGAAGGCTTGAA
1 TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
* * * *
226943 TGACTACAAATGGACTTTTCTTGTTAATGGATGGCTTTCGTTTCACGTTTC
66 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC
226994 CTGTTACGAA
Statistics
Matches: 2263, Mismatches: 577, Indels: 297
0.72 0.18 0.09
Matches are distributed among these distances:
153 2 0.00
154 105 0.05
155 7 0.00
159 5 0.00
166 54 0.02
167 272 0.12
168 231 0.10
169 188 0.08
170 449 0.20
171 568 0.25
172 238 0.11
173 124 0.05
174 20 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (169 bp):
TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGCCTTTCAAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAATGCAAACAAA
AATTATGATCTCTTTTAACCAAAAATGAAAAAAATTCAA
Found at i:225040 original size:343 final size:338
Alignment explanation
Indices: 223836--226656 Score: 1398
Period size: 339 Copynumber: 8.3 Consensus size: 338
223826 CATTTCATGT
* * * *** * * * *
223836 TTTAAAATCATT-TATAGGATTATAAAACCATTTAAAGTAACTAACTCGACTTTTGAACGTATGA
1 TTTAAAATCATTATA-AAG-TTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGA
* * ** ** * * * * *
223900 GTGACTAGAAATGGAGTTTCACGTCAATTCATGGCTTTTGCTTCACGCTTCCTTAA-GTAAATAA
64 GTGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCC-CAATGCAAACAA
* *** ** * * *
223964 AAAATTATGATATGTTTTAATAAAAAAT-AAAAAAATTCAAGTTT-GAATCATTTATAAAATCAT
128 CAAATTATGATACACTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATAAGATTAT
* ** * * * * * * ***
224027 AAAACCTTTTAAAGTGAGTGACGAGGCATT--CAAGACATAAGCGGCTATAAATGGACTTTTCTT
192 AAAAACACTTAAAGCGAGTAACAAGCCTTTCACAAG-CATGAGTAACTATAAATGGAC-TTTCTT
* * *
224090 -TCAATGGATTGCTTTTGCTTCACGTTTC-CTAATACAAACATCAAATTATGATCATTTTAACCA
255 GTCAATGGATTGCTTTTGCTTCACATTTCTC-AATACAAAGATCAAATTATGATC-TTTTAATCA
* *
224153 AAACT--AAA-AAAAATCTAA
318 AAAATGAAAAGAAAAATTTAA
* * * * *
224171 TTTAAAATCATTCATAAAGTTTTAAAA-CACTTAAAGCAAGAAATAAGGCTTTTGAAGGCATGAG
1 TTTAAAATCATT-ATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGAG
* ** * * ** *
224235 TGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTTGTTTCCCGTTGT-CTATTATAAACATC
65 TGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTTGCTTCATGTT-TCCCAATGCAAACAAC
* * * * * * * * *
224299 CAATTATGATATATTTTAACTAGAAATGAAAAAATATTTCTACTTAAAATCATATACAAGATTAT
129 AAATTATGATACACTTTAACCAAAAATGAAAAAA-A-TTCAATTTAAAATCATTTATAAGATTAT
* * * * *
224364 AAAACCACTTAAAGTGAGTAACTAGCCTTTCACAAGCATGAGTGACTATAAATGTACTTTCTTAG
192 AAAAACACTTAAAGCGAGTAACAAGCCTTTCACAAGCATGAGTAACTATAAATGGACTTTCTT-G
* ** * * *
224429 TCACTGGATTGCTTTTGCTTCACATTTCTTGACACAAATG-TCAAATTATTATTTTTTTAATCAA
256 TCAATGGATTGCTTTTGCTTCACATTTCTCAATACAAA-GATCAAATTATGA-TCTTTTAATCAA
* *
224493 AAATGAAAAG-CAAATTCAA
319 AAATGAAAAGAAAAATTTAA
* * * * * **
224512 TTTCAACTCATTTATAAAGTTATAAAACCACTTATAGTGAGT-AG-TGAGCTTTTCGAAGTAATG
1 TTTAAAATCA-TTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAG-GC-TTTCGAAGGCATG
* * * * *
224575 AGTGACTATAAATGGACTTTTCTTGTCAATGGGTGGGTTTTGCTTAATGTTTCTCAATGCAAGCA
63 AGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACA
* *
224640 A-AAATTATGAT-CTCTTTTAACCAAAAATGAAGAAAAATTCAATTTAAAATAATTTATAAGATT
127 ACAAATTATGATACAC-TTTAACCAAAAATGAA-AAAAATTCAATTTAAAATCATTTATAAGATT
* * * *
224703 ATAAAAACATTTTAGGCGAGTAACAAGCCTTTCA-AAGGTATGAGTAACTATAAATGGACTTTCT
190 ATAAAAACACTTAAAGCGAGTAACAAGCCTTTCACAA-GCATGAGTAACTATAAATGGACTTTCT
** ** *
224767 TGGTCAATGGATTAATTTTTTTTCACATTTCTCAATACAAAGATCCAATTATGATCTTTTGAATC
254 T-GTCAATGGATTGCTTTTGCTTCACATTTCTCAATACAAAGATCAAATTATGATCTTTT-AATC
224832 AAAAATGAAAAGAAAAAGTTTAA
317 AAAAATGAAAAGAAAAA-TTTAA
* *
224855 TTTAAAATCACTTATAAAGTTATAAAACCACTTAAAGTTAGTAAGAAGGCTTTCAAAGGCATGAG
1 TTTAAAATCA-TTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGAG
* ** * *
224920 TGACTACAAATGGATCTTTCTTGTCAATGGATCCCTTTCGCTTCATGTTTCCCAATGCAAATAAC
65 TGACTATAAATGGA-CTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACAAC
* * *
224985 AAATTATGATACGCTTTAACCAAAAATGAAAAAAATACAATTTACAATCATTTAT-AGTATTATA
129 AAATTATGATACACTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAG-ATTATA
** * * ** ** * * * * * *
225049 AATCCATTTAAAGCAAACAACTTGGCTTTTGA-AAGCATTAGTGACTATAAATAGACTTTTCTTA
193 AAAACACTTAAAGCGAGTAAC-AAGCCTTTCACAAGCATGAGTAACTATAAATGGAC-TTTCTTG
* * ** * * * *
225113 TCAATTGATGGCTTTCACTTCACATTT-TCCAATGCAAACATCAAACTATGATCTTTTAACCAAA
256 TCAATGGATTGCTTTTGCTTCACATTTCT-CAATACAAAGATCAAATTATGATCTTTTAATCAAA
* *
225177 AATG--AA-AAACATTCAA
320 AATGAAAAGAAAAATTTAA
* * * * * *
225193 TTCAAAATCATTTATAAAGTTATAAAA-CAGCTTAAAGCAAGTAACAAAGCTTTTTGAAGGAACT
1 TTTAAAATCA-TTATAAAGTTATAAAACCA-CTTAAAGTAAGTAAGAAGGC-TTTCGAAGGCA-T
* *** **** ** *
225257 G-GTGACTATAAATTGACTTTTCTAACCAGCAAATTTCTTTTGCTCCATGTTTCCCAATGCAAA-
62 GAGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAAC
* ** * * * *
225320 AATCGAATTATGAT-CTGTTTTAACTAGAAATGAAACAAATTTCGATTTAAAATCATTTATAAGA
126 AA-CAAATTATGATAC-ACTTTAACCAAAAATGAAA-AAAATTCAATTTAAAATCATTTATAAGA
* * * * * *
225384 TTATAAAACCATTTAAAAC-ATGTAACTAGCCTTTCA-AAGGCATAAGTGACTATAAATGGACTT
188 TTATAAAAACACTTAAAGCGA-GTAACAAGCCTTTCACAA-GCATGAGTAACTATAAATGGAC-T
* * ** * * * * * *
225447 TTCTTGTCAATAGATGGCTTTCACTTTACGTTTCTTAA-AGGAAACAAT-AAATTATGATATGTT
250 TTCTTGTCAATGGATTGCTTTTGCTTCACATTTCTCAATA-CAAA-GATCAAATTATG--ATCTT
*
225510 TTAA-CTGAAAAT-ATAAA-AAAAATTTAA
311 TTAATC-AAAAATGA-AAAGAAAAATTTAA
* * * * * * * ***
225537 GTT-AAATAATT-TATAAGATTATAAATCTATTTAAGAGCGAA-CAACTTGGCTTTC-AATGGCA
1 TTTAAAATCATTATA-AAG-TTATAAAACCACTTAA-AG-TAAGTAAGAAGGCTTTCGAA-GGCA
* * * * * * ** * * ** * *
225598 TCAGTGACAATAAGTGAACTTTTTTTGTCAATTGAAAGATTTTGTTTCACATTTTCCAATGCAGA
61 TGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAA
* * * ** * * *
225663 TATCAAACTATGAT-CTTTTTAACCAAAGATAAAAAAAATTCAATTCAAAATCATTTATAA-AGT
125 CAACAAATTATGATACACTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGA-T
* * * ** * * * ** *
225726 TATAAAACCGCTTAAAGCGAGTAACAAGACTTTCTTAGGCATTAGTGACTATAAATTAACTTTTT
189 TATAAAAACACTTAAAGCGAGTAACAAGCCTTTCACAAGCATGAGTAACTATAAATGGACTTTCT
* * * ** ** * * * * *
225791 TCATCAATAGATTACTTTCACAAC-CTATTTCGCAATGCAAATATCCAATTATGATATATTTTAA
254 T-GTCAATGGATTGCTTTTGCTTCAC-ATTTCTCAATACAAAGATCAAATTATG--ATCTTTTAA
* ** ** *
225855 -CTAGAAAT-AAAA-CTACTTTTGA
315 TC-AAAAATGAAAAGAAAAATTTAA
* * * ** * ** * * *
225877 TTTAAAATCACTTATAAAATTATAAAAACATTTAAAGCGAGCAACTA-GCATTTCAAATGCATAA
1 TTTAAAATCA-TTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGC-TTTCGAAGGCATGA
* * * *
225941 GTGACTATAAATGAACTTTTTTGTCAATGGATGG-TTTTCGCTTCATGTTT-CTAGTAGCAAACA
64 GTGACTATAAATGGACTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCCCAAT-GCAAACA
* * * * * *
226004 ACAAATTATGATCCATTTTAACTC-AAAATGAAAAACAAATTCAATTGAAAATGATTTGTAAGAA
127 ACAAATTATGATACACTTTAAC-CAAAAATG-AAAA-AAATTCAATTTAAAATCATTTATAAGAT
*** * * * * * * * * * * *
226068 TATAATTCCATTTAAAGTGTGCAACTAGGCTGTCGA-AGGCAT-AGGTGACTATAAATAGAGTTT
189 TATAAAAACACTTAAAGCGAGTAACAAGCCTTTC-ACAAGCATGA-GTAACTATAAATGGACTTT
* * * * *
226131 TTATGCCAATGGATTGCTTTCGCTTCACTTTTCT-AGATACAAACATCAAATTATGATCTTTTTA
252 CT-TGTCAATGGATTGCTTTTGCTTCACATTTCTCA-ATACAAAGATCAAATTATGATC-TTTTA
* * *
226195 A-C-AAAA--AATA-AAAAAGTCAA
314 ATCAAAAATGAAAAGAAAAATTTAA
* * * * * * * *
226215 TTTAAAATTATTTATAAAGTTATCAAACTACTTAAAATAAGCAACAAGGCTTACGGAGGCATGAG
1 TTTAAAATCA-TTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGAG
* * ** * *
226280 TGAGTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTAATGCAAGCAAC
65 TGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACAAC
*** * * ** *
226345 AAATTATGATATGTTTTAAGCAAAAATG-AAAGAATTCAATCAAAAATCATTTATAAAATTAT-A
129 AAATTATGATACACTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTATAA
* * * * * * * * * * * *
226408 AACCATTTAAAGAGAGCAACTAGTCTTTTA-AAGGAATGAGTGACTATAAATAGACTTTTCATAT
194 AAACACTTAAAGCGAGTAACAAGCCTTTCACAA-GCATGAGTAACTATAAATGGAC-TTTCTTGT
* * * * * * * * *
226472 TAATGAACTACTTTTGCCTCACTTTTCT-AGATACAAACATCAACTTATGATCTTTTTAACCAAA
257 CAATGGATTGCTTTTGCTTCACATTTCTCA-ATACAAAGATCAAATTATGATC-TTTTAATCAAA
* **
226536 ACTGAAAA-AAAAATACAA
320 AATGAAAAGAAAAATTTAA
* * * * * * * * *
226554 TTTACAATCATTTATATAGTTTTCAAACCACCTAAAGTGAGAAATAAGGCTTTCGAAGGAATGAG
1 TTTAAAATCA-TTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGAG
*
226619 TGACTATAAATGGATATTTCTTGTCAA-GAGATGGCTTT
65 TGACTATAAATGGA-CTTTCTTGTCAATG-GATGGCTTT
226657 CATTTTAGAT
Statistics
Matches: 1933, Mismatches: 446, Indels: 210
0.75 0.17 0.08
Matches are distributed among these distances:
333 2 0.00
334 96 0.05
335 120 0.06
336 34 0.02
337 58 0.03
338 141 0.07
339 351 0.18
340 188 0.10
341 324 0.17
342 226 0.12
343 323 0.17
344 65 0.03
345 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (338 bp):
TTTAAAATCATTATAAAGTTATAAAACCACTTAAAGTAAGTAAGAAGGCTTTCGAAGGCATGAGT
GACTATAAATGGACTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACAACAA
ATTATGATACACTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAA
ACACTTAAAGCGAGTAACAAGCCTTTCACAAGCATGAGTAACTATAAATGGACTTTCTTGTCAAT
GGATTGCTTTTGCTTCACATTTCTCAATACAAAGATCAAATTATGATCTTTTAATCAAAAATGAA
AAGAAAAATTTAA
Found at i:225649 original size:512 final size:504
Alignment explanation
Indices: 224854--226250 Score: 1456
Period size: 512 Copynumber: 2.7 Consensus size: 504
224844 AAAAAGTTTA
* ** ** * *
224854 ATTTAAAATCACTTATAAAGTTATAAAACCACTT-AAAGTTAGTAAGAAGGCTTTCAAAGGCATG
1 ATTTAAAATCACTTATAAA-TTATAAAACCATTTAAAACAT-GTAACTAGCCTTTCAAAGGCATA
* ** * * *
224918 AGTGACTACAAATGGA-TCTTTCTTGTCAATGGATCCCTTTCGCTTCATGTTTCCCAATGCAAAT
64 AGTGACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CTAAAGCAAAC
* * * *
224982 AACAAATTATGATACGCTTTAAC-CAAAA-ATGAAAAAAATACAATTTACAATCATTTAT-AGTA
127 AACAAATTATGATACGTTTTAACTCAAAATATAAAAAAAATTCAA-TTA-AATAATTTATAAG-A
* * *
225044 TTATAAATCCATTTAAAGCAAACAACTTGGCTTTTGAAAGCATTAGTGACTATAAATAGACTTTT
189 TTATAAATCCATTTAAAGCGAACAACTTGGC-TTTCAAGGCA-TAGTGACTATAAATAGACTTTT
* * * *
225109 CTTATCAATTGATGGCTTTCACTTCACATTTTCCAATGCAAACATCAAACTATGATC-TTTTAAC
252 TTTGTCAATTGATAGCTTTCGCTTCACATTTTCCAATGCAAACATCAAACTATGATCTTTTTAAC
225173 CAAAAATGAAAAACATTCAATTCAAAATCATTTATAAAGTTATAAAACAGCTTAAAGCAAGTAAC
317 CAAAAAT-AAAAA-ATTCAATTCAAAATCATTTATAAAGTTATAAAACAGCTTAAAGCAAGTAAC
* * * * **
225238 AA-AGCTTT-TTGAAGGAACTGGTGACTATAAATTGACTTTTCTAACCAGCAAATTTCTTTTGC-
380 AAGA-CTTTCTT--AGGAACTAGTGACTATAAATTAACTTTTCTAACCAACAAATTACTTTCACA
* * * * * *
225300 TCCATGTTTCCCAATGCAAAAATCGAATTATGATCTGTTTTAACTAGAAATGAAACAAATTTCG
442 ACC-TATTTCCCAATGCAAAAATCCAATTATGATATATTTTAACTAGAAATAAAACAAATTTCG
*
225364 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAACATGTAACTAGCCTTTCAAAGGCATAA
1 ATTTAAAATCACTTATAA-ATTATAAAACCATTTAAAACATGTAACTAGCCTTTCAAAGGCATAA
* * * * *
225429 GTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTCACTTTACGTTTCTTAAAGGAAACAA
65 GTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-TAAAGCAAACAA
* * * *
225494 TAAATTATGATATGTTTTAACTGAAAATATAAAAAAAATTTAAGTTAAATAATTTATAAGATTAT
129 CAAATTATGATACGTTTTAACTCAAAATATAAAAAAAATTCAA-TTAAATAATTTATAAGATTAT
* * *
225559 AAATCTATTTAAGAGCGAACAACTTGGCTTTCAATGGCATCAGTGACAATAAGT-GAACTTTTTT
193 AAATCCATTTAA-AGCGAACAACTTGGCTTTCAA-GGCAT-AGTGACTATAAATAG-ACTTTTTT
* * * * * *
225623 TGTCAATTGAAAGATTTTGTTTCACATTTTCCAATGCAGATATCAAACTATGATCTTTTTAACCA
254 TGTCAATTGATAGCTTTCGCTTCACATTTTCCAATGCAAACATCAAACTATGATCTTTTTAACCA
* * *
225688 AAGATAAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCGCTTAAAGCGAGTAACAA
319 AA-A-ATAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACAGCTTAAAGCAAGTAACAA
* * * * * * *
225753 GACTTTCTTAGGCATTAGTGACTATAAATTAACTTTTTTCATCAATAGATTACTTTCACAACCTA
382 GACTTTCTTAGGAACTAGTGACTATAAATTAACTTTTCTAACCAACAAATTACTTTCACAACCTA
* * * * *
225818 TTTCGCAATGCAAATATCCAATTATGATATATTTTAACTAGAAATAAAACTACTTTTG
447 TTTCCCAATGCAAAAATCCAATTATGATATATTTTAACTAGAAATAAAACAAATTTCG
* * * * *
225876 ATTTAAAATCACTTATAAAATTATAAAAACATTTAAAGCGA-GCAACTAGCATTTCAAATGCATA
1 ATTTAAAATCACTTAT-AAATTATAAAACCATTTAAAAC-ATGTAACTAGCCTTTCAAAGGCATA
* * *
225940 AGTGACTATAAATGAACTTTT-TTGTCAATGGATGGTTTTCGCTTCATGTTTCTAGTAGCAAACA
64 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTA-AAGCAAACA
* * * * * *
226004 ACAAATTATGATCCATTTTAACTCAAAATGA-AAAACAAATTCAATTGAAAATGATTTGTAAGAA
128 ACAAATTATGATACGTTTTAACTCAAAAT-ATAAAAAAAATTCAATT--AAATAATTTATAAGAT
* * ** * * *
226068 TATAATTCCATTTAAAGTGTGCAACTAGGCTGTCGAAGGCATAGGTGACTATAAATAGAGTTTTT
190 TATAAATCCATTTAAAGCGAACAACTTGGCTTTC-AAGGCATA-GTGACTATAAATAGACTTTTT
* * * * * * *
226133 ATGCCAATGGATTGCTTTCGCTTCAC-TTTTCTAGATACAAACATCAAATTATGATCTTTTTAAC
253 TTGTCAATTGATAGCTTTCGCTTCACATTTTCCA-ATGCAAACATCAAACTATGATCTTTTTAAC
* * * * *
226197 AAAAAATAAAAAAGTCAATTTAAAATTATTTATAAAGTTATCAAACTA-CTTAAA
317 CAAAAATAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAAC-AGCTTAAA
226251 ATAAGCAACA
Statistics
Matches: 734, Mismatches: 125, Indels: 57
0.80 0.14 0.06
Matches are distributed among these distances:
509 43 0.06
510 130 0.18
511 192 0.26
512 288 0.39
513 71 0.10
514 9 0.01
515 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (504 bp):
ATTTAAAATCACTTATAAATTATAAAACCATTTAAAACATGTAACTAGCCTTTCAAAGGCATAAG
TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTAAAGCAAACAACA
AATTATGATACGTTTTAACTCAAAATATAAAAAAAATTCAATTAAATAATTTATAAGATTATAAA
TCCATTTAAAGCGAACAACTTGGCTTTCAAGGCATAGTGACTATAAATAGACTTTTTTTGTCAAT
TGATAGCTTTCGCTTCACATTTTCCAATGCAAACATCAAACTATGATCTTTTTAACCAAAAATAA
AAAATTCAATTCAAAATCATTTATAAAGTTATAAAACAGCTTAAAGCAAGTAACAAGACTTTCTT
AGGAACTAGTGACTATAAATTAACTTTTCTAACCAACAAATTACTTTCACAACCTATTTCCCAAT
GCAAAAATCCAATTATGATATATTTTAACTAGAAATAAAACAAATTTCG
Found at i:227015 original size:170 final size:170
Alignment explanation
Indices: 226711--227016 Score: 404
Period size: 170 Copynumber: 1.8 Consensus size: 170
226701 AAAATGATTT
* * *
226711 AAAATCATTTATAAAATTATAAAATTATTTAAAGCGAGTAACTAGGCTTTCGAAGGTATAAGTGA
1 AAAATCATTTATAAAATTATAAAACTATTTAAAGCGAGAAACAAGGCTTTCGAAGGTATAAGTGA
* * * *
226776 CTCTAAATAGACTTTTCTTGTCATTGGATGGCTTTTCCTTCATGTTTCCTGATGCAAATAACAAA
66 CTCTAAATAGACTTTTCTTGTCAATGGATGGCTTTTCCTTCACGTTTCCTGATACAAACAACAAA
226841 TTATGATCTGTTTTAACTAAAAAAGAAAAAGATTTAATTC
131 TTATGATCTGTTTTAACTAAAAAAGAAAAAGATTTAATTC
* *
226881 AAAATCATTTATAAGATTATAAAACTATTTAAAGTGAGAAACAAGGCTTTCGAAGGCT-TGAA-T
1 AAAATCATTTATAAAATTATAAAACTATTTAAAGCGAGAAACAAGGCTTTCGAAGG-TAT-AAGT
* * * * * *
226944 GACTAC-AAATGGACTTTTCTTGTTAATGGATGGC-TTTCGTTTCACGTTTCCTGTTACGAACAT
64 GACT-CTAAATAGACTTTTCTTGTCAATGGATGGCTTTTC-CTTCACGTTTCCTGATACAAACAA
*
227007 CCAATTATGA
127 CAAATTATGA
227017 AAAAAATTTA
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
169 4 0.03
170 108 0.93
171 4 0.03
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (170 bp):
AAAATCATTTATAAAATTATAAAACTATTTAAAGCGAGAAACAAGGCTTTCGAAGGTATAAGTGA
CTCTAAATAGACTTTTCTTGTCAATGGATGGCTTTTCCTTCACGTTTCCTGATACAAACAACAAA
TTATGATCTGTTTTAACTAAAAAAGAAAAAGATTTAATTC
Found at i:227149 original size:100 final size:100
Alignment explanation
Indices: 227001--227187 Score: 356
Period size: 100 Copynumber: 1.9 Consensus size: 100
226991 TTCCTGTTAC
227001 GAACATCCAATTATGAAAAAAATTTAGGTTTAAAGTCATTTATAAGATTGCAAAACCATTTAAAG
1 GAACATCCAATTATGAAAAAAATTTAGGTTTAAAGTCATTTATAAGATTGCAAAACCATTTAAAG
*
227066 TGTATAATAAGGCTTTCGAAGGTGTCTCCCATTAT
66 CGTATAATAAGGCTTTCGAAGGTGTCTCCCATTAT
*
227101 GAACATCCAATTATGAAAAAAATTTAGGTTTAAAGTCATTTATAAGATTGTAAAACCATTTAAAG
1 GAACATCCAATTATGAAAAAAATTTAGGTTTAAAGTCATTTATAAGATTGCAAAACCATTTAAAG
227166 CGTATAATAAGGCTTTCGAAGG
66 CGTATAATAAGGCTTTCGAAGG
227188 CGTGAGTTAC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (100 bp):
GAACATCCAATTATGAAAAAAATTTAGGTTTAAAGTCATTTATAAGATTGCAAAACCATTTAAAG
CGTATAATAAGGCTTTCGAAGGTGTCTCCCATTAT
Found at i:227437 original size:172 final size:169
Alignment explanation
Indices: 227136--227754 Score: 565
Period size: 169 Copynumber: 3.6 Consensus size: 169
227126 AGGTTTAAAG
* * * ** *
227136 TCATTTATAAGATTGTAAAACCATTTAAAGCGTA-TA-ATAAGGCTTTCGAAGGCGTGAGTTACT
1 TCATTTATAAGATTATAAAACTATTTAAAGCG-AGTAGCT-AGGCTTTCGAAGGCAAGAGTGACT
* * * *
227199 ATAAATGGACTTTTCTTATCAATAGATGGCTTTTGCTCCATGTTTCCCATTGCAAACAATAAATT
64 ATAAATGGACTTTTCTTATCAATAGAT-GCTTTCGCTTCACGTTT-CCAATGCAAACAATAAATT
*
227264 ATGATCTATTTTAATGAAAAATGAAAAAACAATTCAATTTATTA
127 ATGATCTATTTTAATCAAAAATGAAAAAA-AATTCAATTTATTA
* *
227308 TCATTTATAATATTATAAAACTATTTAAAGCGAG-CGACTAGGCTTTCGAAGGCAAGAGTGACTA
1 TCATTTATAAGATTATAAAACTATTTAAAGCGAGTAG-CTAGGCTTTCGAAGGCAAGAGTGACTA
* * * * * ** *
227372 TAAACGGGCTTTTTTTGTCAATTGATGCCTTTCGCTTCACGTTTGCTGATGCTAAC-ATCAAATT
65 TAAATGGACTTTTCTTATCAATAGATG-CTTTCGCTTCACGTTT-CCAATGCAAACAAT-AAATT
* * * **
227436 ATGATCT-TTTAAATCAAAATTG-AGAAAAATTCAATTTAAAA
127 ATGATCTATTTTAATCAAAAATGAAAAAAAATTCAATTTATTA
* * * * * * *
227477 TCATTTATAA-AGTTATCAAA-TCACTTAAAGCAAGTAGCAAGGCTTAT-GCAGGCATGAGTGAG
1 TCATTTATAAGA-TTATAAAACT-ATTTAAAGCGAGTAGCTAGGCTT-TCGAAGGCAAGAGTGAC
** * * *
227539 TGCAAATGAACTTTTCTTATCAATGGCTAGCTTTCGCTTCACGTTTTCCAATGCAAACAATAAAT
63 TATAAATGGACTTTTCTTATCAATAGAT-GCTTTCGCTTCACG-TTTCCAATGCAAACAATAAAT
* * * * *
227604 TATGATCTATTTTAACCAAATATGAAATAAGATTCAATTTGTTA
126 TATGATCTATTTTAATCAAAAATGAAAAAAAATTCAATTTATTA
* * ** * *
227648 TCATTTATAAGATTTTAAAACTATTTAAAGTGAGTATTTAGGCTTTCGAAGGCAAAAATGACTAT
1 TCATTTATAAGATTATAAAACTATTTAAAGCGAGTAGCTAGGCTTTCGAAGGCAAGAGTGACTAT
* *
227713 AAATGGACTTTTCTTA-CTAATGGATTGCTTTCACTTCACGTT
66 AAATGGACTTTTCTTATC-AATAGA-TGCTTTCGCTTCACGTT
227755 GACAACAAAT
Statistics
Matches: 353, Mismatches: 75, Indels: 40
0.75 0.16 0.09
Matches are distributed among these distances:
168 2 0.01
169 110 0.31
170 27 0.08
171 106 0.30
172 107 0.30
173 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (169 bp):
TCATTTATAAGATTATAAAACTATTTAAAGCGAGTAGCTAGGCTTTCGAAGGCAAGAGTGACTAT
AAATGGACTTTTCTTATCAATAGATGCTTTCGCTTCACGTTTCCAATGCAAACAATAAATTATGA
TCTATTTTAATCAAAAATGAAAAAAAATTCAATTTATTA
Found at i:228216 original size:169 final size:169
Alignment explanation
Indices: 227769--228647 Score: 602
Period size: 170 Copynumber: 5.1 Consensus size: 169
227759 ACAAATGGAT
* * * * * * * *
227769 TTTTCTTGTCAATGGATGGTTTTACTTCACGTTTCTCGATGCAAATAAT-AAATTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTACTTCATGTTT-TCAATACAAA-CATCCAATTATGATCTATT
* * * * * * * * *
227833 TTAACAAAAAATGAAAAAAATTAAAATTAAATTTAAAATCATTTGTAAGATTGTAAGACCATTTA
64 TTAACTAAAAATG---AAAA--AAAGTTCAATTCAAAATCATTTATAAAATTATAAAACCACTTA
* * * * * * * * *
227898 AAACATGCAACTAGCCTTTCAAAGGCATAAGTGACTATAAATGGTC
124 AAGCAAGCAAATAGGCTTTCGAATGCATGAGTGACTATAAATAGAC
* ** * * * * * * *
227944 GTTTGATGTGAATGAATTGCTTTCACTTTA-GTTTTCCCAATACAAAAATCAAATTACGATC--T
1 TTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTT--CAATACAAACATCCAATTATGATCTAT
* * * * * * *
228006 TTTAACCAAAACTCAAAATAAAATTCAATTTAAAATCATTTAGAAAATTATCAAACCACTTAAAG
63 TTTAACTAAAAATGAAAA-AAAGTTCAATTCAAAATCATTTATAAAATTATAAAACCACTTAAAG
* * * *
228071 CAAG-AAATAAGGCTTACGAATGCATAAGTGACTACAAATGGAC
127 CAAGCAAAT-AGGCTTTCGAATGCATGAGTGACTATAAATAGAC
* * *
228114 TTTTCTTGTCAATGGATGACTTTACTTCATGTTTCTCGATACAAACAACCAATTATGATCTATTT
1 TTTTCTTGTCAATGGATGGCTTTACTTCATGTTT-TCAATACAAACATCCAATTATGATCTATTT
* * * ** * * *
228179 TAACTAAAAATGAAACAAA-TTCAATTCAAAGTCATTTATAAGATTATAAAATAATTTAAAACGA
65 TAACTAAAAATGAAAAAAAGTTCAATTCAAAATCATTTATAAAATTATAAAACCACTTAAAGCAA
* * * *
228243 GCAAGTAGGCGTT-GAAAGGAATGAGTGACTATAAAT-GAAC
130 GCAAATAGGCTTTCG-AATGCATGAGTGACTATAAATAG-AC
** * *
228283 TTTTCTTCCCAATGGATTGCTTTCACTTCATGTTTTCTAATACAAACATCAAATTATGATCT-TT
1 TTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTTC-AATACAAACATCCAATTATGATCTATT
* * * * *
228347 TTAACCAAAACT-AAAATGAAATTTCAATTCAAAATCATTTATAAAGTT-TAGAACCACTTAAAG
64 TTAACTAAAAATGAAAA--AAAGTTCAATTCAAAATCATTTATAAAATTATAAAACCACTTAAAG
* *
228410 CAA-AAAATAAGGCTTTCGAA-GACATGAGTGACTATAAATAGAA
127 CAAGCAAAT-AGGCTTTCGAATG-CATGAGTGACTATAAATAGAC
* ** * *
228453 TTTTCTTGTCAATGGATGGCTTT-CGTTTCATGTTTTCCATTGTAAACATCCAATGATGGTCTAT
1 TTTTCTTGTCAATGGATGGCTTTAC--TTCATGTTTT-CAATACAAACATCCAATTATGATCTAT
* * * * * *
228517 TTTAGCTAGAAATGAAAAATAAGGTT-GA-TCTAAAATCATTTATAAGATTATAAAACTATTTAA
63 TTTAACTAAAAATGAAAAA-AA-GTTCAATTC-AAAATCATTTATAAAATTATAAAACCACTTAA
* * * * *
228580 AGCAAGTAACTAGGCTTTTGTATGCATGAGTGCCTATAAATAGAC
125 AGCAAGCAAATAGGCTTTCGAATGCATGAGTGACTATAAATAGAC
228625 TTTTCTTGTCAATGGATGGCTTT
1 TTTTCTTGTCAATGGATGGCTTT
228648 CACACCACGT
Statistics
Matches: 556, Mismatches: 116, Indels: 67
0.75 0.16 0.09
Matches are distributed among these distances:
168 6 0.01
169 124 0.22
170 218 0.39
171 75 0.13
172 72 0.13
173 4 0.01
174 13 0.02
175 23 0.04
176 21 0.04
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (169 bp):
TTTTCTTGTCAATGGATGGCTTTACTTCATGTTTTCAATACAAACATCCAATTATGATCTATTTT
AACTAAAAATGAAAAAAAGTTCAATTCAAAATCATTTATAAAATTATAAAACCACTTAAAGCAAG
CAAATAGGCTTTCGAATGCATGAGTGACTATAAATAGAC
Found at i:228408 original size:339 final size:336
Alignment explanation
Indices: 227754--228650 Score: 914
Period size: 339 Copynumber: 2.6 Consensus size: 336
227744 CACTTCACGT
* * * * * **
227754 TGACAACAAATGGATTTTTCTTGTCAATGGATGGTTTTACTTCACGTTTCTCGATGCAAATAATA
1 TGACTACAAATGGAATTTTCTTGTCAATGGATGGCTTTACTTCATGTTTCTCGATGCAAACAACC
* * * * *
227819 AATTATGATATGTTTTAACAAAAAATGAAAAAAATTAAAATTAAATTTAAAATCATTTGTAAGAT
66 AATTATGATCTATTTTAACTAAAAATG----AAA--AAAATT-AATTCAAAATCATTTATAAGAT
* ** * * * ** * *
227884 TGTAAGACCATTTAAAACATGCAACTAGCCTTTCAAAGGCATAAGTGACTATAAATGGTCGTTTG
124 TATAA-AATATTTAAAACA-GCAACTAGGCTTTGAAAGGCATGAGTGACTATAAATGAACTTTTC
* * * *
227949 ATGTGAATGAATTGCTTTCACTTTAGTTTTCCCAATACAAAAATCAAATTACGATCTTTTAACCA
187 TTGTCAATGGATTGCTTTCACTTCAGTTTTCCCAATACAAAAATCAAATTACGATCTTTTAACCA
* *
228014 AAACTCAAAATAAAATTCAATTTAAAATCATTTAGAAAATTATCAAACCACTTAAAGCAAGAAAT
252 AAACTCAAAATAAAATTCAATTCAAAATCATTTAGAAAATTATCAAACCACTTAAAGCAAAAAAT
228079 AAGGCTTACGAATG-CATAAG
317 AAGGCTTACGAA-GACATAAG
* * *
228099 TGACTACAAATGGACTTTTCTTGTCAATGGATGACTTTACTTCATGTTTCTCGATACAAACAACC
1 TGACTACAAATGGAATTTTCTTGTCAATGGATGGCTTTACTTCATGTTTCTCGATGCAAACAACC
* *
228164 AATTATGATCTATTTTAACTAAAAATGAAACAAATTCAATTCAAAGTCATTTATAAGATTATAAA
66 AATTATGATCTATTTTAACTAAAAATGAAAAAAATT-AATTCAAAATCATTTATAAGATTATAAA
* * * **
228229 ATAATTTAAAACGAGCAAGTAGGCGTTGAAAGGAATGAGTGACTATAAATGAACTTTTCTTCCCA
130 AT-ATTTAAAAC-AGCAACTAGGCTTTGAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCA
* * *
228294 ATGGATTGCTTTCACTTCATGTTTT-CTAATACAAACATCAAATTATGATCTTTTTAACCAAAAC
193 ATGGATTGCTTTCACTTCA-GTTTTCCCAATACAAAAATCAAATTACGATC-TTTTAACCAAAAC
* * *
228358 T-AAAATGAAATTTCAATTCAAAATCATTTATAAAGTT-T-AGAACCACTTAAAGCAAAAAATAA
256 TCAAAAT-AAAATTCAATTCAAAATCATTTAGAAAATTATCA-AACCACTTAAAGCAAAAAATAA
* *
228420 GGCTTTCGAAGACATGAG
319 GGCTTACGAAGACATAAG
* * * *
228438 TGACTATAAATAGAATTTTCTTGTCAATGGATGGCTTT-CGTTTCATGTTT-TCCATTGTAAACA
1 TGACTACAAATGGAATTTTCTTGTCAATGGATGGCTTTAC--TTCATGTTTCTCGA-TGCAAACA
* * * * * *
228501 TCCAATGATGGTCTATTTTAGCTAGAAATGAAAAATAAGGTTGA-TCTAAAATCATTTATAAGAT
63 ACCAATTATGATCTATTTTAACTAAAAATGAAAAA-AA--TTAATTC-AAAATCATTTATAAGAT
* * * * *
228565 TATAAAACTATTTAAAGCAAGTAACTAGGCTTTTG-TATGCATGAGTGCCTATAAAT-AGACTTT
124 TATAAAA-TATTTAAAAC-AGCAACTAGGC-TTTGAAAGGCATGAGTGACTATAAATGA-ACTTT
*
228628 TCTTGTCAATGGATGGCTTTCAC
185 TCTTGTCAATGGATTGCTTTCAC
228651 ACCACGTTTT
Statistics
Matches: 462, Mismatches: 73, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
338 4 0.01
339 191 0.41
340 90 0.19
341 8 0.02
342 83 0.18
343 6 0.01
345 80 0.17
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (336 bp):
TGACTACAAATGGAATTTTCTTGTCAATGGATGGCTTTACTTCATGTTTCTCGATGCAAACAACC
AATTATGATCTATTTTAACTAAAAATGAAAAAAATTAATTCAAAATCATTTATAAGATTATAAAA
TATTTAAAACAGCAACTAGGCTTTGAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATG
GATTGCTTTCACTTCAGTTTTCCCAATACAAAAATCAAATTACGATCTTTTAACCAAAACTCAAA
ATAAAATTCAATTCAAAATCATTTAGAAAATTATCAAACCACTTAAAGCAAAAAATAAGGCTTAC
GAAGACATAAG
Found at i:229442 original size:169 final size:169
Alignment explanation
Indices: 229036--229679 Score: 533
Period size: 169 Copynumber: 3.8 Consensus size: 169
229026 GGCGTGAGTA
* * * * * *
229036 ACTACAAAGGGACTTTTCTTGTCAATAGATTGCTTTTGCTTCATATTTCTTGATGCAAA-AAGCA
1 ACTATAAATGGACTTTTCTTGTCAATAGATTGCTTTTACTTCATGTTTCCTAATGCAAACAA-CA
* * * * * * * *
229100 AATTAAGATTTGTTTTAACCATAAATGAAAAAAAA-AATTTAAAATCATTTATATGATTCTTAAA
65 AATTATGATCTGTTTTAACCAGAAATAAAAAAAAACAATTGAAAATCATTTATATAAGTCATAAA
* * *
229164 CCATTTAAAGCGAGTAATAA-GG-TATTTGAAGGCATGAATG
130 ACATTTAAAGCGAGTAA-AATGGCT-TTCGAAAGCATGAATG
* * * ** * *
229204 ACTATAAATAGACTTTTCTTGTCAACAGATTACTTTTACTTCATGTTT-CTCAATATACACAAAA
1 ACTATAAATGGACTTTTCTTGTCAATAGATTGCTTTTACTTCATGTTTCCT-AATGCAAACAACA
* *
229268 AATTATGATCT-TTCTAA-CAGAAATGAAAAAAAAATTCAATTTAAAATCA-TTATA-AAGTCAT
65 AATTATGATCTGTTTTAACCAGAAAT-AAAAAAAAA--CAATTGAAAATCATTTATATAAGTCAT
* * * *
229329 AAAGACACTTAAAGTGAGTAACATGGCTTTCGAAAGCATGAGTG
127 AAA-ACATTTAAAGCGAGTAAAATGGCTTTCGAAAGCATGAATG
* * * *
229373 ACTATAAATGGACTTTTCTTTTCAATGGATGGCTTTCACTTCATGTTTCCTAATGCAAACAACAA
1 ACTATAAATGGACTTTTCTTGTCAATAGATTGCTTTTACTTCATGTTTCCTAATGCAAACAACAA
* * * *
229438 ATTATGATTTGTTTTAA-C--AAA-AAAAGACAAC--TTGAAAATCA-TT-TATAAGATTATAAA
66 ATTATGATCTGTTTTAACCAGAAATAAAAAAAAACAATTGAAAATCATTTATATAAG-TCATAAA
* * *
229495 ATAATTTAAAGCGA-CAAAATAGGCTTTC-AAAG-ATAAAAATG
130 A-CATTTAAAGCGAGTAAAAT-GGCTTTCGAAAGCAT--GAATG
* * * *
229536 ACTATAAAAGGACTTTTCTTGTCAAT-GAATTGCTTTTGCTTCATGTTTCCTGATGCAAACATCA
1 ACTATAAATGGACTTTTCTTGTCAATAG-ATTGCTTTTACTTCATGTTTCCTAATGCAAACAACA
* * *
229600 AATTATGATCT-TTTTAACCAGAACTAAAAAAAATTTCAATTGAAAATCATTTATA-AAGTCTTA
65 AATTATGATCTGTTTTAACCAGAAATAAAAAAAA--ACAATTGAAAATCATTTATATAAGTCATA
*
229663 AAACCAATTAAAGCGAG
128 AAA-CATTTAAAGCGAG
229680 ACTAAATAGA
Statistics
Matches: 378, Mismatches: 69, Indels: 55
0.75 0.14 0.11
Matches are distributed among these distances:
161 4 0.01
162 30 0.08
163 91 0.24
164 1 0.00
165 2 0.01
166 19 0.05
167 14 0.04
168 67 0.18
169 96 0.25
170 47 0.12
171 5 0.01
172 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (169 bp):
ACTATAAATGGACTTTTCTTGTCAATAGATTGCTTTTACTTCATGTTTCCTAATGCAAACAACAA
ATTATGATCTGTTTTAACCAGAAATAAAAAAAAACAATTGAAAATCATTTATATAAGTCATAAAA
CATTTAAAGCGAGTAAAATGGCTTTCGAAAGCATGAATG
Found at i:233264 original size:40 final size:40
Alignment explanation
Indices: 233220--233298 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
233210 TTGTGAGAGA
* * *
233220 CACCAATCGTGGCATGGTTAAAAACCCCACTAAGGTGAAT
1 CACCAATCGTAGAAAGGTTAAAAACCCCACTAAGGTGAAT
* * *
233260 CACCAATCTTAGAAAGGTTGAAAACCCGACTAAGGTGAA
1 CACCAATCGTAGAAAGGTTAAAAACCCCACTAAGGTGAA
233299 AAATAGCAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (40 bp):
CACCAATCGTAGAAAGGTTAAAAACCCCACTAAGGTGAAT
Found at i:235169 original size:171 final size:168
Alignment explanation
Indices: 234646--235636 Score: 572
Period size: 171 Copynumber: 5.9 Consensus size: 168
234636 TCTAAGTAAT
* ** * *
234646 AACATGAAATTATGATCT-TTTTAACCAAGTATGAAAAAAAATCAATTTAAAATTATTTATAAAG
1 AACATCAAATTATGATCTGTTTTAA-CAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAA-
* * * * *
234710 TTATCAAACCACTTAAAGTGGGTAACAAGGCTTATGAAGGTATAAGTGACTACAAATGAACTTTT
64 TTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTTTT
* *
234775 CTTATCAATAGATGGCTTTTGCTTCA-CTTTTCCTAAT-ACA
129 CTTATCAATGGATGGCTTTTGCTTCATGTTTTCC-AATGA-A
** * * * *
234815 GCCATCAAATTCTAATATGTTTTAACAACAAATGAAAAGTAATTCAATTTAAAATCATTTATAAG
1 AACATCAAATTATGATCTGTTTTAACAA-AAATGAAAA-AAATTCAATTTAAAATCATTTATAA-
* * ** * * * * * *
234880 GTTTTAAAAGTACTTAAAGTGAGAAACAAGGCTTTTAAAGGCATAAGTGTCTATAAATAGACATT
63 ATTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTTT
* * * * * *
234945 TCTTCTCAATGGATGGCTTTTG-TT-TTGCATCTCCCATAGTA
128 TCTTATCAATGGATGGCTTTTGCTTCATG-TTTTCCAAT-GAA
* * * *
234986 AA-ATCCAATTATGATCTATTTTAACTAGAAATGAAGAAAACATTCAATTTAAAATGATTTATAG
1 AACATCAAATTATGATCTGTTTTAAC-AAAAATGAA-AAAA-ATTCAATTTAAAATCATTTATA-
* * ** *
235050 AATTATAAAACCATTTAAAGTAAGTAATTAGGCTTTTGAAGGCATAAGTGACAACAAATGGACTT
62 AATTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTT
* *
235115 TTCATGTCAA-GGATGGCTTTTGCTTCATGTTTTCCAATGAA
127 TTCTTATCAATGGATGGCTTTTGCTTCATGTTTTCCAATGAA
* ** *
235156 AACAACAAATTATGATCTGTTTTAAC---AAT--AAAAAA-TCAATTTAAAATCATTCGTAAGGT
1 AACATCAAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAATTTAAAATCATTTATAA-AT
* * * * ** * * * * *
235215 TATAAGATCATTTAACA-TGAGCAACTAA-GCTTTCAAAAGAATTAGTGACTATAAATTGACTTT
65 TATAAAACCACTTAA-AGTGAGTAAC-AAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTTT
* * ** * *
235278 T-TTAGTGAATGGATTGCTTTCACTTCATGTTTTTCAATGCA
128 TCTTA-TCAATGGATGGCTTTTGCTTCATGTTTTCCAATGAA
* * * * * * * ** * *
235319 AGCATCCAATTATGATATGGTTAAATAGAAATGAAAAAAATTTTGATTAAAAATCACTTATAAGA
1 AACATCAAATTATGATCTGTTTTAACAAAAATGAAAAAAA-TTCAATTTAAAATCATTTATAA-A
* * ** * * * * * *
235384 TTATAAAACTAGTTAAAGTGAGTAATTAGCCTGTCGAAGGCATTAGTGACCAAAAATGGACTTTT
64 TTATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTTTT
* * * * * *
235449 TTTGTTAATAGATAGCTTTCT-CTTCTTG-TTTCCTAAT-ACA
129 CTTATCAATGGATGGCTTT-TGCTTCATGTTTTCC-AATGA-A
* * * * *
235489 AACAACAAATTATGATTTGTTTTAATTAAAAATGAAAAAAACTTGC--TTTCATATCATTTATTA
1 AACATCAAATTATGATCTGTTTTAA-CAAAAATGAAAAAAA-TT-CAATTTAAAATCATTTA-TA
** * * * * * * * *
235552 AATTATAAAA-CTTTTAAAGTGAGCAACTAA-GC-ATTCATAGGGATGAGTGGCTATAAATAGAC
62 AATTATAAAACCACTTAAAGTGAGTAAC-AAGGCTTTTGA-AGGCATAAGTGACTACAAATGGAC
* *
235614 TTTTCTTGTCAATGGATGTCTTT
125 TTTTCTTATCAATGGATGGCTTT
235637 CATTTCATGT
Statistics
Matches: 618, Mismatches: 166, Indels: 76
0.72 0.19 0.09
Matches are distributed among these distances:
161 2 0.00
162 67 0.11
163 48 0.08
164 4 0.01
165 1 0.00
166 3 0.00
167 3 0.00
168 8 0.01
169 70 0.11
170 182 0.29
171 227 0.37
172 3 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (168 bp):
AACATCAAATTATGATCTGTTTTAACAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAATT
ATAAAACCACTTAAAGTGAGTAACAAGGCTTTTGAAGGCATAAGTGACTACAAATGGACTTTTCT
TATCAATGGATGGCTTTTGCTTCATGTTTTCCAATGAA
Found at i:236999 original size:107 final size:107
Alignment explanation
Indices: 236806--237009 Score: 259
Period size: 107 Copynumber: 1.9 Consensus size: 107
236796 TTTATAAGAG
* *
236806 TATAAAATCATTTCAAGCGAGTATCTAGGCTTTCGAAGGCATGAACGACCATAAATAAACTTTTC
1 TATAAAATCATTTAAAGCGAGTATCTAGGCTTTCAAAGGCATGAACGACCATAAATAAACTTTTC
* * * *
236871 TTGTCAATGGATGGCTTTTGCTTTACATTTCCTGATAGAAAC
66 TTGTCAATGAATGCCTATTGCTTCACATTTCCTGATAGAAAC
* * ** * *
236913 TATAAAATCATTTAAAGCGAGTAAT-TAGGCTTTTAAAGGGAT-AGTTGACTATAAATAGACTTT
1 TATAAAATCATTTAAAGCGAGT-ATCTAGGCTTTCAAAGGCATGA-ACGACCATAAATAAACTTT
*
236976 TCTTGTTAATGAATGCCTATTGCTTCACATTTCC
64 TCTTGTCAATGAATGCCTATTGCTTCACATTTCC
237010 CAGTGCAAAC
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 1 0.01
107 79 0.96
108 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (107 bp):
TATAAAATCATTTAAAGCGAGTATCTAGGCTTTCAAAGGCATGAACGACCATAAATAAACTTTTC
TTGTCAATGAATGCCTATTGCTTCACATTTCCTGATAGAAAC
Found at i:237870 original size:170 final size:171
Alignment explanation
Indices: 236911--238269 Score: 909
Period size: 170 Copynumber: 8.0 Consensus size: 171
236901 CCTGATAGAA
* * * * * ** * *
236911 ACTATAAAATCATTTAAAGCGAGTAATTAGGCTTTTAAAGGGAT-AGTTGACTATAAATAGACTT
1 ACTATAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAG-TGACTATAAATGGACTT
* * * * * * * * ** * **
236975 TTCTTGTTAATGAATGCCTATTGCTTCACATTTCCCAGTGCAAACTTAAAATTATAATCTATTTT
65 TTCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGAT
* * *
237040 AACCAAAAATTAAAAAA-A-TCTAATTTAAAATCATTTATCAG
130 AACCAAAAA-TAAAAAACATTTTGATTTAAAATCATTTATAAG
* * * * * * ** * * *
237081 ATTATAAAACCACTTCAAA-TGGGTAA-TAAGGTTATTGAAGGTATGAGTGACAATAAATGAACT
1 ACTATAAAACC-TTTTAAAGTGAGTAACTATGCTT-TCCAAGGCATGAGTGACTATAAATGGACT
* * * * * * * ** **
237144 TTTCTTGTCAATGGATGACTTTTGTTTCACGATTCTTGATGCAAATAACAAATTACAATCTATTT
64 TTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGA
* * ** ***
237209 TAACCAAAAGTTAGAAAA-A-TTCAACAAAAAATCATTTATAAG
129 TAACCAAAA-ATAAAAAACATTTTGATTTAAAATCATTTATAAG
* * * ** * * * * * **
237251 ATTACT-AAATCATTTAAAGCAAGTAAGTAAGCTTTCGAAGGTC-TAAGTTAAAATAAATGGACT
1 ACTA-TAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGG-CATGAGTGACTATAAATGGACT
* * * * *
237314 TTTTTTGTTAATGGATGACTTTCGCTTTACGTTTCCTAATGCAAACATCCAATTATGAACTATGA
64 TTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGA
* * *
237379 TAATCAAAAATAAAAAACATTTTGATTTACAACCATTTATAAG
129 TAACCAAAAATAAAAAACATTTTGATTTAAAATCATTTATAAG
* * * * *
237422 ACTATAAAATCTTTTAAAATGAGTAACTATGCTTTCGACGGCATGAGTGACTATAAGTGGACTTT
1 ACTATAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAGTGACTATAAATGGACTTT
* * * * *
237487 TCTTATCAATGGATGACTTTTTCCTCACATTTTCTAATGCAAACATCCAATTATGATCTATGATA
66 TCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGATA
* * *
237552 ACTAAAAATCAAAAACATTTTGATTGAAAATCATTTATAAG
131 ACCAAAAATAAAAAACATTTTGATTTAAAATCATTTATAAG
* * * * *
237593 ACTATAAAACCTTTTAAAGTAAGTAACTATGCTTTCAAAGGCATGAGTGACTAGAAGTGAACTTT
1 ACTATAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAGTGACTATAAATGGACTTT
* * * *
237658 TGTTGTCAATGGATGATTTTTGCTTCATGTTTCCTAATGCAAACATCCAATTATGATCTGTGATA
66 TCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGATA
* * *
237723 ACCGAAAATAAAAAACAGTTTGATTTAAAATCATTTATAAA
131 ACCAAAAATAAAAAACATTTTGATTTAAAATCATTTATAAG
* * * * * *
237764 ACCAT-AAACCTTTTAAAGTGAGTAACTATGCTTTCCTAGGTATGATTGAATATAAATGGACCTT
1 ACTATAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAGTGACTATAAATGGACTTT
* * * ** *
237828 TCTTGTCAATGGAT-AGCTTTTGCTTCATGTGTT-CTGATGCAAACAAT-AAATTACCATCTATT
66 TCTTGTCAATGGATGA-CTTTTGCTTCACGT-TTCCTAATGCAAAC-ATCCAATTATGATCTATG
* ** * * * *
237890 TTAACCAAAAATTAAAAAA-A-TTAAAATCAAACTCATTTGTAAG
128 ATAACCAAAAA-TAAAAAACATTTTGATTTAAAATCATTTATAAG
* * ** * * * * * * *
237933 ATTATAAAA-TTATTTAAAGACAATAACTAGGCATTCAAATGCCTAAGTGACTATAAATGGACTT
1 ACTATAAAACCT-TTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
237997 TTCTTATCAATGGAGTG-C-TTTGCTTCACGTTT-CTCATTGCAAATATCAAATTATGATATGTT
65 TTCTTGTCAATGGA-TGACTTTTGCTTCACGTTTCCT-AATGCAAACATCCAATTATGATCTATG
* * ** * *
238059 TTAACTAAAAATAAAAAA-AAATTCATTTTAAAATCGTTTAT-AG
128 ATAACCAAAAATAAAAAACATTTTGA-TTTAAAATCATTTATAAG
* * *** * * * * * * *
238102 CAATATAAAACCATTTAAAACAAGCAATTA-GTTTTTCGAACGTATGAGTGACTATAAATGAACT
1 -ACTATAAAACCTTTTAAAGTGAGTAACTATG-CTTTCCAAGGCATGAGTGACTATAAATGGACT
* * * *
238166 TTTCTTCTCAATGGAT-AGCTTTCGCTTCACGTTTTCCT-ATGCAAACATCAAATTATGATCAAT
64 TTTCTTGTCAATGGATGA-CTTTTGCTTCACG-TTTCCTAATGCAAACATCCAATTATGATCTAT
** *
238229 --TAACCAAAAATAAAAAA-ATTTCAATTCAAAATCATTTATAA
127 GATAACCAAAAATAAAAAACATTTTGATTTAAAATCATTTATAA
238270 AGTTATTAAT
Statistics
Matches: 935, Mismatches: 221, Indels: 67
0.76 0.18 0.05
Matches are distributed among these distances:
168 27 0.03
169 101 0.11
170 439 0.47
171 363 0.39
172 3 0.00
173 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (171 bp):
ACTATAAAACCTTTTAAAGTGAGTAACTATGCTTTCCAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGACTTTTGCTTCACGTTTCCTAATGCAAACATCCAATTATGATCTATGATA
ACCAAAAATAAAAAACATTTTGATTTAAAATCATTTATAAG
Found at i:238300 original size:20 final size:20
Alignment explanation
Indices: 238272--238309 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
238262 ATTTATAAAG
*
238272 TTATTAATGGATGGCTTTTC
1 TTATCAATGGATGGCTTTTC
238292 TTATCAATGGATGGCTTT
1 TTATCAATGGATGGCTTT
238310 CGCTACACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (20 bp):
TTATCAATGGATGGCTTTTC
Found at i:238558 original size:160 final size:160
Alignment explanation
Indices: 238389--238685 Score: 407
Period size: 160 Copynumber: 1.9 Consensus size: 160
238379 TAAAATCATT
* * * * * *
238389 TATAAGATTATAAAACTACTTAATGTGAGTAACTATAATTTCAAAGGCATGAGTGACTATAAATG
1 TATAAGATTATAAAACTACCTAAAGCGAGCAACTATAATTTCAAAGGCATAAGTGACTATAAATA
* **
238454 GACTTTTCTTATCAATGGATGACTTTTGCTTTGCGTTTCCAAATGCAAAAAAT-AAATTATGATA
66 GACTTTTCTTATCAATGGATGACTTTTACTTCACGTTTCCAAATG-AAAAAATCAAATTATGATA
238518 TGTTTTAACCAAAAATAAAAAAAATTTAACG
130 TGTTTTAACCAAAAATAAAAAAAATTTAACG
* ** * *
238549 TATAAGATTATAAAACTACCTAAAGCGAGCAATTATGTTTTCGAAGGCATAAGTGATTATAAATA
1 TATAAGATTATAAAACTACCTAAAGCGAGCAACTATAATTTCAAAGGCATAAGTGACTATAAATA
* * ** *
238614 GACTTTTCTTGTCAATGGATGACTTTTACTTCACGTTTCCCAATGAAAAGTTCAAATTATGATTT
66 GACTTTTCTTATCAATGGATGACTTTTACTTCACGTTTCCAAATGAAAAAATCAAATTATGATAT
238679 GTTTTAA
131 GTTTTAA
238686 GTAAAAATCA
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
159 5 0.04
160 112 0.96
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (160 bp):
TATAAGATTATAAAACTACCTAAAGCGAGCAACTATAATTTCAAAGGCATAAGTGACTATAAATA
GACTTTTCTTATCAATGGATGACTTTTACTTCACGTTTCCAAATGAAAAAATCAAATTATGATAT
GTTTTAACCAAAAATAAAAAAAATTTAACG
Found at i:240669 original size:171 final size:169
Alignment explanation
Indices: 238329--242293 Score: 1907
Period size: 171 Copynumber: 23.4 Consensus size: 169
238319 TTTTTTGACA
* * * * * *
238329 GAAACAACAAATTATGATATGTTTTAA-AAAAAATGAAAAGAAATTCAACTTAAAATCATTTATA
1 GAAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAA-AAATTCAATTTAAAATTATTTATT
* * * * *** * *
238393 AGATTATAAAACTACTTAATGTGAGTAACTATAATTTCAAAGGCATGAGTGACTATAAATGGACT
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACT
* ** * *
238458 TTTCTTATCAATGGAT-GACTTTTGCTTTGCGTTTCC-AAAT
129 TTTCTTGTCAATGGATAG-CTTTTGCTTCACATTTCCTATAT
* * **
238498 GCAAAAAATAAATTATGATATGTTTTAACCAAAAAT--AAAAAA---AATTT-AACGTA--TA--
1 G-AAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
* ** * * ** * * * *
238553 AGATTATAAAACTACCTAAAGCGAGCAATTATGTTTTCGAAGGCATAAGTGATTATAAATAGACT
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACT
* * *
238618 TTTCTTGTCAATGGAT-GACTTTTACTTCACGTTTCCCA-AT
129 TTTCTTGTCAATGGATAG-CTTTTGCTTCACATTTCCTATAT
* ** * * * * *
238658 GAAA-AGTTCAAATTATGATTTGTTTTAAGTAAAAATCAAAAGCAATTCAATTTATAATTATTTC
1 GAAACA-AT-AAATTATGA-TTGTTTTAACCAAAGATGAAAA-AAATTCAATTTAAAATTATTTA
* * * * * * *** *
238722 TAAGATCATGAAAGCATTTCAAGTGAGCAGTTAGGCTTTCGTAA-GCATGAGTGACTCTAAAT-G
62 TTAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCG-AAGGCATGAGTGACTATAAATAG
* * * * ** *
238785 AAC-TTTCTTATCAATGAATTA-CTTTCGCTTTATGTTTAACC-AGAT
126 -ACTTTTCTTGTCAATGGA-TAGCTTTTGCTTCACATTT--CCTATAT
* * * *
238830 G-AAC-ATCAAATTATAATCT-TTTTAACCAAAAATGAAAAAAAGATCTAAATTTAAAATCATTT
1 GAAACAAT-AAATTATGAT-TGTTTTAACCAAAGATG-AAAAAA-AT-TCAATTTAAAATTATTT
* * * * ** * *
238892 A-GAAAGTTATAAAACTACTTAAAGCAAGTAACAAGGTTTTCAAAAGG-ATGAGTGACTATAAAT
61 ATTAGA-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTC-GAAGGCATGAGTGACTATAAAT
* * *
238955 -GAACTTTTCTTGTCAATGGAT-GACTTTCGCTTCA-AGTTTTCT-GAT
124 AG-ACTTTTCTTGTCAATGGATAG-CTTTTGCTTCACA-TTTCCTATAT
* * * ** *
239000 GCAAATAA-AAAGTTA-CATTTAATTTTAACC----A--AAAATTATTCAACTTAAAATTATTTA
1 G-AAACAATAAA-TTATGA-TT-GTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTA
* * ** * * * *
239057 TAAGATTATTAAACCATTTAAAGCAAGTAACTAGGTTTTCGAAGGTATGATTGACTATAAATAGA
62 TTAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGA
* * * * ** *
239122 CCTTTCTTGTCAATAGATGGCTTTTACTTCATGTTTGCTA-AT
127 CTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * * **
239164 GCAAATAACAAATTATGATCTATTTTAACCAAAGCTTAAAACAAA-TCAACTT-AAATCGTTTAT
1 G-AAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAA-AAATTCAATTTAAAATTATTTAT
* * ** ** * * *
239227 GAGATTATAAAACTATTTAAAGAAAGTAATTAGACTTT-GAATGGCATTAGTGACTATAAATAAA
63 TAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATAGA
* * * * *
239291 CTTTTTTTTTTCAATGGATGGCTTTTGCTTCATATGTT-CT-GAT
127 C-TTTTCTTGTCAATGGATAGCTTTTGCTTCACAT-TTCCTATAT
* * ** * * * * * * * * *
239334 GCAAGCAACAAATTACAAACTATTTAAACCAAAAATTAAAAAAACTCAAGTTAAAATCATTTATA
1 G-AAACAATAAATTA-TGATTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
*** * * * * * *
239399 AGATTATAAAACCATTTAAAACAAGTAACTAGGC-TTCTGAAAGCATAAGTGACTAGAAGTGGAC
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTC-GAAGGCATGAGTGACTATAAATAGAC
* * *
239463 TGTTTTTTGTCAATGGATAGCTTTTGCTTCACGTTTCCCA-AT
128 T-TTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * *
239505 GCAAACAAAAAATTGTGATCTGTTTGAACCAAAAAGGAAAAAAATTCAATATAAAATTATTTATT
1 G-AAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
* * * * * * *
239570 AGGTTATCAAACCATTTAAAATGAGTAACAAGGCTTTTGTAGGCATG-GTTGACTATAGATCGAC
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAG-TGACTATAAATAGAC
* * * *
239634 TTTTCTTGTCAGTGGATGGCTTTCGCTTCACAATTCCT-TAT
128 TTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * * * * * * *
239675 GCAAATAACAAACTACGATCTGTTTTATCAAAACATGAAAAAAATTAAATTTAGAATCATTTATA
1 G-AAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
* * * * * *
239740 AGATTAT-AAACCATTTAAAGTGAGCAACTAGGCTTTTGAAGGCATGAGTTACTATAAATTGATT
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACT
* * * * * *
239804 TTTCTTATTAATGGATTGC-TTTACTTTACATTTCCCA-AT
129 TTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* *
239843 -ACAA-ATATGAAATTATGATTTTTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTACTTA
1 GA-AACA-AT-AAATTATGA-TTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTA
* ** * * * *
239906 TTAGAGTATAAAACCATTTAAAGCAAGTAACATGGCTTTCGAAGGGATAAGTGACTATAAGTTA-
62 TTAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAA-ATAG
* ** ** *
239970 ACTTTTCTTGTTAATGGATAGCTTTTGCTTCATGTTTCC-CGAC
126 ACTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* ** * * * * * *
240013 GTAAACAACAAATTATTGCCTGTTTTAACTAAAAATTAAAAAAATTTAATTTAAAATCATTTATA
1 G-AAACAATAAATTA-TGATTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
* ** * * * * *
240078 AGATTATAAAACCACTTAAAGCAAGTAACTATGCTTTTC-AAGGCATGAGTGACTGTAAATGGTC
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGC-TTTCGAAGGCATGAGTGACTATAAATAGAC
*
240142 TTTTCTTGTCAATGGA-AGGCTTTTGCTTCACGTTT-CTCA-AT
128 TTTTCTTGTCAATGGATA-GCTTTTGCTTCACATTTCCT-ATAT
* ** * * * *
240183 GAAAAAATCAAATTATTTTCTATTTTAACAAAAGATGGAAAAAGAAATTCAATTGAAAATCATTT
1 GAAACAAT-AAATTATGAT-TGTTTTAACCAAAGAT-G-AAAA-AAATTCAATTTAAAATTATTT
* * * * * *
240248 A-TAAAGTTATAAAACCACTTAAAGTGAGGAATAATGCTTTCGAAGGCATGAGTGACTATAAATG
61 ATTAGA-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATA
* * * **
240312 GACTATTCTTGCCAATGGATGGCTTTCT-CTTCATGTTT-CT-TAGT
125 GACTTTTCTTGTCAATGGATAGCTTT-TGCTTCACATTTCCTATA-T
* * * * * * *
240356 GTAAA-AATTAAATTATAATCTCTTTTAACCAAAAAGGAAAGAAAATTTAATTTAAAAATAGTTA
1 G-AAACAA-TAAATTATGAT-TGTTTTAACCAAAGATGAAA-AAAATTCAATTTAAAATTATTTA
* * * * * ** * *
240420 TAAGATTCTAAAACCTTTTAAAGCGAGCAA-TTGGACCTTT-GAAGGAATGACTGACTATAAATA
62 TTAGATTATAAAACCATTTAAAGTGAGTAACAAGG--CTTTCGAAGGCATGAGTGACTATAAATA
* * * * *
240483 AACTTTTGTTGTCAATAGATAGCTTTTGCTTGACATTTCTTGATAT
125 GACTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCT-ATAT
*
240529 G-AACAATAAATTATGATTGGTTTGAACCAAAGATGAAAAGAAATTCAATTTAAAATTATTTATT
1 GAAACAATAAATTATGATT-GTTTTAACCAAAGATGAAAA-AAATTCAATTTAAAATTATTTATT
* * * * * *
240593 AGACTATAAAACCATCTAAAGTGAGTAACAAGTCTTTCGAAGGTATGAGTAACTATAGATAGACT
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACT
* * * * *
240658 TTACATGTCAATGGATAGATTTTGATTCACGTTTCCTA-AT
129 TTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * * * * *
240698 GTAAATAACAAATTATGATATGTTTTAATCAAAAATTAAAACAATTCAACTTAAAATCATTTATA
1 G-AAACAATAAATTATGAT-TGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
* * ** ** * * * *
240763 AGATCATAAAACTATTTAAAGCAAGTAACTTGACCTTAGAAGGCAAGAGAT-ACTATAAATAGAC
64 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAG-TGACTATAAATAGAC
* * ** **
240827 -TTTCTTATCAATAGAT-GCTTTCACTTCATGTTTCCTA-AT
128 TTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * *
240866 GCAAA-AATCAAATTACT-TTCTGTTTTACCCAAAAAAGAAAAAAATTCAATTT-GAATACATTT
1 G-AAACAAT-AAATTA-TGAT-TGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAAT-TATTT
** * * *
240928 ATTA-AGTTATAAAACCACTTTAAACCGAGTAACAAGCCTTTCAAAGGCATGAGTGACCATAAAT
61 ATTAGA-TTATAAAACCA-TTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAAT
* **
240992 AGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAGGTTTTCC-A-AT
124 AGACTTTTCTTGTCAATGGATAGCTTTTGCTTCA-CATTTCCTATAT
* * * *
241037 GCAAACAATAAATTATGAACTGTTTTAACCAAAAATAAAAAATAATTCAATTTAAAATCATTTAT
1 G-AAACAATAAATTATG-ATTGTTTTAACCAAAGATGAAAAA-AATTCAATTTAAAATTATTTAT
* * * * * * * * * *
241102 AAGATCATAAAATCATTTAAAGCGAGCAAAAAGGTTTTCAAAGACAT-ATGTAACTATAAATAGA
63 TAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA-GTGACTATAAATAGA
* * * ** * *
241166 CTTTACTTGTAAATGGATTGCTTTTGCTTCATGTTTTTCAATA-
127 CTTTTCTTGTCAATGGATAGCTTTTGCTTCA-CATTTCCTATAT
* * * * *
241209 CAAAC-ATCAAATTATGA-TCTTTTAAGCCATAA-ATAAAAAAAATTCAATTTAAAATCATGTAT
1 GAAACAAT-AAATTATGATTGTTTTAA-CCA-AAGATGAAAAAAATTCAATTTAAAATTATTTAT
* ** * * * * *
241271 AAG-TTATAAAA-C-TTCCTAAAACAGGGTAACAAGGCTTTCAAAGGTAAGCGTGACTATAAATA
63 TAGATTATAAAACCATT--T-AAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATA
* * * *
241333 GACTTTTCTTGTTAATGGATGGCTTTCGCTGCACATTTCCTA-AT
125 GACTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * * * * * *
241377 GCAACAATAAATTATGAGATGTTTTAACTAAAAATGAAAACAATTTAATTTAAAATCATTT-TT-
1 GAAACAATAAATTATGA-TTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATTA
* * * * ** * *
241440 GAAGTTAGAAAAACTACTTAAAGTGAGTTACAAGGCTTTTAAAGGCTTGAGTGACTATAAATAAA
65 G-A-TTA-TAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGA
* * ** * *
241505 CTTTTCTTGTAAATGGATGGCTTTCACTTCATA-TTCCTCTAT
127 CTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
* * *
241547 GCAAAC-ATGAAATTATGATATGCTTGAACCAGAA-ATGAAAAAAAAATT-AATTTAAAATCATT
1 G-AAACAAT-AAATTATGAT-TGTTTTAACCA-AAGATG--AAAAAAATTCAATTTAAAATTATT
* * ** *
241609 TATGA-AGTTATAAAACCACTTAAAGTGAGTAACAAAACTTTCAAAGGCATGAGTGACTATAAAT
60 TATTAGA-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAAT
* * * *
241673 AGACTTTTCTTATCAGTGGATGGCTTTTGCTT--CATGTTCCTA-GT
124 AGACTTTTCTTGTCAATGGATAGCTTTTGCTTCACAT-TTCCTATAT
* * * * * * * *
241717 GCAAAC-ATACAACTATGAACTGTTTTAACAAAAAATTAAAAAAAATT-GATTTAAAATCATTTG
1 G-AAACAATA-AATTATG-ATTGTTTTAACCAAAGA-TGAAAAAAATTCAATTTAAAATTATTTA
* * * * * * * * * * *
241780 TAAGA-TATAAAATCACTTGAAGCGAGTAATAAGTCTTTGGAAGGGATGAGTGACTATAAATTGT
62 TTAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGA
** * **
241844 C-TTTCTTACCAATGGATGGCTTTTGCTTCATGTTT-CT-TAGT
127 CTTTTCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATA-T
* * * *
241885 GCAAACAACT-AATTATG-TTCTATTCTAACAAAAAATTAAAAAATAATTCAATTTAAAATTATT
1 G-AAACAA-TAAATTATGATTGT-TT-TAACCAAAGA-TGAAAAA-AATTCAATTTAAAATTATT
* * * * * * * * *
241948 TA-TAAAGTCATAAAACTATTTAAAGTGAGTAACTAGGTTTTCGAAGGTATAAATGACTAGAAAT
60 TATTAGA-TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAAT
* * * ** ** * **
242012 GGACTTTTCTTGT-ACATGGATCGCCTTCACTTCATGTTTTTCGGTA-
124 AGACTTTTCTTGTCA-ATGGATAGCTTTTGCTTCA-CATTTCCTATAT
* * * * * *
242058 CAAAC-ATCAAATTATG-TTCTTTTTAACTAGAA-ATGAAAACAATTCAATTTAAAATCATCTA-
1 GAAACAAT-AAATTATGATT-GTTTTAACCA-AAGATGAAAAAAATTCAATTTAAAATTATTTAT
* * * **
242119 TAAAGTTATAAAACC-TCTTAAAGCGGGTAACAAGATTTTCGAAGGCATGAGTGACTATAAATAG
63 TAGA-TTATAAAACCAT-TTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAG
* * * * * *
242183 ACTTGTCTTGTCAATAGATGGCTTTCGTTTTACATTTTCC-A-AT
126 ACTTTTCTTGTCAATGGATAGCTTTTGCTTCACA-TTTCCTATAT
** * * * * * *
242226 GCATGCAAGAAATTACGATTTGTTTTAACCAAAAATAAAAAAAATT-AATTTAAAATCATTTATA
1 G-AAACAATAAATTATGA-TTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATT
242290 AGAT
64 AGAT
242294 CGAGCAACTA
Statistics
Matches: 2959, Mismatches: 629, Indels: 416
0.74 0.16 0.10
Matches are distributed among these distances:
158 1 0.00
159 4 0.00
160 112 0.04
161 2 0.00
162 5 0.00
163 6 0.00
164 118 0.04
165 15 0.01
166 15 0.01
167 45 0.02
168 253 0.09
169 553 0.19
170 658 0.22
171 841 0.28
172 167 0.06
173 154 0.05
174 8 0.00
175 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (169 bp):
GAAACAATAAATTATGATTGTTTTAACCAAAGATGAAAAAAATTCAATTTAAAATTATTTATTAG
ATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTT
TCTTGTCAATGGATAGCTTTTGCTTCACATTTCCTATAT
Found at i:241048 original size:510 final size:508
Alignment explanation
Indices: 238288--243695 Score: 2699
Period size: 510 Copynumber: 10.7 Consensus size: 508
238278 ATGGATGGCT
* ** * * * *
238288 TTTCTTATCAATGGATGGCTTTCGCTACACGTTT--T-TTGACAGAAACAACAAATTATGATATG
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATG-CA-AAA-ATCAAATTATAATCTG
* * *
238350 TTTTAA-AAAAAATGAAAAGAAATTCAACTTAAAATCATTTA-TAAGATTATAAAACTAC-TTAA
63 TTTTAACCAAAAATGAAAA-AAATTCAATTTAAAATCATTTATTAAG-TTATAAAACCACTTTAA
* ** * *** * * *
238412 TGTGAGTAACTATAATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGAC
126 AGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC
** *
238477 TTTTGCTTTGCG-TTTCCAAATGCAAAAAATAAATTATGATATGTTTTAACCAAAAAT-AAAAAA
191 TTTTGCTTCACGTTTTCC-AATGCAAACAATAAATTATGAT-TGTTTTAACCAAAAATAAAAAAA
** * * * * *
238540 ---AATTT---A--ACGTATAAGATTATAAAACTACCTAAAGCGAGCAATTATGT-TTTCGAAGG
254 TTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAA-CAAGTCTTTCGAAGG
* * * * * *
238596 CATAAGTGATTATAAATAGACTTTTCTTGTCAATGGATGACTTTTACTTCACGTTTCCCAATGAA
318 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCA
* * * * * * *
238661 AAGT-TCAAATTATGATTTGTTTTAAGT-AAAAATCAAAAGCAATTCAATTTATAATTATTTCTA
383 AA-TAACAAATTATGATATGTTTTAA-TCAAAAATTAAAA-AAATTCAATTTAAAATCATTTATA
* * * * * * * *
238724 AGATCATGAAAGC-ATTTCAAGTGAG-CAGTTAGGCTTTCGTAA-GCATGAGTGACTCTAAAT-G
445 AGATTAT-AAAACTATTTAAAGTAAGTAACTT-GGCTTTAG-AAGGCATGAGTGACTATAAATAG
238785 AAC
507 -AC
* ** * * *
238788 TTTCTTATCAATGAATTACTTTCGCTTTATGTTTAACC-AGATG--AACATCAAATTATAATCT-
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTT--CCTA-ATGCAAAAATCAAATTATAATCTG
* ** *
238849 TTTTAACCAAAAATGAAAAAAAGATCTAAATTTAAAATCATTTAGAAAGTTATAAAACTAC-TTA
63 TTTTAACCAAAAATG-AAAAAA-AT-TCAATTTAAAATCATTTATTAAGTTATAAAACCACTTTA
*
238913 AAGCAAGTAACAAGGTTTTCAAAAGG-ATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGAT
125 AAGCAAGTAACAAGGCTTTC-AAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGAT
* * * ** * * *
238976 GACTTTCGCTTCAAGTTTTCTGATGCAAATAA-AAAGTTA-CATTTAATTTTAACCAAAAAT---
188 GGCTTTTGCTTCACGTTTTCCAATGCAAACAATAAA-TTATGA-TT-GTTTTAACCAAAAATAAA
* * * * * *
239036 --TATTCAACTTAAAATTATTTATAAGATTATTAAACCATTTAAAGCAAGTAACTAGGT-TTTCG
250 AAAATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAAC-AAGTCTTTCG
* * * * * * *
239098 AAGGTATGATTGACTATAAATAGACCTTTCTTGTCAATAGATGGCTTTTACTTCATGTTTGCTAA
314 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAA
* * * ** * *
239163 TGCAAATAACAAATTATGATCTATTTTAACCAAAGCTTAAAACAAA-TCAACTT-AAATCGTTTA
379 TGCAAATAACAAATTATGATATGTTTTAATCAAAAATTAAAA-AAATTCAATTTAAAATCATTTA
* * * *
239226 TGAGATTATAAAACTATTTAAAGAAAGTAA-TTAGACTTT-GAATGGCATTAGTGACTATAAATA
443 TAAGATTATAAAACTATTTAAAGTAAGTAACTT-GGCTTTAGAA-GGCATGAGTGACTATAAATA
*
239289 AAC
506 GAC
* * * * * * *
239292 TTTTTTTTTTCAATGGATGGCTTTTGCTTCATATGTT-CTGATGCAAGCAA-CAAATTACAAACT
1 --TTTCTTATCAATGGATGGCTTTCGCTTCATAT-TTCCTAATGCAA-AAATCAAATTATAATCT
* * * * *
239355 ATTTAAACCAAAAATTAAAAAAACTCAAGTTAAAATCATTTA-TAAGATTATAAAACCA-TTTAA
62 GTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATTAAG-TTATAAAACCACTTTAA
* * * * * * * * *
239418 AACAAGTAACTAGGCTTCTGAAA-GCATAAGTGACTAGAAGTGGACTGTTTTTTGTCAATGGATA
126 AGCAAGTAACAAGGCTT-TCAAAGGCATGAGTGACTATAAATAGACT-TTTCTTGTCAATGGATG
* * * * *
239482 GCTTTTGCTTCACGTTTCCCAATGCAAACAAAAAATTGTGATCTGTTTGAACCAAAAAGGAAAAA
189 GCTTTTGCTTCACGTTTTCCAATGCAAACAATAAATTATGAT-TGTTTTAACCAAAAA-TAAAAA
* * * * * ** * * *
239547 AATTCAATATAAAATTATTTATTAGGTTATCAAACCATTTAAAATGAGTAACAAGGCTTTTGTAG
252 AATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGTCTTTCGAAG
* * * * ** *
239612 GCATG-GTTGACTATAGATCGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCACAATTCCTTATG
317 GCATGAG-TGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATG
* * * * * *
239676 CAAATAACAAACTACGATCTGTTTT-ATCAAAACATGAAAAAAATTAAATTTAGAATCATTTATA
381 CAAATAACAAATTATGATATGTTTTAATCAAAA-ATTAAAAAAATTCAATTTAAAATCATTTATA
* * * * * * * *
239740 AGATTAT-AAACCATTTAAAGTGAGCAACTAGGCTTTTGAAGGCATGAGTTACTATAAATTGATT
445 AGATTATAAAACTATTTAAAGTAAGTAACTTGGCTTTAGAAGGCATGAGTGACTATAAATAGA-C
* * * * * * * * * * * *
239804 TTTCTTATTAATGGATTGCTTT-ACTTTACATTTCCCAATACAAATATGAAATTATGATTTTTTT
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAATTATAATCTGTTT
* * *
239868 TAACCAAAGATGAAAAAAATTCAATTTAAAATTACTTATTAGAG-TATAAAACCA-TTTAAAGCA
66 TAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATTA-AGTTATAAAACCACTTTAAAGCA
* * * * * * *
239931 AGTAACATGGCTTTCGAAGGGATAAGTGACTATAAGTTA-ACTTTTCTTGTTAATGGATAGCTTT
130 AGTAACAAGGCTTTCAAAGGCATGAGTGACTATAA-ATAGACTTTTCTTGTCAATGGATGGCTTT
* * * * * * ** * *
239995 TGCTTCATGTTTCCCGACGTAAACAACAAATTATTGCCTGTTTTAACTAAAAATTAAAAAAATTT
194 TGCTTCACGTTTTCCAATGCAAACAATAAATTA-TGATTGTTTTAACCAAAAA-TAAAAAAATTC
* * *
240060 AATTTAAAATCATTTATAAGATTATAAAACCA-CTTAAAGCAAGTAACTA-TGCTTTTC-AAGGC
257 AATTTAAAATTATTTATAAGATTATAAAACCATC-TAAAGCGAGTAACAAGT-C-TTTCGAAGGC
* * * *
240122 ATGAGTGACTGTAAATGGTCTTTTCTTGTCAATGGAAGGCTTTTGCTTCACGTTT-CTCAATG-A
319 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCA
* ** * * * *
240185 AAAAATCAAATTATTTTCTATTTTAA-CAAAAGATGGAAAAAGAAATTCAATTGAAAATCATTTA
383 AATAA-CAAATTATGATATGTTTTAATCAAAA-AT--TAAAA-AAATTCAATTTAAAATCATTTA
* * * * *
240249 TAA-AGTTATAAAACCACTTAAAGTGAGGAA-TAAT-GCTTTCGAAGGCATGAGTGACTATAAAT
443 TAAGA-TTATAAAACTATTTAAAGTAAGTAACT--TGGCTTTAGAAGGCATGAGTGACTATAAAT
*
240311 GGAC
505 AGAC
** * * * * * * *
240315 TATTCTTGCCAATGGATGGCTTTCTCTTCATGTTTCTTAGTGTAAAAATTAAATTATAATCTCTT
1 T-TTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAATTATAATCTGTT
* * * * *
240380 TTAACCAAAAAGGAAAGAAAATTTAATTTAAAAAT-AGTTA-TAAGATTCTAAAACC-TTTTAAA
65 TTAACCAAAAATGAAA-AAAATTCAATTT-AAAATCATTTATTAAG-TTATAAAACCACTTTAAA
* * ** * * * * * * *
240442 GCGAGCAA-TTGGACCTTT-GAAGGAATGACTGACTATAAATAAACTTTTGTTGTCAATAGATAG
127 GCAAGTAACAAGG--CTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGG
* * ** * *
240505 CTTTTGCTTGACATTTCTTGATATG--AACAATAAATTATGATTGGTTTGAACCAAAGATGAAAA
190 CTTTTGCTTCACGTTT-TCCA-ATGCAAACAATAAATTATGATT-GTTTTAACCAAAAAT-AAAA
* * *
240568 GAAATTCAATTTAAAATTATTTATTAGACTATAAAACCATCTAAAGTGAGTAACAAGTCTTTCGA
251 -AAATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGTCTTTCGA
* * * * * * * *
240633 AGGTATGAGTAACTATAGATAGACTTTACATGTCAATGGATAGATTTTGATTCACGTTTCCTAAT
315 AGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAT
* * *
240698 GTAAATAACAAATTATGATATGTTTTAATCAAAAATTAAAACAATTCAACTTAAAATCATTTATA
380 GCAAATAACAAATTATGATATGTTTTAATCAAAAATTAAAAAAATTCAATTTAAAATCATTTATA
* * * * *
240763 AGATCATAAAACTATTTAAAGCAAGTAACTTGACCTTAGAAGGCAAGAGAT-ACTATAAATAGAC
445 AGATTATAAAACTATTTAAAGTAAGTAACTTGGCTTTAGAAGGCATGAG-TGACTATAAATAGAC
* * * *
240827 TTTCTTATCAATAGAT-GCTTTCACTTCATGTTTCCTAATGCAAAAATCAAATTACT-TTCTGTT
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAATTA-TAATCTGTT
* * * *
240890 TTACCCAAAAAAGAAAAAAATTCAATTT-GAATACATTTATTAAGTTATAAAACCACTTTAAACC
65 TTAACCAAAAATGAAAAAAATTCAATTTAAAAT-CATTTATTAAGTTATAAAACCACTTTAAAGC
* * *
240954 GAGTAACAAGCCTTTCAAAGGCATGAGTGACCATAAATAGACTTTTCTTGTCAATGGATGGCTTT
129 AAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTT
* *
241019 TGCTTCAGGTTTTCCAATGCAAACAATAAATTATGAACTGTTTTAACCAAAAATAAAAAATAATT
194 TGCTTCACGTTTTCCAATGCAAACAATAAATTATG-ATTGTTTTAACCAAAAAT-AAAAA-AATT
* * * * * * * *
241084 CAATTTAAAATCATTTATAAGATCATAAAATCATTTAAAGCGAGCAAAAAGGT-TTTCAAAGACA
256 CAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAA-GTCTTTCGAAGGCA
* * * * * * *
241148 T-ATGTAACTATAAATAGACTTTACTTGTAAATGGATTGCTTTTGCTTCATGTTT-TTCAATACA
320 TGA-GTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AATGCA
* * * * * * *
241211 AACATCAAATTATG--ATCTTTTAAGCCATAAATAAAAAAAATTCAATTTAAAATCATGTATAAG
383 AATAACAAATTATGATATGTTTTAA-TCAAAAATTAAAAAAATTCAATTTAAAATCATTTATAAG
* ** * ** * * *
241274 -TTATAAAACT-TCCTAAAACAGGGTAACAAGGCTTTCA-AAGGTAAGCGTGACTATAAATAGAC
447 ATTATAAAACTAT-TTAAAGTA-AGTAACTTGGCTTT-AGAAGGCATGAGTGACTATAAATAGAC
* * * * * * **
241336 TTTTCTTGTTAATGGATGGCTTTCGCTGCACATTTCCTAATGCAACAAT-AAATTATGAGATGTT
1 -TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAATTATAATCTGTT
* * * * *
241400 TTAACTAAAAATGAAAACAATTTAATTTAAAATCATTT-TTGAAGTTAGAAAAACTAC-TTAAAG
65 TTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATT-AAGTTA-TAAAACCACTTTAAAG
** * * * * *
241463 TGAGTTACAAGGCTTTTAAAGGCTTGAGTGACTATAAATAAACTTTTCTTGTAAATGGATGGCTT
128 CAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTT
** * * * * *
241528 TCACTTCA--TATTCCTCTATGCAAAC-ATGAAATTATGATATGCTTGAACCAGAAATGAAAAAA
193 TTGCTTCACGT-TTTC-CAATGCAAACAAT-AAATTATGAT-TGTTTTAACCA-AAA--ATAAAA
* * ** *
241590 AAATT-AATTTAAAATCATTTATGAAG-TTATAAAACCA-CTTAAAGTGAGTAACAAAACTTTCA
251 AAATTCAATTTAAAATTATTTAT-AAGATTATAAAACCATC-TAAAGCGAGTAACAAGTCTTTCG
* * * *
241652 AAGGCATGAGTGACTATAAATAGACTTTTCTTATCAGTGGATGGCTTTTGCTTCATG-TTCCTAG
314 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAA
* * *
241716 TGCAAACATAC-AACTATGA-ACTGTTTTAA-CAAAAAATTAAAAAAAATT-GATTTAAAATCAT
379 TGCAAATA-ACAAATTATGATA-TGTTTTAATC-AAAAATT-AAAAAAATTCAATTTAAAATCAT
* * * ** * * * *
241777 TTGTAAGA-TATAAAA-TCACTTGAAGCGAGTAA-TAAGTCTTTGGAAGGGATGAGTGACTATAA
440 TTATAAGATTATAAAACT-ATTTAAAGTAAGTAACT-TGGCTTTAGAAGGCATGAGTGACTATAA
* *
241839 ATTGTC
503 ATAGAC
* * * * * * ** *
241845 TTTCTTACCAATGGATGGCTTTTGCTTCATGTTTCTTAGTGCAAACAA-CTAATTATGTTCTATT
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAA-AATCAAATTATAATCTGTT
* * * * * * *
241909 CTAACAAAAAATTAAAAAATAATTCAATTTAAAATTATTTATAAAGTCATAAAACTA-TTTAAAG
65 TTAACCAAAAA-TGAAAAA-AATTCAATTTAAAATCATTTATTAAGTTATAAAACCACTTTAAAG
** * * * * * * * * * *
241973 TGAGTAACTAGGTTTTCGAAGGTATAAATGACTAGAAATGGACTTTTCTTGT-ACATGGATCGCC
128 CAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA-ATGGATGGCT
** * * ** * * * * *
242037 TTCACTTCATGTTTTTCGGTACAAAC-ATCAAATTATG-TTCTTTTTAACTAGAAATGAAAACAA
192 TTTGCTTCACGTTTTCCAATGCAAACAAT-AAATTATGATT-GTTTTAACCAAAAAT-AAAAAAA
* * *
242100 TTCAATTTAAAATCATCTATAA-AGTTATAAAACC-TCTTAAAGCGGGTAACAAGAT-TTTCGAA
254 TTCAATTTAAAATTATTTATAAGA-TTATAAAACCATC-TAAAGCGAGTAACAAG-TCTTTCGAA
* * * * * *
242162 GGCATGAGTGACTATAAATAGACTTGTCTTGTCAATAGATGGCTTTCGTTTTACATTTTCC-AAT
316 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAC-GTTTCCTAAT
*** * * * * *
242226 GCATGCAAGAAATTACGATTTGTTTTAACCAAAAATAAAAAAAATT-AATTTAAAATCATTTATA
380 GCAAATAACAAATTATGATATGTTTTAATCAAAAATTAAAAAAATTCAATTTAAAATCATTTATA
* * ** * *
242290 AG---AT----C--------G--AGCAACTAT-GATTTTCAAGGCATGAATGACTATAAATGGAT
445 AGATTATAAAACTATTTAAAGTAAGTAACT-TGGCTTTAGAAGGCATGAGTGACTATAAATAGA-
*
242337 T
508 C
* * * * ** * * * *
242338 TTTCTTATCAATAGATGGCCTTCACTTTACGTTTCCTGATGCAAAAATTAAACTT-TGATCTAAT
1 TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAA-TTATAATCT-GT
* *
242402 TTTAACCGTAAAACTGAAGAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT-AAA--A---T
64 TTTAACC--AAAA---ATGAAAAAAATTCAATTTAAAATCATTTATTAAGTTATAAAACCACTTT
*
242461 --------T------GC-TT-AAA-G--TGAGTG---AT-AAT-G-C-TTTCTTGTCAATTGATG
124 AAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG
** * * * ** ** ** * * ** *
242500 GCTTGCGCTTCATG-TTCCCAGTATAGGCATCATATTATGATCTATTTTAAATAGAAATTAAAAG
189 GCTTTTGCTTCACGTTTTCCAATGCAAACAATAAATTATGAT-TGTTTTAACCA-AAAATAAAA-
* * * * * * ** **
242564 AATATT-GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAATGAGTAGGATTTCGA
251 AA-ATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGTCTTTCGA
* * * * * ** * * * *
242628 AGGTATAAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTCACTTTAAGTTTCTTGAT
315 AGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAT
* * * * * *
242693 GAAAACATCAAATGT-TAATCTGTTTTAA-CAAAAAATGAAAAAAAATTCAATTTCAAAATCATT
380 GCAAATAACAAAT-TATGATATGTTTTAATC-AAAAAT-TAAAAAAATTCAATTT-AAAATCATT
* ** * * ***
242756 T-TCAACG-TTATAAAA-TCATTTCAAGCGAGTAACTAGGCTTTTGAACATATGAGTGACTATAA
441 TAT-AA-GATTATAAAACT-ATTTAAAGTAAGTAACTTGGCTTTAGAAGGCATGAGTGACTATAA
*
242818 ATTGAC
503 ATAGAC
* * * * * * ** * *
242824 TTTTCGTATCAATAGATGGCTGTT-GTTTCATGTTTCCTAATACACACCTCCAATTATGATCTGT
1 -TTTCTTATCAATGGATGGCT-TTCGCTTCATATTTCCTAATGCAAAAATCAAATTATAATCTGT
* * * * *
242888 CTTATCCAAAAATG-AAAACATTTAGATTTAAAATCATTTA-TAAGACTT-TGAAACCA-TTTAA
64 TTTAACCAAAAATGAAAAAAATTCA-ATTTAAAATCATTTATTAAG--TTATAAAACCACTTTAA
* * * * *
242949 ATCAAGTAACTAGGTTTTCAAAGGCAT-A--G-C------TA-A-TTTGC-TGTCAATGGGTGG-
126 AGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC
* *** * * * *
243000 TATTCGCTTCACG-TTTCTGGTTCAAACAACAAATTATGATCTG-TTTAATGCAAAAGTGAAAAA
191 T-TTTGCTTCACGTTTTCCAATGCAAACAATAAATTATGAT-TGTTTTAA-CCAAAAAT-AAAAA
* * * * * * * * ** * *
243063 AATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTA-TGCTTTCAAA
252 AATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGT-CTTTCGAA
* * * * * * * *
243127 GGCATGAGTGACTATAAGTGGA-TTCTTCTAGTCAATTGATAGCTTTTGCTTCATGTTTCCCAAC
316 GGCATGAGTGACTATAAATAGACTT-TTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAT
* * * * * **
243191 ACAAACATCAAATTATGATCCT-TCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATCATTT
380 GCAAATAACAAATTATGAT-ATGTTTTAATCAAAAATTA-AAA-AAATTCAATTTAAAATCATTT
* * * * * * * **
243255 ATAA-AGTTATAAAACAACTTGAAGCGAA-TAA-TAAGGGTTTCA-AAGACAAAAGTGACTATAA
442 ATAAGA-TTATAAAACTATTTAAAG-TAAGTAACT-TGGCTTT-AGAAGGCATGAGTGACTATAA
*
243316 ATTGAC
503 ATAGAC
* ** * * * ** *
243322 TTTTCTTATCAACGGATGGCTTTCGCTTTGTGTTTCCCAATGTAAACAA-CAAACCATGATCTGT
1 -TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAA-AATCAAATTATAATCTGT
* ** * * * * *
243386 TTTGAGTAAATAT-AAAAAACATTCAAATTAAAATTATTTATAAAGTTATAAAACCAC-TAAAAG
64 TTTAACCAAAAATGAAAAAA-ATTCAATTTAAAATCATTTATTAAGTTATAAAACCACTTTAAAG
* ** * ** * * * *
243449 CAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATGGACTTTTTTTATCAA-GGAATAGCT
128 CAAGTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG-ATGGCT
* * * *
243513 TTTACTTCACG-TTTCCAAATACAAACAATAAATTATGATATGTTCTAA-CATAAAAGGAAAAAA
192 TTTGCTTCACGTTTTCC-AATGCAAACAATAAATTATGAT-TGTTTTAACCA-AAAA-TAAAAAA
* * * * * * * * ** *
243576 AATCTATTTAAAATCATTTATAAGATTGT-AAACCGTTTAAAGCAAGCAATTAGGCTTTCGAAGG
253 ATTCAATTTAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGTCTTTCGAAGG
* * *
243640 CATGAGTTACTAGAAATAGACTTTTCTTGTCAACGGA-GTGCTTTTGCTTCACGTTT
318 CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG-GCTTTTGCTTCACGTTT
243696 TGCAATACAA
Statistics
Matches: 3774, Mismatches: 828, Indels: 601
0.73 0.16 0.12
Matches are distributed among these distances:
465 15 0.00
466 42 0.01
467 123 0.03
468 17 0.00
469 9 0.00
470 13 0.00
471 1 0.00
473 6 0.00
475 1 0.00
476 2 0.00
477 2 0.00
478 1 0.00
480 11 0.00
481 18 0.00
482 5 0.00
484 6 0.00
485 1 0.00
486 9 0.00
487 72 0.02
488 2 0.00
492 30 0.01
493 44 0.01
494 12 0.00
496 7 0.00
497 40 0.01
498 293 0.08
499 77 0.02
500 53 0.01
501 21 0.01
502 122 0.03
503 22 0.01
504 117 0.03
505 68 0.02
506 173 0.05
507 37 0.01
508 373 0.10
509 317 0.08
510 680 0.18
511 399 0.11
512 214 0.06
513 64 0.02
514 113 0.03
515 126 0.03
516 16 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (508 bp):
TTTCTTATCAATGGATGGCTTTCGCTTCATATTTCCTAATGCAAAAATCAAATTATAATCTGTTT
TAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATTAAGTTATAAAACCACTTTAAAGCAA
GTAACAAGGCTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTG
CTTCACGTTTTCCAATGCAAACAATAAATTATGATTGTTTTAACCAAAAATAAAAAAATTCAATT
TAAAATTATTTATAAGATTATAAAACCATCTAAAGCGAGTAACAAGTCTTTCGAAGGCATGAGTG
ACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAATGCAAATAACAA
ATTATGATATGTTTTAATCAAAAATTAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAA
CTATTTAAAGTAAGTAACTTGGCTTTAGAAGGCATGAGTGACTATAAATAGAC
Found at i:242047 original size:339 final size:336
Alignment explanation
Indices: 238337--242290 Score: 2158
Period size: 339 Copynumber: 11.7 Consensus size: 336
238327 CAGAAACAAC
* * * *
238337 AAATTATGATA-TGTTTTAA-AAAAAATGAAAAGAAATTCAACTTAAAATCATTTATAAGATTAT
1 AAATTATGA-ACTGTTTTAACCAAAAATTAAAAAAAATT-AATTTAAAATCATTTATAAGA-TAT
* * * * ** *
238400 AAAACTACTTAATGTGAGTAACT-A-TAATTTCAAAGGCATGAGTGACTATAAATGGACTTTTCT
63 AAAACCACTTAAAGCGAGTAA-TAAGT-CTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCT
* * *** ** * * *
238463 TATCAATGGATGACTTTTGCTTTGCGTTTCCAAATGCAAAAAATAAATTATGATATGT-TTTAAC
126 TGTCAATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAACAAATTATG-T-TCTATTTAAC
* * * ** * *
238527 CAAAAAT---AAAAAA---AATTT--AA-C--GTAT-AAGATTATAAAACTACCTAAAGCGAGCA
189 AAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAGTGAGTA
** * * * * * **
238580 ATTATGTTTTCGAAGGCATAAGTGATTATAAATAGACTTTTCTTGTCAATGGATGACTTTTACTT
253 ACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-ATGGATGGCTTTCGCTT
* * * **
238645 CACGTTTCCCAATGAAAAGTT
317 CATG-TTCCTAATGCAAACAT
** ** * ** * * *
238666 CAAATTATGATTTGTTTTAAGTAAAAATCAAAAGCAATTCAATTTATAATTATTTCTAAGATCAT
1 -AAATTATGAACTGTTTTAACCAAAAATTAAAAAAAATT-AATTTAAAATCATTTATAAGAT-AT
* * * * * * * * * * *
238731 GAAAGCATTTCAAGTGAGCAGTTAGGCTTTCGTAA-GCATGAGTGACTCTAAAT-GAAC-TTTCT
63 AAAACCACTTAAAGCGAGTAATAAGTCTTTTG-AAGGCATGAGTGACTATAAATAG-ACTTTTCT
* * ** * * * * ** *
238793 TATCAATGAATTACTTTCGCTTTATGTTTAAC-CAGATG--AACATCAAATTATAATCTTTTTAA
126 TGTCAATGGATGGCTTTTGCTTCATGTTT--CTTA-ATGCAAACAACAAATTATGTTCTATTTAA
* * * * * **
238855 CCAAAAATGAAAAAAAGATCTAAATTTAAAATCATTTAGAAAGTTATAAAACTACTTAAAGCAAG
188 CAAAAAATGAAAAAAA-AT-TCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAG
* * *
238920 TAACAAGGTTTTCAAAAGG-ATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGACTTTC
251 TAACAAGGCTTTC-GAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTC-ATGGATGGCTTTC
* * * * *
238983 GCTTCAAGTTTTCTGATGCAAATAA
313 GCTTCATG-TTCCTAATGCAAACAT
* ** * * *
239008 AAAGTTA-CATTTAATTTTAACCAAAAATT-------ATTCAACTTAAAATTATTTATAAGATTA
1 AAA-TTATGAACT-GTTTTAACCAAAAATTAAAAAAAATT-AATTTAAAATCATTTATAAGA-TA
* * * * * * * *
239065 TTAAACCATTTAAAGCAAGTAACTAGGT-TTTCGAAGGTATGATTGACTATAAATAGACCTTTCT
62 TAAAACCACTTAAAGCGAGTAA-TAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCT
* * * *
239129 TGTCAATAGATGGCTTTTACTTCATGTTTGC-TAATGCAAATAACAAATTATGATCTATTTTAAC
126 TGTCAATGGATGGCTTTTGCTTCATGTTT-CTTAATGCAAACAACAAATTATGTTCTA-TTTAAC
* ** * * * * * * **
239193 CAAAGCTTAAAACAAA-TCAACTT-AAATCGTTTAT-GAGATTATAAAACTATTTAAAGAAAGTA
189 AAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAGTGAGTA
** * * * * * *
239255 ATTAGACTTT-GAATGGCATTAGTGACTATAAATAAACTTTTTTTTTTCAATGGATGGCTTTTGC
253 ACAAGGCTTTCGAA-GGCATGAGTGACTATAAATAGAC-TTTTCTTGTC-ATGGATGGCTTTCGC
* * *
239319 TTCATATGTT-CTGATGCAAGCAAC
315 TTC--ATGTTCCTAATGCAAAC-AT
** * * * * *
239343 AAATTACAAACTATTTAAACCAAAAATTAAAAAAACTCAAGTTAAAATCATTTATAAGATTATAA
1 AAATTATGAACTGTTTTAACCAAAAATTAAAAAAAATTAATTTAAAATCATTTATAAGA-TATAA
* * * * * * * * * * *
239408 AACCATTTAAAACAAGTAACT-AGGCTTCTGAAAGCATAAGTGACTAGAAGTGGACTGTTTTTTG
65 AACCACTTAAAGCGAGTAA-TAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACT-TTTCTTG
* * ** * * * * *
239472 TCAATGGATAGCTTTTGCTTCACGTTTCCCAATGCAAACAAAAAATTGTGATCTGTTTGAACCAA
128 TCAATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAACAAATTATGTTCTATTT-AACAAA
* * * * * * *
239537 AAA-GGAAAAAAATTCAATATAAAATTATTTATTAGGTTATCAAACCATTTAAAATGAGTAACAA
192 AAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAA
* * * *
239601 GGCTTTTGTAGGCATG-GTTGACTATAGATCGACTTTTCTTGTCAGTGGATGGCTTTCGCTTCAC
257 GGCTTTCGAAGGCATGAG-TGACTATAAATAGACTTTTCTTGTCA-TGGATGGCTTTCGCTTCA-
** * * *
239665 AATTCCTTATGCAAATAAC
319 TGTTCCTAATGCAAA-CAT
* * * * * *
239684 AAACTACGATCTGTTTT-ATCAAAACA-TGAAAAAAATTAAATTTAGAATCATTTATAAGAT-TA
1 AAATTATGAACTGTTTTAACCAAAA-ATTAAAAAAAATT-AATTTAAAATCATTTATAAGATATA
* * * * * * *
239746 TAAACCATTTAAAGTGAGCAACT-AGGCTTTTGAAGGCATGAGTTACTATAAATTGATTTTTCTT
64 -AAACCACTTAAAGCGAGTAA-TAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * * * ** ** * * ** * * *
239810 ATTAATGGATTGC-TTTACTTTACATTTCCCAATACAAATATGAAATTATGATTTTTTTTAACCA
127 GTCAATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAACAAATTATG-TTCTATTTAACAA
* * * * **
239874 AAGATG-AAAAAAATTCAATTTAAAATTACTTATTAGAG-TATAAAACCATTTAAAGCAAGTAAC
191 AAAATGAAAAAAAATTCAATTTAAAATCATTTA-TAAAGTTATAAAACCATTTAAAGTGAGTAAC
* * * * * * *
239937 ATGGCTTTCGAAGGGATAAGTGACTATAAGTTA-ACTTTTCTTGTTAATGGATAGCTTTTGCTTC
255 AAGGCTTTCGAAGGCATGAGTGACTATAA-ATAGACTTTTCTTG-TCATGGATGGCTTTCGCTTC
** * * *
240001 ATGTTTCCCGACGTAAACAAC
318 ATG-TTCCTAATGCAAAC-AT
* * *
240022 AAATTATTG-CCTGTTTTAACTAAAAATTAAAAAAATTTAATTTAAAATCATTTATAAGATTATA
1 AAATTA-TGAACTGTTTTAACCAAAAATTAAAAAAAATTAATTTAAAATCATTTATAAGA-TATA
* * * * * *
240086 AAACCACTTAAAGCAAGTAACTATG-CTTTTCAAGGCATGAGTGACTGTAAATGGTCTTTTCTTG
64 AAACCACTTAAAGCGAGTAA-TAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* * * * *
240150 TCAATGGAAGGCTTTTGCTTCACGTTTCTCAATG-AAAAAATCAAATTATTTTCTATTTTAACAA
128 TCAATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAA-CAAATTATGTTCTA-TTTAACAA
* * * *
240214 AAGATGGAAAAAGAAATTCAATTGAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGAGGAA
191 AAAAT-GAAAAA-AAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAA
* * * * * *
240279 TAATGCTTTCGAAGGCATGAGTGACTATAAATGGACTATTCTTGCCAATGGATGGCTTTCTCTTC
254 CAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-ATGGATGGCTTTCGCTTC
* * * *
240344 ATGTTTCTTAGTGTAAAAATT
318 ATG-TTCCTAATGCAAACA-T
* ** * * *
240365 AAATTAT-AATCTCTTTTAACCAAAAAGGAAAGAAAATTTAATTTAAAAAT-AGTTATAAGATTC
1 AAATTATGAA-CTGTTTTAACCAAAAATTAAA-AAAAATTAATTT-AAAATCATTTATAAGA-TA
** * ** * * * * * *
240428 TAAAACCTTTTAAAGCGAGCAATTGGACCTTTGAAGGAATGACTGACTATAAATAAACTTTTGTT
62 TAAAACCACTTAAAGCGAGTAATAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * ** * * *
240493 GTCAATAGATAGCTTTTGCTTGACATTTCTTGATATG--AACAATAAATTATGATTGGT-TTGAA
127 GTCAATGGATGGCTTTTGCTTCATGTTTCTT-A-ATGCAAACAACAAATTATG-TT-CTATTTAA
* * * * * * *
240555 CCAAAGATGAAAAGAAATTCAATTTAAAATTATTTAT-TAGACTATAAAACCATCTAAAGTGAGT
188 CAAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAGTGAGT
* * * * * * * * * *
240619 AACAAGTCTTTCGAAGGTATGAGTAACTATAGATAGACTTTACATGTCAATGGATAGATTTTGAT
252 AACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-ATGGATGGCTTTCGCT
* * * *
240684 TCACGTTTCCTAATGTAAATAAC
316 TCATG-TTCCTAATGCAAA-CAT
* * *
240707 AAATTATGATA-TGTTTTAATCAAAAATT-AAAACAATTCAACTTAAAATCATTTATAAGATCAT
1 AAATTATGA-ACTGTTTTAACCAAAAATTAAAAAAAATT-AATTTAAAATCATTTATAAGAT-AT
* * * * * * * *
240770 AAAACTATTTAAAGCAAGTAACT-TGACCTTAGAAGGCAAGAGAT-ACTATAAATAGAC-TTTCT
63 AAAACCACTTAAAGCGAGTAA-TAAGTCTTTTGAAGGCATGAG-TGACTATAAATAGACTTTTCT
* * ** * *
240832 TATCAATAGAT-GCTTTCACTTCATGTTTCCTAATGCAAA-AATCAAATTACT-TTCTGTTTTAC
126 TGTCAATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAA-CAAATTA-TGTTCT-ATTTA-
* * * **
240894 CCAAAAAA-G-AAAAAAATTCAATTT-GAATACATTTATTAAGTTATAAAACCACTTTAAACCGA
187 ACAAAAAATGAAAAAAAATTCAATTTAAAAT-CATTTATAAAGTTATAAAACCA-TTTAAAGTGA
* * * *
240956 GTAACAAGCCTTTCAAAGGCATGAGTGACCATAAATAGACTTTTCTTGTCAATGGATGGCTTTTG
250 GTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-ATGGATGGCTTTCG
*
241021 CTTCAGGTTTTCC-AATGCAAACAAT
314 CTTCA--TGTTCCTAATGCAAAC-AT
241046 AAATTATGAACTGTTTTAACCAAAAA-TAAAAAATAATTCAATTTAAAATCATTTATAAGATCAT
1 AAATTATGAACTGTTTTAACCAAAAATTAAAAAA-AATT-AATTTAAAATCATTTATAAGAT-AT
* * * * ** * * *
241110 AAAATCATTTAAAGCGAGCAAAAAGGT-TTTCAAAGACAT-ATGTAACTATAAATAGACTTTACT
63 AAAACCACTTAAAGCGAGTAATAA-GTCTTTTGAAGGCATGA-GTGACTATAAATAGACTTTTCT
* * * * *
241173 TGTAAATGGATTGCTTTTGCTTCATGTTT-TTCAATACAAACATCAAATTATGATCT-TTTAAGC
126 TGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AATGCAAACAACAAATTATGTTCTATTTAA-C
* * * ** *
241236 CATAAAT-AAAAAAAATTCAATTTAAAATCATGTAT-AAGTTATAAAA-C-TTCCTAAAACAGGG
189 AAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATT--T-AAAGTGAG
* * * * *
241297 TAACAAGGCTTTCAAAGGTAAGCGTGACTATAAATAGACTTTTCTTGTTAATGGATGGCTTTCGC
251 TAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTG-TCATGGATGGCTTTCGC
*
241362 TGCACAT-TTCCTAATGC-AACAAT
315 T--TCATGTTCCTAATGCAAAC-AT
* * * * * * *
241385 AAATTATGAGA-TGTTTTAACTAAAAATGAAAACAATTTAATTTAAAATCATTTTTGAAGTTAGA
1 AAATTATGA-ACTGTTTTAACCAAAAATTAAAAAAAATTAATTTAAAATCATTTAT-AAGATA-T
* * * * * * * *
241449 AAAACTACTTAAAGTGAGTTACAAGGCTTTTAAAGGCTTGAGTGACTATAAATAAACTTTTCTTG
63 AAAACCACTTAAAGCGAGTAATAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
* ** * * ** * * * * *
241514 TAAATGGATGGCTTTCACTTCATATTCCTCT-ATGCAAACATGAAATTATGATATGCTTGAACCA
128 TCAATGGATGGCTTTTGCTTCATGTTTCT-TAATGCAAACAACAAATTATGTTCT-ATTTAACAA
* * *
241578 GAAATGAAAAAAAAATT-AATTTAAAATCATTTATGAAGTTATAAAACCACTTAAAGTGAGTAAC
191 AAAATG-AAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAAC
** * * *
241642 AAAACTTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAGTGGATGGCTTTTGCTTCA
255 AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA-TGGATGGCTTTCGCTTCA
*
241707 TGTTCCTAGTGCAAACAT
319 TGTTCCTAATGCAAACAT
* * * *
241725 ACAACTATGAACTGTTTTAACAAAAAATTAAAAAAAATTGATTTAAAATCATTTGTAAGATATAA
1 A-AATTATGAACTGTTTTAACCAAAAATTAAAAAAAATTAATTTAAAATCATTTATAAGATATAA
* * * * * * **
241790 AATCACTTGAAGCGAGTAATAAGTCTTTGGAAGGGATGAGTGACTATAAATTGTC-TTTCTTACC
65 AACCACTTAAAGCGAGTAATAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTC
* *
241854 AATGGATGGCTTTTGCTTCATGTTTCTTAGTGCAAACAACTAATTATGTTCTATTCTAACAAAAA
130 AATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAACAAATTATGTTCTATT-TAACAAAAA
* * * * *
241919 ATTAAAAAATAATTCAATTTAAAATTATTTATAAAGTCATAAAACTATTTAAAGTGAGTAACTAG
194 ATGAAAAAA-AATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAG
* * * * * * * * *
241984 GTTTTCGAAGGTATAAATGACTAGAAATGGACTTTTCTTGTACATGGATCGCCTTCACTTCATGT
258 GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT-CATGGATGGCTTTCGCTTCATGT
** ** *
242049 TTTTCGGTACAAACAT
322 TCCT-AATGCAAACAT
** * * * * * *
242065 CAAATTATGTTCT-TTTTAACTAGAAA-TGAAAACAATTCAATTTAAAATCATCTATAAAGTTAT
1 -AAATTATGAACTGTTTTAACCAAAAATTAAAAAAAATT-AATTTAAAATCATTTAT-AAGATAT
* * * * *
242128 AAAACCTCTTAAAGCGGGTAACAAGAT-TTTCGAAGGCATGAGTGACTATAAATAGACTTGTCTT
63 AAAACCACTTAAAGCGAGTAATAAG-TCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTT
* * * * ** * * *
242192 GTCAATAGATGGCTTTCGTTTTACAT-TTTC-CAATGCATGCAAGAAATTACGATT-TGTTTTAA
127 GTCAATGGATGGCTTTTG-CTT-CATGTTTCTTAATGCAAACAACAAATTATG-TTCT-ATTTAA
*
242254 CCAAAAAT-AAAAAAAATT-AATTTAAAATCATTTATAA
188 CAAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAA
242291 GATCGAGCAA
Statistics
Matches: 2829, Mismatches: 613, Indels: 356
0.74 0.16 0.09
Matches are distributed among these distances:
328 2 0.00
329 13 0.00
330 59 0.02
331 75 0.03
332 15 0.01
333 55 0.02
334 62 0.02
335 70 0.02
336 48 0.02
337 40 0.01
338 313 0.11
339 546 0.19
340 480 0.17
341 412 0.15
342 360 0.13
343 148 0.05
344 115 0.04
345 12 0.00
346 4 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (336 bp):
AAATTATGAACTGTTTTAACCAAAAATTAAAAAAAATTAATTTAAAATCATTTATAAGATATAAA
ACCACTTAAAGCGAGTAATAAGTCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCA
ATGGATGGCTTTTGCTTCATGTTTCTTAATGCAAACAACAAATTATGTTCTATTTAACAAAAAAT
GAAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAGTGAGTAACAAGGCT
TTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCATGGATGGCTTTCGCTTCATGTTCCT
AATGCAAACAT
Found at i:244087 original size:776 final size:777
Alignment explanation
Indices: 242991--244545 Score: 2851
Period size: 776 Copynumber: 2.0 Consensus size: 777
242981 ATTTGCTGTC
*
242991 AATGGGTGGTATTCGCTTCACGTTTCTGGTTCAAACAACAAATTATGATCTGTTTAATGCAAAAG
1 AATGGGTGGTATTCGCTTCACGTTTCTAGTTCAAACAACAAATTATGATCTGTTTAATGCAAAAG
243056 TGAAAAAAATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTATGCT
66 TGAAAAAAATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTATGCT
*
243121 TTCAAAGGCATGAGTGACTATAAGTGGATTCTTCTAGTCAATTGATAGCTTTTGCTTCATGTTTC
131 TTCAAAGGCATGAGTGACTATAAGTGGATTCTTCTAGTCAATGGATAGCTTTTGCTTCATGTTTC
*
243186 CCAACACAAACATCAAATTATGATCCTTCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATC
196 CCAACACAAACATCAAATTATGATACTTCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATC
* *
243251 ATTTATAAAGTTATAAAACAACTTGAAGCGAATAATAAGGGTTTCAAAGACAAAAGTGACTATAA
261 ATTTATAAAGTTATAAAACAACTTAAAGCGAATAATAAGGGTTTCAAAGAAAAAAGTGACTATAA
243316 ATTGACTTTTCTTATCAACGGATGGCTTTCGCTTTGTGTTTCCCAATGTAAACAACAAACCATGA
326 ATTGACTTTTCTTATCAACGGATGGCTTTCGCTTTGTGTTTCCCAATGTAAACAACAAACCATGA
* *
243381 TCTGTTTTGAGTAAATATAAAAAACATTCAAATTAAAATTATTTATAAAGTTATAAAACCACTAA
391 TCTGTTTTGAGTAAATATAAAAAAAATTCAAATTAAAATCATTTATAAAGTTATAAAACCACTAA
* *
243446 AAGCAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATGGACTTTTTTTATCAAGGAATAG
456 AAGCAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATAGACTTTTCTTATCAAGGAATAG
* *
243511 CTTTTACTTCACGTTTCCAAATACAAACAATAAATTATGATATGTTCTAACATAAAA-GGAAAAA
521 CTTTTACTTCACATTTCCAAATACAAACAATAAATTATGATATGTTCTAACATAAAATGAAAAAA
* * *
243575 AAATCTATTTAAAATCATTTATAAGATTGTAAACCGTTTAAAGCAAGCAATTAGGCTTTCGAAGG
586 AAATCTATTTAAAATCATTTATAAGATTGTAAACCATTTAAAGCAAGCAATTAGGCTTTCAAAGA
* *
243640 CATGAGTTACTAGAAATAGACTTTTCTTGTCAACGGAGTGCTTTTGCTTCACGTTTTGCAATACA
651 CATGAGTTACTAGAAATAGACTTTTCTTGTCAACGGAGTGCGTTTGCTTCACGTTTTACAATACA
243705 AACATTCAAAACAAAAATTCAAAGATAAAAAAATTCAATTTAAAATTATTTATTAGATTATA
716 AACATTCAAAACAAAAATTCAAAGATAAAAAAATTCAATTTAAAATTATTTATTAGATTATA
243767 AATGGGTGGTATTCGCTTCACGTTTCTAGTTCAAACAACAAATTATGATCTGTTTAATGCAAAAG
1 AATGGGTGGTATTCGCTTCACGTTTCTAGTTCAAACAACAAATTATGATCTGTTTAATGCAAAAG
243832 TGAAAAAAATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTATGCT
66 TGAAAAAAATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTATGCT
* *
243897 TTCAAAGGTATGAGTGACTATAAGTGGATTTTTCTAGTCAATGGATAGCTTTTGCTTCATGTTTC
131 TTCAAAGGCATGAGTGACTATAAGTGGATTCTTCTAGTCAATGGATAGCTTTTGCTTCATGTTTC
*
243962 CCAACACAAACATCAAATTATGATATTTCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATC
196 CCAACACAAACATCAAATTATGATACTTCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATC
*
244027 ATTTATAAAGTTATAAAACAACTTAAAGCGAGTAATAAGGGTTTCAAAGAAAAAAGTGACTATAA
261 ATTTATAAAGTTATAAAACAACTTAAAGCGAATAATAAGGGTTTCAAAGAAAAAAGTGACTATAA
*
244092 ATTGACTTTTCTTATCAACGGATGGCTTTTGCTTTGTGTTTCCCAATGTAAACAACAAACCATGA
326 ATTGACTTTTCTTATCAACGGATGGCTTTCGCTTTGTGTTTCCCAATGTAAACAACAAACCATGA
*
244157 TCTGTTTTGAGTAAATATAAAAAAAATTCAAATTAAAATCATTTATAAAGTTATAAAAGCACTAA
391 TCTGTTTTGAGTAAATATAAAAAAAATTCAAATTAAAATCATTTATAAAGTTATAAAACCACTAA
*
244222 AAGCAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATAGACTTTTCTTATCAATGAATAG
456 AAGCAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATAGACTTTTCTTATCAAGGAATAG
*
244287 CTTTTACTTCACATTTCCAAATACAAACAATAAATTATGATATTTTCTAACATAAAATGAAAAAA
521 CTTTTACTTCACATTTCCAAATACAAACAATAAATTATGATATGTTCTAACATAAAATGAAAAAA
244352 AAATCTATTTAAAATCATTTATAAGATTGTAAACCATTTAAAGCAAGCAATTAGGCTTTCAAAGA
586 AAATCTATTTAAAATCATTTATAAGATTGTAAACCATTTAAAGCAAGCAATTAGGCTTTCAAAGA
* *
244417 CATGAGTTACTAGAAATGGACTTTTCTTGTCAACGGATTGCGTTTGCTTCACGTTTTACAATACA
651 CATGAGTTACTAGAAATAGACTTTTCTTGTCAACGGAGTGCGTTTGCTTCACGTTTTACAATACA
**
244482 AACATTCAAAATGAAAATTCAAAGATAAAAAAATTCAATTTAAAATTATTTATTAGATTATA
716 AACATTCAAAACAAAAATTCAAAGATAAAAAAATTCAATTTAAAATTATTTATTAGATTATA
244544 AA
1 AA
244546 ACCATTTAAA
Statistics
Matches: 750, Mismatches: 28, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
776 559 0.75
777 191 0.25
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (777 bp):
AATGGGTGGTATTCGCTTCACGTTTCTAGTTCAAACAACAAATTATGATCTGTTTAATGCAAAAG
TGAAAAAAATTCAATTGAAAATCATTAATATGATTTTAAAACCATTTAATGCAAACAACTATGCT
TTCAAAGGCATGAGTGACTATAAGTGGATTCTTCTAGTCAATGGATAGCTTTTGCTTCATGTTTC
CCAACACAAACATCAAATTATGATACTTCTTAGCCAAAAATTAGAAACAAATTCAATTTAAAATC
ATTTATAAAGTTATAAAACAACTTAAAGCGAATAATAAGGGTTTCAAAGAAAAAAGTGACTATAA
ATTGACTTTTCTTATCAACGGATGGCTTTCGCTTTGTGTTTCCCAATGTAAACAACAAACCATGA
TCTGTTTTGAGTAAATATAAAAAAAATTCAAATTAAAATCATTTATAAAGTTATAAAACCACTAA
AAGCAAGTAATAAGGCTTTTGAAGGCATAAGTGGTTATAAATAGACTTTTCTTATCAAGGAATAG
CTTTTACTTCACATTTCCAAATACAAACAATAAATTATGATATGTTCTAACATAAAATGAAAAAA
AAATCTATTTAAAATCATTTATAAGATTGTAAACCATTTAAAGCAAGCAATTAGGCTTTCAAAGA
CATGAGTTACTAGAAATAGACTTTTCTTGTCAACGGAGTGCGTTTGCTTCACGTTTTACAATACA
AACATTCAAAACAAAAATTCAAAGATAAAAAAATTCAATTTAAAATTATTTATTAGATTATA
Found at i:244352 original size:170 final size:170
Alignment explanation
Indices: 243909--244485 Score: 479
Period size: 170 Copynumber: 3.4 Consensus size: 170
243899 CAAAGGTATG
* * * *
243909 AGTGACTATAAGTGGATTTTTC-TAGTCAATGGATAGCTTTTGCTTCATGTTTCCCAACACAAAC
1 AGTGACTATAAATAGACTTTTCTTA-TCAATGGATAGCTTTTGCTTCATGTTTCCCAATACAAAC
* *
243973 -ATCAAATTATGATA-TTTCTTAGCCA-AAAATTAGAAACAAATTCAATTTAAAATCATTTATAA
65 AAT-AAATTATGATATTTTC-TA-ACATAAAA-T-GAAAAAAATTCAATTTAAAATCATTTATAA
* * *
244035 AGTTATAAAACAACTTAAAGCGAGTAATAAGGGTTTCAAAGAAAAA
125 AGTTATAAAACAACTAAAAGCAAGTAATAAGGCTTTCAAAGAAAAA
* * * ** **
244081 AGTGACTATAAATTGACTTTTCTTATCAACGGATGGCTTTTGCTTTGTGTTTCCCAATGTAAACA
1 AGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTGCTTCATGTTTCCCAATACAAACA
* ** * * * * *
244146 ACAAACCATGATCTGTTT-TGA-GTAAATATAAAAAAAATTCAAATTAAAATCATTTATAAAGTT
66 ATAAATTATGATAT-TTTCTAACATAAA-ATGAAAAAAATTCAATTTAAAATCATTTATAAAGTT
** ** *
244209 ATAAAAGC-ACTAAAAGCAAGTAATAAGGCTTTTGAAGGCATA
129 ATAAAA-CAACTAAAAGCAAGTAATAAGGCTTTCAAAGAAAAA
** * * ** *
244251 AGTGGTTATAAATAGACTTTTCTTATCAATGAATAGCTTTTACTTCACATTTCCAAATACAAACA
1 AGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTGCTTCATGTTTCCCAATACAAACA
* *
244316 ATAAATTATGATATTTTCTAACATAAAATGAAAAAAAAATCTATTTAAAATCATTTAT-AAGATT
66 ATAAATTATGATATTTTCTAACATAAAATG-AAAAAAATTCAATTTAAAATCATTTATAAAG-TT
* * * * * * * **
244380 GT-AAACCATTTAAAGCAAGCAATTAGGCTTTCAAAGACATG
129 ATAAAACAACTAAAAGCAAGTAATAAGGCTTTCAAAGAAAAA
* * * * * * * * **
244421 AGTTACTAGAAATGGACTTTTCTTGTCAACGGATTGCGTTTGCTTCACGTTTTACAATACAAACA
1 AGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTGCTTCATGTTTCCCAATACAAACA
244486 TTCAAAATGA
Statistics
Matches: 317, Mismatches: 76, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
169 4 0.01
170 210 0.66
171 36 0.11
172 61 0.19
173 3 0.01
174 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (170 bp):
AGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTGCTTCATGTTTCCCAATACAAACA
ATAAATTATGATATTTTCTAACATAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTAT
AAAACAACTAAAAGCAAGTAATAAGGCTTTCAAAGAAAAA
Found at i:246564 original size:17 final size:17
Alignment explanation
Indices: 246538--246597 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
246528 GAATCGGCTT
*
246538 GGAAGCAAAGAGAAAAA
1 GGAAGAAAAGAGAAAAA
246555 GGAAGAAAAGAG--AAA
1 GGAAGAAAAGAGAAAAA
*
246570 GAAAGAAAAGAGAAAGAA
1 GGAAGAAAAGAGAAA-AA
246588 GGAA-AAAAGA
1 GGAAGAAAAGA
246598 CAAGGAAGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 14 0.38
17 18 0.49
18 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.30, T:0.00
Consensus pattern (17 bp):
GGAAGAAAAGAGAAAAA
Found at i:246575 original size:15 final size:15
Alignment explanation
Indices: 246552--246593 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
246542 GCAAAGAGAA
*
246552 AAAGGAAGAAAAGAG
1 AAAGAAAGAAAAGAG
246567 AAAGAAAGAAAAGAG
1 AAAGAAAGAAAAGAG
*
246582 AAAGAAGGAAAA
1 AAAGAAAGAAAA
246594 AAGACAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAGAG
Found at i:248348 original size:44 final size:44
Alignment explanation
Indices: 248297--248384 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
248287 CAATGATGGT
248297 TAAATGATTTCTTGCATAAAAATCCTTGGTTTTATATGTAAGGC
1 TAAATGATTTCTTGCATAAAAATCCTTGGTTTTATATGTAAGGC
248341 TAAATGATTTCTTGCATAAAAATCCTTGGTTTTATATGTAAGGC
1 TAAATGATTTCTTGCATAAAAATCCTTGGTTTTATATGTAAGGC
248385 ACAAATGTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (44 bp):
TAAATGATTTCTTGCATAAAAATCCTTGGTTTTATATGTAAGGC
Found at i:264071 original size:223 final size:228
Alignment explanation
Indices: 263794--267661 Score: 803
Period size: 232 Copynumber: 16.9 Consensus size: 228
263784 CAATTCATTC
* * * *
263794 TCGATTTATAATCATTATAAGATTATAAACGAACTATATATATCATAGTATTGATGATAACATGT
1 TCGATTTATATTCATTATAAGATTATAAATGAA-T-TATATATCATAATATTGATGATAATATGT
* * * *
263859 AATGAAAATGATAATTTATTGATAAACCA-TT-AGGTTTTCAAAGGCATGAT-AAATGT-AAAT-
64 TATGAAAATTATAATTTATTGATAAACCATTTCAGGCTTTCAAAGCCATGATGAAAT-TAAAATG
* * * * *
263919 C-TTTTCTTATAAACGGAAAGCATCCACTTCAAGTTTCCTAATGCAAACATTTAATTATGACAGG
128 CATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTATGACACG
* *
263983 T-TCAACCAAGAATAACAAAGCTGCGT-A-TTTCTTTT
193 TATAAACCAAGAACAACAAAGCT--GTAATTTTCTTTT
* * * *
264018 T-GATTTATATTTCATATATAAAATTATAGATGAATTATATATCATAATATTGATGACAATATAT
1 TCGATTTATA-TTCAT-TATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGT
* ** ** *
264082 TATGAAAATTATAATTATTCATTAATAAAGTATTTCAGGCTTTCGCAGCCATGATGAACTTAAAA
64 TATGAAAATTATAA-T-TT-ATTGATAAACCATTTCAGGCTTTCAAAGCCATGATGAAATTAAAA
* * * * * * *
264147 TGCTATTTTCTTGTTAATAGATAGCATACACTTTATGTTTCCCAATGCAAACATCTAATTATGAT
126 TGC-ATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTATGAC
* ** *
264212 TCGTATAAAGGAAGAACAACAAAGCTTTAATTTTCTTTT
190 ACGTATAAACCAAGAACAACAAAGCTGTAATTTTCTTTT
264251 TCGATTTATAATT-ATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGT
1 TCGATTTAT-ATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGT
* * * * * *
264315 TATCAAAATTATAATTATTTATTGATAAACTA-TTCAAGCTTTTGAAAG-AATGAT-AAACTTTA
64 TATGAAAATTAT-A--ATTTATTGATAAACCATTTCAGGC-TTTCAAAGCCATGATGAAA-TTAA
* * * * * * * *
264377 AATGTTC-TTTTCTTGTCAA-TGAATAGCATTCACCTT-ATGTTTCCCAATGCGAACATCCAACT
124 AATG--CATTTTCTTATAAACAGAA-AGCATACA-CTTCAAGTTTCCCAATGCAAACATCTAATT
* * * * *
264439 ATGATAGGTTTTAAA-CAATAACAATAAA---G-------C--TT
185 ATGACACG-TATAAACCAAGAACAACAAAGCTGTAATTTTCTTTT
* * * * *
264471 TCGATTTATAATCATTTATAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGCT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * ** * *
264536 ATCAAAATGATAATTATTCATTGGTAAATAATTTCAAGGTTTTC-AAGGCATGAT-AAACTTAAA
65 ATGAAAATTATAA-T-TT-ATTGATAAACCATTTC-AGGCTTTCAAAGCCATGATGAAA-TTAAA
* * * * * * * * * * *
264599 ATGCTTTTTTGTTGTAAA-GGATAGTATCCACTACACA-TTTTCCAAGGCAAACATCCAATTATG
125 ATGC-ATTTTCTTATAAACAGAAAGCATACACTTCA-AGTTTCCCAATGCAAACATCTAATTATG
** * * * * * ** *
264662 GTAAGTTTTAACCAATAACAACAAAGCT-T--TTGAATGATAT
188 ACACGTATAAACCAAGAACAACAAAGCTGTAATT--TTCTTTT
* * * * * * *
264702 TCGTTTTAGAATCATTATAAGACTACAAATGACTTATATATCATAATATTGATGATAATATGTTG
1 TCGATTTATATTCATTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTA
* * * * * *
264767 TTAAAATTATAGTTATTCATTAATAAACCATTTCAAGCTTCCAAAGGCATGAT-AAACTTAAAAT
66 TGAAAATTATA---ATTTATTGATAAACCATTTCAGGCTTTCAAAGCCATGATGAAA-TTAAAAT
* * * * ** * * * * * * *
264831 GCTATATTATTGTCAATGGATAGCATCCACTTCACGTTTTCGAATGTAAACATAC-AATTATGAT
127 GC-ATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACAT-CTAATTATGAC
* * * *** * * *
264895 AAGTTTCAGGTAAGAACAA-TAAGCTTTCCA-TTTCTTTT
190 ACGTATAAACCAAGAACAACAAAGCTGT-AATTTTCTTTT
* * * * *
264933 TTGATGTATA-TCATTTATAAGATTATAAAAGAATTATATATTATAATATTGATAATAATATGTT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * * * ** *
264997 ATTAAAATTATAATTATTTATAT-AAAAACTATTTCAAGCTTTCGAAGATATAAT-AAATTTAAG
65 ATGAAAATTAT-A--ATTTAT-TGATAAACCATTTCAGGCTTTCAAAGCCATGATGAAA-TTAA-
* * * * ** * * *
265060 CTAT-TATTTTCTTATCAATAGAGTGCATTCACATT-ATA-TTTCACAATGCAAAGATGC-AATT
124 -AATGCATTTTCTTATAAACAGAAAGCATACAC-TTCA-AGTTTCCCAATGCAAACAT-CTAATT
* ** * * * *
265121 CTGA-TTGTTTTTAACCAA-AATCAACAAAGCAT-TCAA-TCTATTTT
185 ATGACACG-TATAAACCAAGAA-CAACAAAGC-TGT-AATTTTCTTTT
* * * *
265165 T-GATTTATAATCATTTATACGATTATAAATAAATTATATATCATAATATTGATGATAGTATGTT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * * *
265229 ATCAAAATGATAATTTTTCATTGATAAATCC-TTTCAAGCTTTCAAAGGCATAAT-AAACTTAAA
65 ATGAAAATTATAA--TTT-ATTGATAAA-CCATTTCAGGCTTTCAAAGCCATGATGAAA-TTAAA
** * ** ** * * *
265292 ATATTATTTTCTTGTCCATGGATAGCATCCACTTCATGTTTCCCCAATGCAAACATCTAATTATG
125 AT-GCATTTTCTTATAAACAGAAAGCATACACTTCAAGTTT-CCCAATGCAAACATCTAATTATG
* * * * *
265357 ATAGGTTTTAAA-TAATAA-AGACAAA---G-------C--TT
188 ACACG-TATAAACCAAGAACA-ACAAAGCTGTAATTTTCTTTT
* * * * * *
265386 TCAATTTATAATCACTTATAAGATTAAAAATGAATTACA-AACATAATATTGATGATAATATATT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * ** * * *
265450 ATCAAAATGATAATTATTCATTGATAAATAATTTTAAGGTTTTC-AAGGCATGAT-AAACTTAAA
65 ATGAAAATTATAA-T-TT-ATTGATAAACCA-TTTCAGGCTTTCAAAGCCATGATGAAA-TTAAA
* * * * * *
265513 ATGC-TCTTTCTTGTCAA-AGAATAGCATCCACTACATA-TTTCCCAATGCAAGCATCCAA-TAT
125 ATGCAT-TTTCTTATAAACAGAA-AGCATACACTTCA-AGTTTCCCAATGCAAACATCTAATTAT
** * * * * ** *
265574 GGTAGGTATTAACCAAGAATAACAAATCT-T--TTGATTGATAT
187 GACACGTATAAACCAAGAACAACAAAGCTGTAATT--TTCTTTT
* * * * * *
265615 TCGATTTACAATCATTATAAGATTACAAATGAATTATGTATCATAATATTAATGATAGTATGTTA
1 TCGATTTATATTCATTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTA
* * * * ** *
265680 TCAAAATGATAATTTTTCATTGATAAATCC-TTTCAAGCTTTCGAAGGAATGATGAACTTAAAAT
66 TGAAAATTATAA--TTT-ATTGATAAA-CCATTTCAGGCTTTCAAAGCCATGATGAAATTAAAAT
* * ** * * * * ** * * * **
265744 GCAATTTTCTTGTCAATGGATAGCATCCATTTCATGTTTTTCAATGCTAATATCCAATTATGATT
127 GC-ATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTATGACA
* * * ** * *
265809 GGTTTTAGGCAAGAACAACAAAGCTTTCCA-TTT-TTTT
191 CGTATAAACCAAGAACAACAAAGCTGT-AATTTTCTTTT
* * * * ** *
265846 T-GGTTTATA-TCATCTATAAGGTTATAAAAGAATTATATATCATAGTATTTCTGATAATATGCT
1 TCGATTTATATTCAT-TATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * ** ** *
265909 ATTAAAATTATTATTATTTATAT-ATAAACTATTTCAAGCTTTTGAAGGTATGAT-AGATTTAAA
65 ATGAAAATTA-TA--ATTTAT-TGATAAACCATTTCAGGCTTTCAAAGCCATGATGA-AATTAAA
* * * * * * * * * * *
265972 GTACTGTTTTTTTGTTAATAGATAGCATGA-ACTTCATA-TTTTCCAATGCAAAGATCCAATTAT
125 ATGC-ATTTTCTTATAAACAGAAAGCAT-ACACTTCA-AGTTTCCCAATGCAAACATCTAATTAT
* * * * * *
266035 GATA-GCATTTAACTAAAAACAATAAAGCAT-TGAA-TTT-TTTT
187 GACACGTA-TAAACCAAGAACAACAAAGC-TGT-AATTTTCTTTT
* * * * * * *
266076 TCAATTTATAATCATTTATACGATTATAAATGAATCAGACATCACAATATTGATGATAATATGTT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * * * *
266141 ATCAAAATAATTATTTTCCATTGATAAATCC-TTTCAAGCTTTCGAAAG-TATGAT-AAACTCAA
65 ATGAAAATTA-TAATTT--ATTGATAAA-CCATTTCAGGCTTTC-AAAGCCATGATGAAA-TTAA
* * * * * * * * *
266203 AATGCTATTTTCTTGTTAATAGATAGCATCCACTTCATA-TTTCCTAATCCGAACATCCAATTAT
124 AATGC-ATTTTCTTATAAACAGAAAGCATACACTTCA-AGTTTCCCAATGCAAACATCTAATTAT
* * * * * * *
266267 GATAGGTTTTAACTAATAACGACAAA---G-------C--TT
187 GACACGTATAAACCAAGAACAACAAAGCTGTAATTTTCTTTT
* * * * *
266297 TCGATTTATAATCATTTATAAGATTAAAAATGAATTACGA-ATCATAACATTGATGATAATATAT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTA-TATATCATAATATTGATGATAATATGT
* * * * * * * * *
266361 TATCAAAATGATCATTATTCATTGATAAA-TAGTTTCAAGGTTTTC-AAGGCTTAAT-AAACTTC
64 TATGAAAAT--T-ATAATTTATTGATAAACCA-TTTC-AGGCTTTCAAAGCCATGATGAAA-TTA
* * * * * * * * ** *
266423 AAATGCTCTTTTCTTGTCAA-GGAATAACATCCACTACATGTTTTTCAATGCAAACATCCAATTA
123 AAATGC-ATTTTCTTATAAACAGAA-AGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTA
** * * * * * ** *
266487 TGGTAGGTTTTAACCAAGAATAACAAAGCTTTCAA--TTGATAT
186 TGACACGTATAAACCAAGAACAACAAAGCTGT-AATTTTCTTTT
* * * * * *
266529 TCGATTTACAATCATCATAAGATTACAAATAAATTATATATCATAATATTGATGACAATATGTTA
1 TCGATTTATATTCATTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTA
* * * *
266594 TCAAAATTATAATTATTTATTAATAAACTATTTCAAGCTTTCAAAAG-CATGAT-AAACTTAAAA
66 TGAAAATTAT-A--ATTTATTGATAAACCATTTCAGGCTTTC-AAAGCCATGATGAAA-TTAAAA
*** ** ** * * *
266657 TGCTATTTTCTT-GCCAGTGAATAGCAT-CTGTTTCATGGTTT-TCAATACAAACAT-TCAATTA
126 TGC-ATTTTCTTATAAACAGAA-AGCATAC-ACTTCA-AGTTTCCCAATGCAAACATCT-AATTA
*** * * ** * *
266718 TGATGGGTTTTAGGCAAGAACAACAAAGCTTTCTATTTT-TTTT
186 TGACACGTATAAACCAAGAACAACAAAGCTGT-AATTTTCTTTT
* * * *
266761 GTTGATTTATA-TCATTTTTAACATTATAAAAG-ATTATATATCATAATATTGATGATAATATGT
1 -TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGT
* ** * * * *
266824 TATTAAAATTATAATTATATACATAAACCATTTCAAGCTTAT-GAAGGCATGAT-AAATTTAAAC
64 TATGAAAATTATAATT-TATTGATAAACCATTTCAGGCTT-TCAAAGCCATGATGAAA-TTAAAA
* * * * * * * * * *
266887 TACTATTTTCATGTCAATAGATAGGCATCCACTTCATGTTTTCCAATGCAGAA-ATCCAATTATG
126 TGC-ATTTTCTTATAAACAGA-AAGCATACACTTCAAGTTTCCCAATGCA-AACATCTAATTATG
* ** * * * * *
266951 ATAATTTTTAA-CAAAAACAACAAAGCATTTAACTTAT-TTTT
188 ACACGTATAAACCAAGAACAACAAAGC-TGTAA-TTTTCTTTT
* * * * * *
266992 T--ATTTATAATCATT-TATATATTGTAAGTGAATAATATATCACAATATTGATGATAATATGTT
1 TCGATTTATATTCATTATA-AGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * * * **
267054 ATCAAAATGATAATTTTTCATTGATAAATCC-TCTCAAGCTTTCGAAGGTATGAT-AAACTTAAA
65 ATGAAAATTATAA--TTT-ATTGATAAA-CCATTTCAGGCTTTCAAAGCCATGATGAAA-TTAAA
* * ** * * * * * * * *
267117 ATGCTATTTTCTTGTCAATGGATAGCATCCACTTGACGTTTCCC-AGGACAAACTTCCAATTCTG
125 ATGC-ATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATG-CAAACATCTAATTATG
* * * * *** *
267181 ATAAGTTTGAATTGAGAACAAGAAAGC----A--------T
188 ACACGTATAAACCAAGAACAACAAAGCTGTAATTTTCTTTT
* * * * * * * *
267210 TCAATTTATAATCATTTATACA-ACTATAAATGCATTATATGTTATAATATTGATAATTATATGT
1 TCGATTTATATTCA-TTATA-AGATTATAAATGAATTATATATCATAATATTGATGATAATATGT
* * * ** *
267274 TACT-ACAATGATAATTACTCATTGATAAATCATTTCTA-GCTTTTGAAGGCATGAT-AACATTA
64 TA-TGAAAATTATAATT--T-ATTGATAAACCATTTC-AGGCTTTCAAAGCCATGATGAA-ATTA
* * ** * * * * * * * *
267336 AAATGCTATTTTCTTGTTAATGGATAGCATCCACTTCATGTATCTCAATACAAATATCCAATTAT
123 AAATGC-ATTTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTAT
* * * * * * ** * * * *
267401 GATAAGTTTTAAGCAACAATGACAAAGTTTTTAA--TTCATGT
187 GACACGTATAAACCAAGAACAACAAAG-CTGTAATTTTCTTTT
* * * * *
267442 TCAATTTATAATCATTTATAAGATTATAAATGAATTATATATCACAATATTGATGACAATACGTT
1 TCGATTTATATTCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTT
* * * * * *
267507 ATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCCACAG-CATGAT-AAAGGTAAC
65 ATGAAAATTATAA-T-TT-ATTGATAAACCATTTCAGGCTTT-CAAAGCCATGATGAAA-TTAAA
* * ** * * * *
267570 ATGC-TCTTTCTTGCTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCTAATTGTG
125 ATGCAT-TTTCTT-ATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTATG
* * * * *
267634 ATAGGTTTCAACCAATAACAACAAAGCT
188 ACACGTATAAACCAAGAACAACAAAGCT
267662 TATGGTTTAT
Statistics
Matches: 2841, Mismatches: 565, Indels: 469
0.73 0.15 0.12
Matches are distributed among these distances:
217 5 0.00
218 20 0.01
219 35 0.01
220 169 0.06
221 411 0.14
222 58 0.02
223 48 0.02
224 8 0.00
225 17 0.01
226 11 0.00
227 4 0.00
228 65 0.02
229 152 0.05
230 435 0.15
231 549 0.19
232 658 0.23
233 168 0.06
234 25 0.01
235 2 0.00
236 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.38
Consensus pattern (228 bp):
TCGATTTATATTCATTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTA
TGAAAATTATAATTTATTGATAAACCATTTCAGGCTTTCAAAGCCATGATGAAATTAAAATGCAT
TTTCTTATAAACAGAAAGCATACACTTCAAGTTTCCCAATGCAAACATCTAATTATGACACGTAT
AAACCAAGAACAACAAAGCTGTAATTTTCTTTT
Found at i:264915 original size:451 final size:450
Alignment explanation
Indices: 263566--272487 Score: 6295
Period size: 451 Copynumber: 19.7 Consensus size: 450
263556 NNNTCTTTTT
* * * * * *
263566 ATTTATAATTATTTATGAGATTATAAATGAATTATATATCGTAATATTGATGAAAATATGTTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* * * * * * *
263631 AAAATGATAATTTTTCGTTGATAAGT-ATTTCAAGTTTTTGAAGGCATGGTAAATTTAAAATGCT
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
* * * * *
263695 CTTTTT-ATG-ACAATGGATAGCATCCACGTCATGTTTTCTATTGCAGACATCCAATTATTG-TA
131 -TTTTTCTTGTA-AA-GGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA-TGATA
* * * * *
263757 GGCTTTAGA-CAAAAACAACAAAGCTTTCAATTCATTCTCGATTTATAATCATTATAAGATTATA
192 GGTTTTA-ACCAAGAACAACAAAGCTTTGAA-TGATTTTCGATTTATAATCATTATAAGATTATA
* * * * * * *
263821 AACGAACTATATATATCATAGTATTGATGATAACATGTAATGAAAATGATAA-T-TT-ATTGATA
255 AATGAA-T-TATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATA
* * * * * *
263883 AACCA-TT-AGGTTTTCAAAGGCATGATAAA-TGT-AAA---TCTTTTCTTATAAACGGAAAGCA
318 AACCATTTCAAGCTTTCAAAGGCATGATAAACT-TAAAATGCTCTTTTCTTGTCAATGGATAGCA
* ** * * *
263941 TCCACTTCAAG-TTTCCTAATGCAAACATTTAATTATGACAGG-TTCAACCAAGAATAACAAAGC
382 TCCACTTCATGTTTTCC-AATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAA--
264004 TGCGTATTTCTTTTTG
444 -GC---TTTC-----G
* * * * * * * *
264020 ATTTATATTTCATATATAAAATTATAGATGAATTATATATCATAATATTGATGACAATATATTAT
1 ATTTATA-ATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTAT
* * * * * * *
264085 GAAAATTATAATTATTCATTAATAAAGT-ATTTC-AGGCTTTCGCAGCCATGATGAACTTAAAAT
65 CAAAATGATAATTATTCATTGATAAA-TAATTTCAAGGTTTTC-AAGGCATGATAAACTTAAAAT
* * * * *
264148 GCTATTTTCTTGTTAATA-GATAGCATACACTTTATGTTTCCCAATGCAAACATCTAATTATGAT
128 GCTTTTTTCTTG-TAA-AGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGAT
** * * ** ** *
264212 TCGTATAAAGGAAGAACAACAAAGCTTT-AATTTTCTTTTTCGATTTATAATTATTTATAAGATT
191 AGGTTTTAACCAAGAACAACAAAGCTTTGAA---TGATTTTCGATTTATAATCA-TTATAAGATT
* *
264276 ATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTTATTGAT
252 ATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAAT
* * * * * *
264341 AAACTA-TTCAAGCTTTTGAAA-GAATGATAAACTTTAAATGTTCTTTTCTTGTCAATGAATAGC
317 AAACCATTTCAAGC-TTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGC
* * * * * * *
264404 ATTCACCTT-ATGTTTCCCAATGCGAACATCCAACTATGATAGGTTTTAAACAATAACAATAAAG
381 ATCCA-CTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAG
264468 CTTTCG
445 CTTTCG
* *
264474 ATTTATAATCATTTATAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGCTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
*
264539 AAAATGATAATTATTCATTGGTAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
* * * ** * * *
264604 TTTTTGTTGTAAAGGATAGTATCCACTACACATTTTCCAAGGCAAACATCCAATTATGGTAAGTT
131 TTTTTCTTGTAAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTT
* * * * * *
264669 TTAACCAATAACAACAAAGCTTTTGAATGATATTCGTTTTAGAATCATTATAAGACTACAAATGA
196 TTAACCAAGAACAACAAAGC-TTTGAATGATTTTCGATTTATAATCATTATAAGATTATAAATGA
* * * *
264734 CTTATATATCATAATATTGATGATAATATGTTGTTAAAATTATAGTTATTCATTAATAAACCATT
260 ATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATT
* * * *
264799 TCAAGCTTCCAAAGGCATGATAAACTTAAAATGCTATATTATTGTCAATGGATAGCATCCACTTC
325 TCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTC
* * * * * * *** * *
264864 ACGTTTTCGAATGTAAACATACAATTATGATAAGTTTCAGGTAAGAACAA-TAAGCTTTCC
390 ATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCG
* * *
264924 ATTTCTTTTTTGATGTATATCATTTATAAGATTATAAAA-GAATTATATATTATAATATTGATAA
1 A-------TTT-A--TA-ATCATTTATAAGATTA-AAAATGAATTATAAATCATAATATTGATGA
* * * * * ** *
264988 TAATATGTTATTAAAATTATAATTATTTA-T-ATAAAAACTATTTCAA-GCTTTCGAAGATATAA
54 TAATATGTTATCAAAATGATAATTATTCATTGATAAATA--ATTTCAAGGTTTTC-AAGGCATGA
* ** * * * *
265050 TAAATTTAAGCT-ATTATTTTCTTATCAATA-GAGT-GCATTCACATT-AT-ATTTCACAATGCA
116 TAAACTTAAAATGCTT-TTTTCTTGT-AA-AGGA-TAGCATCCAC-TTCATGTTTTC-CAATGCA
* * * * * * * * *
265110 AAGATGCAATTCTGATTGTTTTTAACCAA-AATCAACAAAGCATTCAATCTATTTTTGATTTATA
175 AACATCCAATTATGATAGGTTTTAACCAAGAA-CAACAAAGCTTTGAAT-GATTTTCGATTTATA
* * * *
265174 ATCATTTATACGATTATAAATAAATTATATATCATAATATTGATGATAGTATGTTATCAAAATGA
238 ATCA-TTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTA
* * * ** *
265239 TAATTTTTCATTGATAAATCC-TTTCAAGCTTTCAAAGGCATAATAAACTTAAAATATTATTTTC
302 TAATTATTCATTAATAAA-CCATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTC
* * *
265303 TTGTCCATGGATAGCATCCACTTCATGTTTCCCCAATGCAAACATCTAATTATGATAGGTTTTAA
366 TTGTCAATGGATAGCATCCACTTCATGTTT-TCCAATGCAAACATCCAATTATGATAGGTTTTAA
** * *
265368 ATAATAA-AGACAAAGCTTTCA
430 CCAAGAACA-ACAAAGCTTTCG
* * *
265389 ATTTATAATCACTTATAAGATTAAAAATGAATTACAAA-CATAATATTGATGATAATATATTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
*
265453 AAAATGATAATTATTCATTGATAAATAATTTTAAGGTTTTCAAGGCATGATAAACTTAAAATGC-
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
* * * * * * *
265517 TCTTTCTTGTCAAAGAATAGCATCCACTACATATTTCCCAATGCAAGCATCCAA-TATGGTAGGT
131 TTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGT
* * * * * * *
265581 ATTAACCAAGAATAACAAATCTTTTGATTGATATTCGATTTACAATCATTATAAGATTACAAATG
195 TTTAACCAAGAACAACAAAGC-TTTGAATGATTTTCGATTTATAATCATTATAAGATTATAAATG
* * * * * *
265646 AATTATGTATCATAATATTAATGATAGTATGTTATCAAAATGATAATTTTTCATTGATAAATCC-
259 AATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAA-CCA
* * * ** *
265710 TTTCAAGCTTTCGAAGGAATGATGAACTTAAAATGCAATTTTCTTGTCAATGGATAGCATCCATT
323 TTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACT
* * * * ** *
265775 TCATGTTTTTCAATGCTAATATCCAATTATGATTGGTTTTAGGCAAGAACAACAAAGCTTTCC
388 TCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCG
* * * * * **
265838 ATTTTTTTTGGTTTATATCATCTATAAGGTTATAAAA-GAATTATATATCATAGTATTTCTGATA
1 A------TT--TATA-ATCATTTATAAGATTA-AAAATGAATTATAAATCATAATATTGATGATA
* * * * * * * * *
265902 ATATGCTATTAAAATTATTATTATTTATAT-ATAAACT-ATTTCAAGCTTTTGAAGGTATGATAG
56 ATATGTTATCAAAATGATAATTATTCAT-TGATAAA-TAATTTCAAGGTTTTCAAGGCATGATAA
* * * ** * *
265965 ATTTAAAGTACTGTTTTT-TTGTTAATA-GATAGCATGAACTTCATATTTTCCAATGCAAAGATC
119 ACTTAAAATGCT-TTTTTCTTG-TAA-AGGATAGCATCCACTTCATGTTTTCCAATGCAAACATC
** * * * * ** *
266028 CAATTATGATAGCATTTAACTAAAAACAATAAAGCATTGAATTTTTTTTCAATTTATAATCATTT
181 CAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTGAA-TGATTTTCGATTTATAATCA-TT
* * * * * * *
266093 ATACGATTATAAATGAATCAGACATCACAATATTGATGATAATATGTTATCAAAATAATTATT-T
244 ATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTAT
* * * * *
266157 TCCATTGATAAATCC-TTTCAAGCTTTCGAAA-GTATGATAAACTCAAAATGCTATTTTCTTGTT
309 T-CATTAATAAA-CCATTTCAAGCTTTC-AAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTC
* * * * * *
266220 AATAGATAGCATCCACTTCAT-ATTTCCTAATCCGAACATCCAATTATGATAGGTTTTAACTAAT
371 AATGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTATGATAGGTTTTAACCAAG
*
266284 AACGACAAAGCTTTCG
435 AACAACAAAGCTTTCG
** * *
266300 ATTTATAATCATTTATAAGATTAAAAATGAATTACGAATCATAACATTGATGATAATATATTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* * * * *
266365 AAAATGATCATTATTCATTGATAAATAGTTTCAAGGTTTTCAAGGCTTAATAAACTTCAAATGCT
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
* * * * * *
266430 CTTTTCTTGTCAAGGAATAACATCCACTACATGTTTTTCAATGCAAACATCCAATTATGGTAGGT
131 TTTTTCTTGTAAAGG-ATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGT
* * * * * * *
266495 TTTAACCAAGAATAACAAAGCTTTCAATTGATATTCGATTTACAATCATCATAAGATTACAAATA
195 TTTAACCAAGAACAACAAAGCTTTGAA-TGATTTTCGATTTATAATCATTATAAGATTATAAATG
* * *
266560 AATTATATATCATAATATTGATGACAATATGTTATCAAAATTATAATTATTTATTAATAAACTAT
259 AATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCAT
* * * * * ***
266625 TTCAAGCTTTCAAAAGCATGATAAACTTAAAATGCTATTTTCTTGCCAGTGAATAGCATCTGTTT
324 TTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTT
* * * ** *
266690 CATGGTTTT-CAATACAAACATTCAATTATGATGGGTTTTAGGCAAGAACAACAAAGCTTTCT
389 CAT-GTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCG
* * *
266752 ATTTTTTTTGTTGATTTATATCATTTTTAACATTATAAAA-G-ATTATATATCATAATATTGATG
1 A-------T-TT-A--TA-ATCATTTATAAGATTA-AAAATGAATTATAAATCATAATATTGATG
* * ** ** * * *
266815 ATAATATGTTATTAAAATTATAATTA-T-ATACATAAACCATTTCAAGCTTATGAAGGCATGATA
53 ATAATATGTTATCAAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATA
* * * * *
266878 AATTTAAACTACTATTTTCATGTCAATA-GATAGGCATCCACTTCATGTTTTCCAATGCAGAA-A
118 AACTTAAAATGCTTTTTTCTTGT-AA-AGGATA-GCATCCACTTCATGTTTTCCAATGCA-AACA
** * * **
266941 TCCAATTATGATAATTTTTAA-CAAAAACAACAAAGCATTT-AACTTATTTTTTATTTATAATCA
179 TCCAATTATGATAGGTTTTAACCAAGAACAACAAAGC-TTTGAA-TGATTTTCGATTTATAATCA
* * * * * *
267004 TT-TATATATTGTAAGTGAATAATATATCACAATATTGATGATAATATGTTATCAAAATGATAAT
242 TTATA-AGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAAT
* * * * * *
267068 TTTTCATTGATAAATCC-TCTCAAGCTTTCGAAGGTATGATAAACTTAAAATGCTATTTTCTTGT
306 TATTCATTAATAAA-CCATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGT
* * * * * * * * ***
267132 CAATGGATAGCATCCACTTGACG-TTTCCCAGGACAAACTTCCAATTCTGATAAGTTTGAATTGA
370 CAATGGATAGCATCCACTTCATGTTTTCCAATG-CAAACATCCAATTATGATAGGTTTTAACCAA
* * *
267196 GAACAAGAAAGCATTCA
434 GAACAACAAAGCTTTCG
* * * ** * * *
267213 ATTTATAATCATTTATACA-ACTATAAATGCATTATATGTTATAATATTGATAATTATATGTTA-
1 ATTTATAATCATTTATA-AGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTAT
* * * * * *
267276 CTACAATGATAATTACTCATTGATAAATCATTTCTAGCTTTTGAAGGCATGAT-AACATTAAAAT
65 C-AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAAC-TTAAAAT
* * * * *
267340 GCTATTTTCTTGTTAATGGATAGCATCCACTTCATG-TATCTCAATACAAATATCCAATTATGAT
128 GCTTTTTTCTTG-TAAAGGATAGCATCCACTTCATGTTTTC-CAATGCAAACATCCAATTATGAT
* * * ** * * * * *
267404 AAGTTTTAAGCAACAATGACAAAGTTTTTAATTCATGTTCAATTTATAATCATTTATAAGATTAT
191 AGGTTTTAACCAAGAACAACAAAGCTTTGAA-TGATTTTCGATTTATAATCA-TTATAAGATTAT
* * *
267469 AAATGAATTATATATCACAATATTGATGACAATACGTTATCAAAATTATAATTATTCATTAATAA
254 AAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAA
* ** *
267534 ACCATTTCAAGCTTTCCACA-GCATGATAAAGGTAACATGCTC-TTTCTTGCTCAATGGATAGCA
319 ACCATTTCAAGCTTT-CAAAGGCATGATAAACTTAAAATGCTCTTTTCTTG-TCAATGGATAGCA
* * * * *
267597 TCCACTTCATGTTTCCCAATGCAAACATCTAATTGTGATAGGTTTCAACCAATAACAACAAAGCT
382 TCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCT
267662 TAT-G
447 T-TCG
* * *
267666 GTTTATAATCAGTTT-TCAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATATTA
1 ATTTATAATCA-TTTAT-AAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTA
* ** * * * * *
267730 TCAAAATGATAACTATTTGTTGATAAACATTTTCAAGTTTTTCAAGGCATGATAAACTTAGAATA
64 TCAAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATG
* * * *** * * *
267795 CTCTTTTCTTGTCATAGGACAGCATCCACTTCATGTTTTCCAACATAAACATTCAATTATGGT-T
129 CTTTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAG
* * * * * * *
267859 GCTTTAACCAAGAAAAACAAAGTTTTCGATTGATTTTTGATTTATAATGATTATAAGATTATAAT
193 GTTTTAACCAAGAACAACAAAGCTTT-GAATGATTTTCGATTTATAATCATTATAAGATTATAAA
* * * *
267924 TGAATTATATATCATAATATTGATGACAATATGTTATCAAAGTTACAATTACTCATTAATAAACC
257 TGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACC
** * * * *
267989 ATTTCAAGCTTTTGAA-GCTATGATAAACTTAAAATACTCTTTTCATGTTAATGGATAACATCCA
322 ATTTCAAGCTTTCAAAGGC-ATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCA
* * * * ** *
268053 CCTCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCGATAACAACAAATATTGCG
386 CTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCG
* * * * * **
268118 AATTATAATCATTCATGAGATTATAAATGAATTACAAATCGA-AATATTGATGATGTTATGTTAT
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATC-ATAATATTGATGATAATATGTTAT
** * * * **
268182 CAAAATGATAATTATTCATTGATAAACCATGTCAAGCG-TTCCACA-ACATGATAAAGGTAAAAT
65 CAAAATGATAATTATTCATTGATAAATAATTTCAAG-GTTTTCA-AGGCATGATAAACTTAAAAT
* * * * * * * *
268245 G-ATCTTTCCTGCTCAATGGATAGCATCCACTCCATGTTTCCCAATGCAAACATCCCATTGTGAT
128 GCTTTTTTCTTG-T-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGAT
* * * *
268309 AGGTTTTAACCAATAACAAGAAAGC-TT-ACA--A-TTT-G-----TAATCATTTTCAAGATTAA
191 AGGTTTTAACCAAGAACAACAAAGCTTTGA-ATGATTTTCGATTTATAATCATTAT-AAGATTAT
* * * * * * * ** *
268363 AAATAAATTACAAACCATAATATTGATGATAATGTGTTATCAAAATCATAACTATTTGTTGATAA
254 AAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAA
* * * * * *
268428 A-CATTTTCAAGTTTTCCAATGCATGATAAACTTAGAATACTCTTTTCTTATC-ATAGGACT-GC
319 ACCA-TTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAAT-GGA-TAGC
** * * ** *
268490 ATCCACTTCACATTTTCTAATACAAACATCCAATTATG-TTTGCTTTAACCAAGAA-AATCAAAG
381 ATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAA-CAAAG
268553 CTTTCGATTG
445 CTTTC----G
* * * * * *
268563 ATTTTTGATTTATAATGATTATAAGATTATAATTGAATTATATATCATAATATTGATGACAATAT
1 A--TTT-A-TAATCAT--TTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATAT
* * * * * * ** ** *
268628 GTTATCAAAGTTACAACTACTCATTAATAAACCATTTCAA-ACTTTCGAAGCCATGATAAACTTA
60 GTTATCAAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTC-AAGGCATGATAAACTTA
* * * * * *
268692 AAATGCTCTTTTCATGTTAATGGATAGCATCCACCTCATGTTTTTCAATGCAAACATGCAATTAT
124 AAATGCTTTTTTCTTG-TAAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTAT
* * *
268757 GATAGGTTTTAACCGATAACAACAAA-C--------ATTGT-GATTTATAATCATTAATAAGATT
188 GATAGGTTTTAACCAAGAACAACAAAGCTTTGAATGATTTTCGATTTATAATCATT-ATAAGATT
* * * * * *
268812 ATAAATGAATTACCA-ATCAAAATATTGATGA-AGTTATGTTATCAAAATGATAATTATTCGTTG
252 ATAAATGAATTA-TATATCATAATATTGATGATA-ATATGTTATCAAAATTATAATTATTCATTA
* * ** ** *
268875 ATAAACCATGTCAAGCTTTCCATA-GCATGATTTAGGTAAAATGCTC-TTTCCTGCTCAATGGAT
315 ATAAACCATTTCAAGCTTT-CAAAGGCATGATAAACTTAAAATGCTCTTTTCTTG-TCAATGGAT
* * * * *
268938 AGCGTCCACTTCATGTTTTTCAATGCAAACATCCTATTGTGATAGGTTTTAACCAATAACAACAA
378 AGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAA
* *
269003 AGCTTACA
443 AGCTTTCG
* * * * *
269011 ACTTATAATCATTTTTAAGATTAAAAACGAATTACAAATCATAATATTGATGATAATATGCTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* ** * * * *
269076 AAAAT-ATTAACTATTTGTTGATAAATATTTTGAA-GTTTTCCAAGGCATGATAAACTTAGAATA
66 AAAATGA-TAATTATTCATTGATAAATAATTTCAAGGTTTT-CAAGGCATGATAAACTTAAAATG
* * * * * * ** * *
269139 CTCTTTTCTTGTCATAGGATAGTATCCATTTCAGGTTTCCCAACACAAACATCCAATTATGGT-T
129 CTTTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAG
* * * * * * * * * *
269203 GCTTTAACCAGGAAAAACAATGCTTTTGATTGATTTTTGATTTATACTAATTAGAAGATTATAAT
193 GTTTTAACCAAGAACAACAAAGC-TTTGAATGATTTTCGATTTATAATCATTATAAGATTATAAA
* * * * *
269268 TGAATTATATATCGTAACATTCATGATAATATGTTATCAAAATTACAATTATACATTAATAAACC
257 TGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACC
* * ** * ** * * **
269333 ATTTCAAGCATTCGAACCCATGATAAACTTAAAATACTCTTTTCAAGTTAATGGATTGGGTCCAC
322 ATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCA-
* * ** * *
269398 CTT-ATGTTTTCCAATGCAAACATGCAATTATCATAGGTTTTAACTGATAACAACAAA-CATTGC
386 CTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGC-TTTC
*
269461 A
450 G
* * * * * ** ** *
269462 ATTTATAACCATTCATAAGATTATAAATGAAGTACAAATCGGAATATTGATGATGTTGTGTTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* * *
269527 AAAATGATAATTATTCATTGATAAACT-AGTTCAA-GATTTCGAAGGTATGATAAACTTAAAATG
66 AAAATGATAATTATTCATTGATAAA-TAATTTCAAGGTTTTC-AAGGCATGATAAACTTAAAATG
** * * * ** * * * * * *
269590 CACTTTTCTTGTCAATGGATACCATCCATTTCACATTTTCCACTGCAAACTTTCAACTACGAAAG
129 CTTTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAG
* * * * * *
269655 GTTTTAAACAAGAACAATAAAGCTTTTGATTCA-TTTCAATTTATAATCATTATAGGATTATAAA
193 GTTTTAACCAAGAACAACAAAGC-TTTGAATGATTTTCGATTTATAATCATTATAAGATTATAAA
* * * * *
269719 TGAACTATATATATCATAATATTGGTAATAATATGTAATCAAAATGATAACTATTCATTAATAAA
257 TGAA-T-TATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAA
* * * ** *
269784 CCATTTCAAGCTTTCGAAGGAATGATAAACTAAAAATGCTCTTTTCTCAT-AATGGATAGCATCG
320 CCATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCC
* *** * * * * * *
269848 ACATCGCATTTCCCAATGCAAACATCAAATTATGATGGGTTTTAACTAAGAAAAAGTAAAGCTTT
385 ACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAA-CAAAGCTTT
269913 -G
449 CG
* ** * *
269914 AATTTAT-TTCTGATTTAAAATCAACTTTAAGGTCATAAATGAATCATATATCATAATATTGATG
1 -ATTTATAATC--ATTT---AT-AAGATT-A----A-AAATGAATTATAAATCATAATATTGATG
* * * * * * ** * * * *
269978 ATAATATGCTGTCAAAATTATAAGTATTTATTAATAAACCATTTTAAGTTTTTGAAGGCATTATA
53 ATAATATGTTATCAAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATA
* * * * * * * *
270043 AATTTAAAATGATCTTTTCTTATAAACTGATAGCATCCACTTCACGTTTTCCAACGTAAACATCC
118 AACTTAAAATGCTTTTTTCTTGTAAA-GGATAGCATCCACTTCATGTTTTCCAATGCAAACATCC
* * * * * * * * *
270108 AATTATAATAGGTTTTAACCAAGAATAACGAAGCTGTAGATTTATTTTTGGTTTATAATTATTTA
182 AATTATGATAGGTTTTAACCAAGAACAACAAAGCT-TTGAATGATTTTCGATTTATAATCA-TTA
* ** * * *
270173 TAGGATTATAAACAAATTATATATCATAATGTTGAT-ACCAATATGTTATCAAAATGATAATTAT
245 TAAGATTATAAATGAATTATATATCATAATATTGATGA-TAATATGTTATCAAAATTATAATTAT
*** ** * * *
270237 TCATTAA-AAGGTATTTCTGGTATTTGC--AGCCATGATAAACTTAAAATGCTATTTTCTTGTCA
309 TCATTAATAAACCATTTCAAG-CTTT-CAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCA
* ** * * *
270299 ATGGATAGCATCCATTTCACATTTTGCAATGCAAACATCCAATTATGGTAGGCTTTAACCAAGAA
372 ATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAA
* **
270364 TAACAAAGCTGTAGATTT
437 CAACAAAGCT-T---TCG
** * ** *
270382 ATTTTTGACTGATAATCATTTATAAGATTATGAACGAATTATATGTCATAATATTGATGACAATA
1 A---TT---T-ATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATA
* * * * * * *
270447 TGTTATCAAAATTATAATTATTCGTTGATAAAGT-TTTTC-AGGCTTTCGCAGTCATGATATACT
59 TGTTATCAAAATGATAATTATTCATTGATAAA-TAATTTCAAGGTTTTC-AAGGCATGATAAACT
* * *
270510 TAAAATG-TTATTTTCTTGTCAATGAATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAAT
122 TAAAATGCTT-TTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAAT
** * **
270574 TATGATTA-GTTTTAAAGAATAAGAAGAACAAAGCTTACAAGTTG-TTTTCGATTTATAATCATT
185 TATGA-TAGGTTTT--A-ACCAAGAACAACAAAGCTTTGAA--TGATTTTCGATTTATAATCA-T
* * * * * * *
270637 TATCAGATTATAAATAAATTATATATTATAATGTTGATGATAATCTGTTATTAAAATTGTAATTA
243 TATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTA
* * * * * * * * *
270702 TTTATTAATAAATCATTTCAAGATTTCGAAGGTATGATAAACTTTAAATGGTCTTTTTTTATCAA
308 TTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAA
* * * *
270767 TGGATAACATCTACTTCATG-TTTCCGAATGCAAACATCCAATTATGATAGGTTTTAAACAATAA
373 TGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTATGATAGGTTTTAACCAAGAA
** *
270831 TGACCAAGCTTTCG
437 CAACAAAGCTTTCG
* * *
270845 ATTTATAATCATTTATAAGATTAAAAATGAACTATAAATCATAATATTGATGAGAATATGTTCTC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* * * * *
270910 AAAATGATAATTATTCATTGAGAAATAATTTCAA-GCTTTCGTA-GCTATGATAAACTTAAAGTC
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTC-AAGGC-ATGATAAACTTAAAATG
* * * * * * *
270973 CTATTTTCTTGTCAATGGATTGCATCTACTTCACGTTTCCCGATTG-AAACATCCAATTAT-AGT
129 CTTTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTATGA-T
* * ** * * * ** * * *
271036 TGGTTTTCAGGAAGAACAACAAACCTTTCATTTTTTTTTGATTTGTAATCATTTATATGATTATA
191 AGGTTTTAACCAAGAACAACAAAGCTTTGAATGATTTTCGATTTATAATCA-TTATAAGATTATA
* *
271101 AATGAATTATATATCATAATATTGATGATAATAAGTTATCAAAATTATAATTGTGT-ATTAATAA
255 AATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTAT-TCATTAATAA
* * *
271165 ACTATTTCAAGATTTCGAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCAT-
319 ACCATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATC
* * * * * *
271229 CATTTCATGTTTTCCAATGCAAATATCCAATTATGATAGATTTTAATCAATAACAACAAAGCTGT
384 CACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTT
*
271294 CA
449 CG
* * * * * * *
271296 ATTCATAATCATTTATAAGATGAAAAATTAATTAGAAATCAAAATATTGGTGATAATATGTTATT
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
* ** * * * * *
271361 AAAATAATAATTATTCATTGATAAACCATTTTAAGCTTTCCAAGACATGATAAACTTAGAATGCT
66 AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
* ** * * * *
271426 CTTTTT-TTCTAAAAAATAGCATCCA-TTACACGTTTTCAAATGCAAACATCCAATGATGGTAGG
131 -TTTTTCTTGTAAAGGATAGCATCCACTT-CATGTTTTCCAATGCAAACATCCAATTATGATAGG
* * * * * *
271489 TTTTAACTAATAATAACAAAGCTTTCAATTGATTTTCAATTTATAATCGTTATAAGATTATAAAT
194 TTTTAACCAAGAACAACAAAGCTTTGAA-TGATTTTCGATTTATAATCATTATAAGATTATAAA-
*
271554 TAAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACC
257 TGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACC
* * * * * * *
271619 ATTTCAAGCTTTGAAAGGCATGATAAATTTAAAATGATATTTTCTTGTCTATGAATAGCGTCCA-
322 ATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCAC
* **
271683 --C------T----T-CAAACATCTAATTATGATAGGTTTTAAGTAAGAACAACAAAGTTGTTGA
387 TTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAA------G-
* *
271735 TTTATGTTTG
445 ---CT-TTCG
* * * * * *
271745 ATTTATAATTATTTATAATATTATAAATAAACTATATATCATAATATTGATGATAATATGTTATC
1 ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
** * * * * * **
271810 AAAACCATAAGTATTCATTAATAAACT-GTTTCAAGCTTTTGAAGGCATGACCAACTTAAAATGC
66 AAAATGATAATTATTCATTGATAAA-TAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGC
* * ** * * *
271874 TCTTTCCTTCCCATTA-GATAGCATTCACTTCATG-TTTCCTAATGTAAACATCCAATTATGATA
130 TTTTTTCTT-GTA-AAGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTATGATA
* * * * * * *
271937 GGTTTTAACCAATAATAATAAAAC--T---TCACTTT--A-TTAGT--T--TTAT-A-ATTAAAA
192 GGTTTTAACCAAGAACAACAAAGCTTTGAATGATTTTCGATTTA-TAATCATTATAAGATTATAA
* * * * * **
271988 ATAAATTACAAATCATAATATTGATGATAATATGTTATCGAAATGATAATTATTCATTGGTAAAC
256 ATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAAC
* * ** * * * * * *
272053 TATTTCAAGCTTTCCATTGCATGATAAACTTAGAATAC-CATTTCTTGTAAAAGCATAGCATCCA
321 CATTTCAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCA
** * * * * *
272117 CAACACG-TTTCCTAATGCAAACATCCAATTATGGTAGGTTTTGACCTAGGACAACAAAGCTTTC
386 CTTCATGTTTTCC-AATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTC
272181 G
450 G
* * *
272182 ATTGAT-TTGCAATTTATAAGCACTATAAGATTATAAATGAATTATATATCATAATATTGATGAT
1 ATTTATAAT-C-ATTTATAAG-A-T-T---A--A-AAATGAATTATAAATCATAATATTGATGAT
* * * ** * * **
272246 AATATGTTATCAAAATTAGAATTATTCATTAATAAACCATTCCAAGCTTTTCAAATCATGATAAA
55 AATATGTTATCAAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAA
* * * * * * * * * *
272311 CGTAAAATACTATTTTCTAGTCAATGGATAGTATCCACTGCACGTTTTTCAATGCAAAGATCCAA
120 CTTAAAATGCTTTTTTCTTGT-AAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAA
* * ** * * * * * ** *
272376 GTATGATAAGTTGAAACCAAGAATAAGAAAGCATTCGATTTATGCTCAATTTATAATCATTTATA
184 TTATGATAGGTTTTAACCAAGAACAACAAAGC-TTTGAATGATTTTCGATTTATAATCA-TTATA
* * * *
272441 AGAATATAAATGAATTATAAATCGTAATATTGATGATAATATATTAT
247 AGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTAT
272488 AAGAAACCGT
Statistics
Matches: 6658, Mismatches: 1444, Indels: 724
0.75 0.16 0.08
Matches are distributed among these distances:
434 19 0.00
435 87 0.01
436 8 0.00
437 10 0.00
438 48 0.01
439 2 0.00
440 4 0.00
441 52 0.01
442 274 0.04
443 5 0.00
444 12 0.00
445 4 0.00
446 6 0.00
447 153 0.02
448 49 0.01
449 179 0.03
450 427 0.06
451 1221 0.18
452 853 0.13
453 671 0.10
454 207 0.03
455 105 0.02
456 278 0.04
457 37 0.01
458 51 0.01
459 100 0.02
460 78 0.01
461 394 0.06
462 330 0.05
463 356 0.05
464 349 0.05
465 56 0.01
466 117 0.02
467 98 0.01
468 1 0.00
469 4 0.00
470 4 0.00
473 5 0.00
474 2 0.00
475 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (450 bp):
ATTTATAATCATTTATAAGATTAAAAATGAATTATAAATCATAATATTGATGATAATATGTTATC
AAAATGATAATTATTCATTGATAAATAATTTCAAGGTTTTCAAGGCATGATAAACTTAAAATGCT
TTTTTCTTGTAAAGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGATAGGTT
TTAACCAAGAACAACAAAGCTTTGAATGATTTTCGATTTATAATCATTATAAGATTATAAATGAA
TTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTT
CAAGCTTTCAAAGGCATGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCA
TGTTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTCG
Found at i:266481 original size:221 final size:220
Alignment explanation
Indices: 264249--272487 Score: 5323
Period size: 221 Copynumber: 36.3 Consensus size: 220
264239 TAATTTTCTT
*
264249 TTTCGATTTATAATTATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* * * * * *
264314 TTATCAAAATTATAATTATTTATTGATAAACTA-TTCAAGCTTTTGAAAGAATGATAAACTTTAA
66 TTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATGATAAACTTAAA
* * * * * *
264378 ATGTTCTTTTCTTGTCAATGAATAGCATTCACCTT-ATGTTTCCCAATGCGAACATCCAACTATG
130 ATGCTCTTTTCTTGTCAATGGATAGCATCCA-CTTCATGTTTTCCAATGCAAACATCCAATTATG
* *
264442 ATAGGTTTTAAACAATAACAATAAAGC
194 ATAGGTTTTAACCAATAACAACAAAGC
* * *
264469 TTTCGATTTATAATCATTTATAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* *
264534 CTATCAAAATGATAATTATTCATTGGTAAA-TAATTTCAAGGTTTTCAAGGCATGATAAACTTAA
66 TTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAA-GTTTTCAAGGCATGATAAACTTAA
* * * * * ** *
264598 AATGCTTTTTTGTTGT-AAAGGATAGTATCCACTACACATTTTCCAAGGCAAACATCCAATTATG
129 AATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATG
* *
264662 GTAAGTTTTAACCAATAACAACAAAGC
194 ATAGGTTTTAACCAATAACAACAAAGC
* * * * *
264689 TTTTGAATGATATTCGTTTTAGAATCA-TTATAAGACTACAAATGACTTATATATCATAATATTG
1 ----------T-TTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * * * * *
264753 ATGATAATATGTTGTTAAAATTATAGTTATTCATTAATAAACCATTTCAAGCTTCCAAAGGCATG
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATG
* * * * * *
264818 ATAAACTTAAAATGCTATATTATTGTCAATGGATAGCATCCACTTCACGTTTTCGAATGTAAACA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
* * * *** * *
264883 TACAATTATGATAAGTTTCAGGTAAGAACAA-TAAGC
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * *
264919 TTTCCATTTCTTTTTTGATGTATATCATTTATAAGATTATAAAAGAATTATATATTATAATATTG
1 TTTCGA-------TTT-A--TA-ATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * * * **
264984 ATAATAATATGTTATTAAAATTATAATTATTTATAT-AAAAACTATTTCAAGCTTTCGAAGATAT
55 ATGATAATATGTTATCAAAATGATAATTATTCAT-TGATAAACTATTTCAAGTTTTC-AAGGCAT
* * ** ** * * * * *
265048 AATAAATTTAAGCTATTATTTTCTTATCAATAGAGT-GCATTCACATT-AT-ATTTCACAATGCA
118 GATAAACTTAAAATGCTCTTTTCTTGTCAATGGA-TAGCATCCAC-TTCATGTTTTC-CAATGCA
* * * * *
265110 AAGATGCAATTCTGATTGTTTTTAACCAA-AATCAACAAAGC
180 AACATCCAATTATGATAGGTTTTAACCAATAA-CAACAAAGC
* *
265151 ATTCAATCTATTTTTGATTTATAATCATTTATACGATTATAAATAAATTATATATCATAATATTG
1 -TT---TC-------GATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * *
265216 ATGATAGTATGTTATCAAAATGATAATTTTTCATTGATAAA-TCCTTTCAAGCTTTCAAAGGCAT
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAAGTTTTC-AAGGCAT
* ** * * *
265280 AATAAACTTAAAATATTATTTTCTTGTCCATGGATAGCATCCACTTCATGTTTCCCCAATGCAAA
118 GATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTT-TCCAATGCAAA
* **
265345 CATCTAATTATGATAGGTTTTAAATAATAA-AGACAAAGC
182 CATCCAATTATGATAGGTTTTAACCAATAACA-ACAAAGC
* * * * * *
265384 TTTCAATTTATAATCACTTATAAGATTAAAAATGAATTACA-AACATAATATTGATGATAATATA
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
*
265448 TTATCAAAATGATAATTATTCATTGATAAA-TAATTTTAAGGTTTTCAAGGCATGATAAACTTAA
66 TTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAA-GTTTTCAAGGCATGATAAACTTAA
* * * * * *
265512 AATGCTC-TTTCTTGTCAAAGAATAGCATCCACTACATATTTCCCAATGCAAGCATCCAA-TATG
129 AATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATG
* * * * *
265575 GTAGGTATTAACCAAGAATAACAAATC
194 ATAGGTTTTAACCAATAACAACAAAGC
* * * * *
265602 TTTTGATTGATATTCGATTTACAATCATTATAAGATTACAAATGAATTATGTATCATAATATTAA
1 TTTCGATT--TA-T--A-AT-C-AT--TTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * *
265667 TGATAGTATGTTATCAAAATGATAATTTTTCATTGATAAA-TCCTTTCAAGCTTTCGAAGGAATG
56 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAAGTTTTC-AAGGCATG
* ** * * * *
265731 ATGAACTTAAAATGCAATTTTCTTGTCAATGGATAGCATCCATTTCATGTTTTTCAATGCTAATA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
* ** *
265796 TCCAATTATGATTGGTTTTAGGCAAGAACAACAAAGC
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * **
265833 TTTCCATTTTTTTTGGTTTATATCATCTATAAGGTTATAAAAGAATTATATATCATAGTATTTCT
1 TTTCGA------TT--TATA-ATCATTTATAAGATTATAAATGAATTATATATCATAATATTGAT
* * * * * * *
265898 GATAATATGCTATTAAAATTATTATTATTTATAT-ATAAACTATTTCAAGCTTTTGAAGGTATGA
57 GATAATATGTTATCAAAATGATAATTATTCAT-TGATAAACTATTTCAAG-TTTTCAAGGCATGA
* * * * * * * * ** * *
265962 TAGATTTAAAGTACTGTTTTTTTGTTAATAGATAGCATGAACTTCATATTTTCCAATGCAAAGAT
120 TAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACAT
** * * *
266027 CCAATTATGATAGCATTTAACTAAAAACAATAAAGC
185 CCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * *
266063 ATTGAATTTTTTTTCAATTTATAATCATTTATACGATTATAAATGAATCAGACATCACAATATTG
1 -----------TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * * *
266128 ATGATAATATGTTATCAAAATAATTATT-TTCCATTGATAAA-TCCTTTCAAGCTTTCGAAAGTA
55 ATGATAATATGTTATCAAAATGATAATTATT-CATTGATAAACT-ATTTCAAGTTTTC-AAGGCA
* * * * * * *
266191 TGATAAACTCAAAATGCTATTTTCTTGTTAATAGATAGCATCCACTTCAT-ATTTCCTAATCCGA
117 TGATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC-AATGCAA
* *
266255 ACATCCAATTATGATAGGTTTTAACTAATAACGACAAAGC
181 ACATCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * *
266295 TTTCGATTTATAATCATTTATAAGATTAAAAATGAATTACGA-ATCATAACATTGATGATAATAT
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTA-TATATCATAATATTGATGATAATAT
* * * * *
266359 ATTATCAAAATGATCATTATTCATTGATAAA-TAGTTTCAAGGTTTTCAAGGCTTAATAAACTTC
65 GTTATCAAAATGATAATTATTCATTGATAAACTA-TTTCAA-GTTTTCAAGGCATGATAAACTTA
* * *
266423 AAATGCTCTTTTCTTGTCAA-GGAATAACATCCACTACATGTTTTTCAATGCAAACATCCAATTA
128 AAATGCTCTTTTCTTGTCAATGG-ATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA
* * *
266487 TGGTAGGTTTTAACCAAGAATAACAAAGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
* * *
266516 TTTCAATTGATATTCGATTTACAATCA-TCATAAGATTACAAATAAATTATATATCATAATATTG
1 TTTC----GAT-TT--A--T--AATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * * *
266580 ATGACAATATGTTATCAAAATTATAATTATTTATTAATAAACTATTTCAAGCTTTCAAAAGCATG
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATG
* * * * *** *
266645 ATAAACTTAAAATGCTATTTTCTTGCCAGTGAATAGCATCTGTTTCATGGTTTT-CAATACAAAC
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCAT-GTTTTCCAATGCAAAC
* * ** *
266709 ATTCAATTATGATGGGTTTTAGGCAAGAACAACAAAGC
183 ATCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * *
266747 TTTCTATTTTTTTTGTTGATTTATATCATTTTTAACATTATAAAAG-ATTATATATCATAATATT
1 TTTCGA-------T-TT-A--TA-ATCATTTATAAGATTATAAATGAATTATATATCATAATATT
* * ** * * *
266811 GATGATAATATGTTATTAAAATTATAATTA-T-ATACATAAACCATTTCAAGCTTATGAAGGCAT
54 GATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCAT
* * * * * *
266874 GATAAATTTAAACTACTATTTTCATGTCAATAGATAGGCATCCACTTCATGTTTTCCAATGCAGA
118 GATAAACTTAAAATGCTCTTTTCTTGTCAATGGATA-GCATCCACTTCATGTTTTCCAATGCA-A
** *
266939 A-ATCCAATTATGATAATTTTTAA-CAAAAACAACAAAGC
181 ACATCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * *
266977 ATTTAACTTATTTTTTATTTATAATCATTTAT-ATATTGTAAGTGAATAATATATCACAATATTG
1 -TTT--C--------GATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * *
267041 ATGATAATATGTTATCAAAATGATAATTTTTCATTGATAAA-TCCTCTCAAGCTTTCGAAGGTAT
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAAGTTTTC-AAGGCAT
* * * * *
267105 GATAAACTTAAAATGCTATTTTCTTGTCAATGGATAGCATCCACTTGACG-TTTCCCAGGACAAA
118 GATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATG-CAAA
* * * * *** * *
267169 CTTCCAATTCTGATAAGTTTGAATTGAGAACAAGAAAGC
182 CATCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * *
267208 ATTCAATTTATAATCATTTATACA-ACTATAAATGCATTATATGTTATAATATTGATAATTATAT
1 TTTCGATTTATAATCATTTATA-AGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* * * *
267272 GTTA-CTACAATGATAATTACTCATTGATAAA-TCATTTCTAGCTTTTGAAGGCATGAT-AACAT
65 GTTATC-AAAATGATAATTATTCATTGATAAACT-ATTTCAAG-TTTTCAAGGCATGATAAAC-T
* * * * *
267334 TAAAATGCTATTTTCTTGTTAATGGATAGCATCCACTTCATG-TATCTCAATACAAATATCCAAT
126 TAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTC-CAATGCAAACATCCAAT
* * *
267398 TATGATAAGTTTTAAGCAACAATGACAA-AGTTTTTAATTC
190 TATGATAGGTTTTAA-C--CAATAACAACA------AA-GC
* * *
267438 ATGTTCAATTTATAATCATTTATAAGATTATAAATGAATTATATATCACAATATTGATGACAATA
1 -T-TTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATA
* * * * * **
267503 CGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCCACA-GCATGATAAAGGT
64 TGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCA-AGGCATGATAAACTT
* * *
267567 AACATGCTC-TTTCTTGCTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCTAATT
127 AAAATGCTCTTTTCTTG-TCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATT
* *
267631 GTGATAGGTTTCAACCAATAACAACAAAGC
191 ATGATAGGTTTTAACCAATAACAACAAAGC
* * * *
267661 TTAT-GGTTTATAATCAGTTT-TCAAGATTAAAAATGAATTACAAATCATAATATTGATGATAAT
1 TT-TCGATTTATAATCA-TTTAT-AAGATTATAAATGAATTATATATCATAATATTGATGATAAT
* * **
267724 ATATTATCAAAATGATAACTATTTGTTGATAAAC-ATTTTCAAGTTTTTCAAGGCATGATAAACT
63 ATGTTATCAAAATGATAATTATTCATTGATAAACTA-TTTCAAG-TTTTCAAGGCATGATAAACT
* * * *** *
267788 TAGAATACTCTTTTCTTGTC-ATAGGACAGCATCCACTTCATGTTTTCCAACATAAACATTCAAT
126 TAAAATGCTCTTTTCTTGTCAAT-GGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAAT
* * * * * *
267852 TATGGT-TGCTTTAACCAAGAAAAACAAAGT
190 TATGATAGGTTTTAACCAATAACAACAAAGC
* * *
267882 TTTCGATTGATTTTTGATTTATAATGATTATAAGATTATAATTGAATTATATATCATAATATTGA
1 TTTC----GA--TTT-A-TAATCAT--TTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * * * * *
267947 TGACAATATGTTATCAAAGTTACAATTACTCATTAATAAACCATTTCAAGCTTTTGAA-GCTATG
56 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGC-ATG
* * * * *
268011 ATAAACTTAAAATACTCTTTTCATGTTAATGGATAACATCCACCTCATGTTTTCCAATGCAAACA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
* * **
268076 TGCAATTATGATAGGTTTTAACCGATAACAACAAATA
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * **
268113 TTGCGAATTATAATCATTCATGAGATTATAAATGAATTACAAATCGA-AATATTGATGATGTTAT
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATC-ATAATATTGATGATAATAT
* * * * * **
268177 GTTATCAAAATGATAATTATTCATTGATAAACCATGTCAAGCGTTCCACA-ACATGATAAAGGTA
65 GTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCA-AGGCATGATAAACTTA
* * * * * *
268241 AAATGATC-TTTCCTGCTCAATGGATAGCATCCACTCCATGTTTCCCAATGCAAACATCCCATTG
128 AAATGCTCTTTTCTTG-TCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA
*
268305 TGATAGGTTTTAACCAATAACAAGAAAGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * * *
268334 TTACAATTTGTAATCATTT-TCAAGATTAAAAATAAATTACAAACCATAATATTGATGATAATGT
1 TTTCGATTTATAATCATTTAT-AAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* * ** *
268398 GTTATCAAAATCATAACTATTTGTTGATAAAC-ATTTTCAAGTTTTCCAATGCATGATAAACTTA
65 GTTATCAAAATGATAATTATTCATTGATAAACTA-TTTCAAGTTTT-CAAGGCATGATAAACTTA
* * * ** * *
268462 GAATACTCTTTTCTTATC-ATAGGACT-GCATCCACTTCACATTTTCTAATACAAACATCCAATT
128 AAATGCTCTTTTCTTGTCAAT-GGA-TAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATT
** * *
268525 ATG-TTTGCTTTAACCAAGAA-AATCAAAGC
191 ATGATAGGTTTTAACCAATAACAA-CAAAGC
* * *
268554 TTTCGATTGATTTTTGATTTATAATGATTATAAGATTATAATTGAATTATATATCATAATATTGA
1 TTTC----GA--TTT-A-TAATCAT--TTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * * * * * ** *
268619 TGACAATATGTTATCAAAGTTACAACTACTCATTAATAAACCATTTCAAACTTTCGAAGCCATGA
56 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATGA
* * * *
268684 TAAACTTAAAATGCTCTTTTCATGTTAATGGATAGCATCCACCTCATGTTTTTCAATGCAAACAT
120 TAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACAT
* *
268749 GCAATTATGATAGGTTTTAACCGATAACAACAAA-C
185 CCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * *
268784 ATTGT-GATTTATAATCATTAATAAGATTATAAATGAATTACCA-ATCAAAATATTGATGA-AGT
1 -TT-TCGATTTATAATCATTTATAAGATTATAAATGAATTA-TATATCATAATATTGATGATA-A
* * * * ** *
268846 TATGTTATCAAAATGATAATTATTCGTTGATAAACCATGTCAAGCTTTCCATA-GCATGATTTAG
62 TATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCA-AGGCATGATAAAC
* * * * *
268910 GTAAAATGCTC-TTTCCTGCTCAATGGATAGCGTCCACTTCATGTTTTTCAATGCAAACATCCTA
125 TTAAAATGCTCTTTTCTTG-TCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAA
*
268974 TTGTGATAGGTTTTAACCAATAACAACAAAGC
189 TTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * *
269006 TTACAACTTATAATCATTTTTAAGATTAAAAACGAATTACAAATCATAATATTGATGATAATATG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* * ** *
269071 CTATCAAAAT-ATTAACTATTTGTTGATAAA-TATTTTGAAGTTTTCCAAGGCATGATAAACTTA
66 TTATCAAAATGA-TAATTATTCATTGATAAACTA-TTTCAAGTTTT-CAAGGCATGATAAACTTA
* * * * * * **
269134 GAATACTCTTTTCTTGTC-ATAGGATAGTATCCATTTCAGGTTTCCCAACACAAACATCCAATTA
128 AAATGCTCTTTTCTTGTCAAT-GGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA
* * * ** * *
269198 TGGT-TGCTTTAACCAGGAAAAACAATGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * *
269226 TTTTGATTGATTTTTGATTTATACTAATTAGAAGATTATAATTGAATTATATATCGTAACATTCA
1 --TT--TCGA--TTT-A-TAAT-C-ATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * * ** **
269291 TGATAATATGTTATCAAAATTACAATTATACATTAATAAACCATTTCAAGCATTCGAACCCATGA
56 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATGA
* ** * * **
269356 TAAACTTAAAATACTCTTTTCAAGTTAATGGATTGGGTCCACCTT-ATGTTTTCCAATGCAAACA
120 TAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCA-CTTCATGTTTTCCAATGCAAACA
* * **
269420 TGCAATTATCATAGGTTTTAACTGATAACAACAAA-C
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * ** ** *
269456 ATTGCAATTTATAACCATTCATAAGATTATAAATGAAGTACAAATCGGAATATTGATGATGTTGT
1 -TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
* * *
269521 GTTATCAAAATGATAATTATTCATTGATAAACTAGTTCAAGATTTCGAAGGTATGATAAACTTAA
65 GTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATGATAAACTTAA
* * * ** * * * * *
269586 AATGCACTTTTCTTGTCAATGGATACCATCCATTTCACATTTTCCACTGCAAACTTTCAACTACG
129 AATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATG
* * * *
269651 AAAGGTTTTAAACAAGAACAATAAAGCTTTTGATTC
194 ATAGGTTTTAACCAATAACAACAAA------G---C
* * * *
269687 ATTTCAATTTATAATCA-TTATAGGATTATAAATGAACTATATATATCATAATATTGGTAATAAT
1 -TTTCGATTTATAATCATTTATAAGATTATAAATGAA-T-TATATATCATAATATTGATGATAAT
* * * * * * *
269751 ATGTAATCAAAATGATAACTATTCATTAATAAACCATTTCAAGCTTTCGAAGGAATGATAAACTA
63 ATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATGATAAACTT
** * * *** * *
269816 AAAATGCTCTTTTCTCAT-AATGGATAGCATCGACATCGCATTTCCCAATGCAAACATCAAATTA
127 AAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA
* * * * *
269880 TGATGGGTTTTAACTAAGAAAAAGTAAAGC
192 TGATAGGTTTTAACCAATAACAA-CAAAGC
* * * * *
269910 TTTGAATTTATTTCTGATTTAAAATCAACTT-TAAGGTCATAAATGAATCATATATCATAATATT
1 ----------TTTC-GATTTATAATC-ATTTATAAGATTATAAATGAATTATATATCATAATATT
* * * * * * * * *
269974 GATGATAATATGCTGTCAAAATTATAAGTATTTATTAATAAACCATTTTAAGTTTTTGAAGGCAT
54 GATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCAT
* * * * * * * *
270039 TATAAATTTAAAATGATCTTTTCTTATAAACT-GATAGCATCCACTTCACGTTTTCCAACGTAAA
118 GATAAACTTAAAATGCTCTTTTCTTGTCAA-TGGATAGCATCCACTTCATGTTTTCCAATGCAAA
* *
270103 CATCCAATTATAATAGGTTTTAACCAAGAATAACGAAGCTGTAGATTTA-T
182 CATCCAATTATGATAGGTTTTAACC---AATAAC-AA-C---A-A---AGC
* * * * ** * *
270153 TTTTGGTTTATAATTATTTATAGGATTATAAACAAATTATATATCATAATGTTGAT-ACCAATAT
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGA-TAATAT
* ** *
270217 GTTATCAAAATGATAATTATTCATT-A-AAAGGTATTTCTGGTATTTGC-AGCCATGATAAACTT
65 GTTATCAAAATGATAATTATTCATTGATAAA-CTATTTCAAGT-TTT-CAAGGCATGATAAACTT
* * ** *
270279 AAAATGCTATTTTCTTGTCAATGGATAGCATCCATTTCACATTTTGCAATGCAAACATCCAATTA
127 AAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTA
* * * *
270344 TGGTAGGCTTTAACCAAGAATAACAAAGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
** * * *
270373 TGTAGATTTATTTTTGACTGATAATCATTTATAAGATTATGAACGAATTATATGTCATAATATTG
1 T-T---TCGA---TT---T-ATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTG
* * * * * * * * *
270438 ATGACAATATGTTATCAAAATTATAATTATTCGTTGATAAAGTTTTTCAGGCTTTCGCAGTCATG
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTC-AAGGCATG
* * * * *
270503 ATATACTTAAAATGTTATTTTCTTGTCAATGAATAGCATCCACTTCATGTTTCCCAATGCAAACA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
** *
270568 TCCAATTATGATTA-GTTTTAAAGAATAAGAAGAACAAAGCTTACAAGTTGT
184 TCCAATTATGA-TAGGTTTTAACCAAT------AAC-AA-C--A-AA---GC
* * * * *
270619 TTTCGATTTATAATCATTTATCAGATTATAAATAAATTATATATTATAATGTTGATGATAATCTG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* * * * * *
270684 TTATTAAAATTG-TAATTATTTATTAATAAA-TCATTTCAAGATTTCGAAGGTATGATAAACTTT
66 TTATCAAAA-TGATAATTATTCATTGATAAACT-ATTTCAAGTTTTC-AAGGCATGATAAACTTA
* * * * *
270747 AAATGGTCTTTTTTTATCAATGGATAACATCTACTTCATG-TTTCCGAATGCAAACATCCAATTA
128 AAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTA
* ** *
270811 TGATAGGTTTTAAACAATAATGACCAAGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
* * * *
270840 TTTCGATTTATAATCATTTATAAGATTAAAAATGAACTATAAATCATAATATTGATGAGAATATG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* * * *
270905 TTCTCAAAATGATAATTATTCATTGAGAAA-TAATTTCAAGCTTTCGTA-GCTATGATAAACTTA
66 TTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAAGTTTTC-AAGGC-ATGATAAACTTA
* * * * * * * *
270968 AAGTCCTATTTTCTTGTCAATGGATTGCATCTACTTCACGTTTCCCGATTG-AAACATCCAATTA
128 AAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTA
* * ** * *
271032 T-AGTTGGTTTTCAGGAAGAACAACAAACC
192 TGA-TAGGTTTTAACCAATAACAACAAAGC
* *
271061 TTTCATTTTTTTTTGATTTGTAATCATTTATATGATTATAAATGAATTATATATCATAATATTGA
1 TTTC----------GATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * *
271126 TGATAATAAGTTATCAAAATTATAATTGTGT-ATTAATAAACTATTTCAAGATTTCGAAGGCATG
56 TGATAATATGTTATCAAAATGATAATTAT-TCATTGATAAACTATTTCAAGTTTTC-AAGGCATG
* *
271190 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCAT-CATTTCATGTTTTCCAATGCAAATA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
* *
271254 TCCAATTATGATAGATTTTAATCAATAACAACAAAGC
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAAGC
* * * * * * * * * *
271291 TGTCAATTCATAATCATTTATAAGATGAAAAATTAATTAGAAATCAAAATATTGGTGATAATATG
1 TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
* * * * * * *
271356 TTATTAAAATAATAATTATTCATTGATAAACCATTTTAAGCTTTCCAAGACATGATAAACTTAGA
66 TTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATGATAAACTTAAA
*** * * *
271421 ATGCTCTTTT-TT-TCTAAAAAATAGCATCCA-TTACACGTTTTCAAATGCAAACATCCAATGAT
130 ATGCTCTTTTCTTGTC-AATGGATAGCATCCACTT-CATGTTTTCCAATGCAAACATCCAATTAT
* * *
271483 GGTAGGTTTTAACTAATAATAACAAAGC
193 GATAGGTTTTAACCAATAACAACAAAGC
* * *
271511 TTTCAATTGATTTTCAATTTATAATCGTTATAAGATTATAAATTAAATTATATATCATAATATTG
1 TTTC----GA-TTT--A-TAATCAT--TTATAAGATTATAAA-TGAATTATATATCATAATATTG
* * * **
271576 ATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTGAAAGGCATG
55 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATG
* * * * * *
271641 ATAAATTTAAAATGATATTTTCTTGTCTATGAATAGCGTCCA---C------T----T-CAAACA
119 ATAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACA
* ** * *
271692 TCTAATTATGATAGGTTTTAAGTAAGAACAACAAAGTTGTTGATTTA
184 TCCAATTATGATAGGTTTTAACCAATAACAACAAA------G----C
* * * * *
271739 TGTTTGATTTATAATTATTTATAATATTATAAATAAACTATATATCATAATATTGATGATAATAT
1 T-TTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATAT
** * * * * **
271804 GTTATCAAAACCATAAGTATTCATTAATAAACTGTTTCAAGCTTTTGAAGGCATGACCAACTTAA
65 GTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATGATAAACTTAA
* ** * * * *
271869 AATGCTCTTTCCTTCCCATTAGATAGCATTCACTTCATG-TTTCCTAATGTAAACATCCAATTAT
129 AATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTAT
* * *
271933 GATAGGTTTTAACCAATAATAATAAAAC
193 GATAGGTTTTAACCAATAACAACAAAGC
* * * * *
271961 -TTC-ACTTTATTAGT--TTTAT-A-ATTAAAAATAAATTACAAATCATAATATTGATGATAATA
1 TTTCGA-TTTA-TAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATA
* * * **
272020 TGTTATCGAAATGATAATTATTCATTGGTAAACTATTTCAAGCTTTCCATTGCATGATAAACTTA
64 TGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATGATAAACTTA
* * * * * * ** *
272085 GAATAC-CATTTCTTGTAAAAGCATAGCATCCACAACACG-TTTCCTAATGCAAACATCCAATTA
128 AAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATCCAATTA
* * * **
272148 TGGTAGGTTTTGACCTAGGACAACAAAGC
192 TGATAGGTTTTAACCAATAACAACAAAGC
* * *
272177 TTTCGATTGATTTGCAATTTATAAGCACTATAAGATTATAAATGAATTATATATCATAATATTGA
1 TTTCGATT--TAT--AA-TCAT-----TTATAAGATTATAAATGAATTATATATCATAATATTGA
* * * * * **
272242 TGATAATATGTTATCAAAATTAGAATTATTCATTAATAAACCATTCCAAGCTTTTCAAATCATGA
56 TGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAG-TTTTCAAGGCATGA
* * * * * * * * *
272307 TAAACGTAAAATACTATTTTCTAGTCAATGGATAGTATCCACTGCACGTTTTTCAATGCAAAGAT
120 TAAACTTAAAATGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACAT
* * ** * * *
272372 CCAAGTATGATAAGTTGAAACCAAGAATAAGAAAGCATTC
185 CCAATTATGATAGGTTTTAACCAATAACAACAAAG----C
* * * *
272412 GATTTATGCTCAATTTATAATCATTTATAAGAATATAAATGAATTATAAATCGTAATATTGATGA
1 ----T-T--TCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGA
*
272477 TAATATATTAT
59 TAATATGTTAT
272488 AAGAAACCGT
Statistics
Matches: 6256, Mismatches: 1327, Indels: 860
0.74 0.16 0.10
Matches are distributed among these distances:
216 64 0.01
217 96 0.02
218 176 0.03
219 62 0.01
220 444 0.07
221 1386 0.22
222 228 0.04
223 26 0.00
224 22 0.00
225 17 0.00
226 14 0.00
227 17 0.00
228 60 0.01
229 173 0.03
230 1015 0.16
231 1108 0.18
232 952 0.15
233 141 0.02
234 32 0.01
235 164 0.03
236 12 0.00
237 10 0.00
238 4 0.00
239 5 0.00
240 5 0.00
241 8 0.00
242 8 0.00
243 3 0.00
244 1 0.00
245 1 0.00
246 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (220 bp):
TTTCGATTTATAATCATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATG
TTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGTTTTCAAGGCATGATAAACTTAAAA
TGCTCTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCCAATGCAAACATCCAATTATGAT
AGGTTTTAACCAATAACAACAAAGC
Found at i:268561 original size:672 final size:667
Alignment explanation
Indices: 263566--272375 Score: 4936
Period size: 672 Copynumber: 12.9 Consensus size: 667
263556 NNNTCTTTTT
* * * * * * *
263566 ATTTATAATTATTTATGAGATTATAAATGAATTATATATCGTAATATTGATGAAAATATGTTATC
1 ATTTATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATC
* * ** ** * * * *
263631 AAAATGATAA-TTTTTCGTTGATAAGTA-TTTCAAGTTTTTGAAGGCATGGTAAATTTAAAATGC
65 AAAATGATAACTATTT-ATTGATAAACATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATAC
* * * * * * * **
263694 TCTTTT-TATGACAATGGATAGCATCCACGTCATGTTTTCTATTGCAGACATCCAATTATTGTAG
129 TCTTTTCT-TGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTA-TGTTT
* * * * *
263758 GCTTTAGA-CAAAAACAACAAAGCTTTCAATTCATTCTCGATTTATAATCATTATAAGATTATAA
191 GCTTTA-ACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAA
* * * * * * *
263822 ACGAACTATATATATCATAGTATTGATGATAACATGTAATGAAAATGATAATT--T-ATTGATAA
255 ATGAA-T-TATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAA
* * * * * * *
263884 ACCA-TT-AGGTTTTCAAAGGCATGATAAA-TGT-AAAT-C--TTTTCTTATAAACGGAAAGCAT
318 ACCATTTCAAGCTTTCGAA-GCATGATAAACT-TAAAATACTATTTTCTTGTTAATGGATAGCAT
* ** * * * *
263942 CCACTTCAAG-TTTCCTAATGCAAACATTTAATTATGACAGG-TTCAACCAAGAATAACAAAGCT
381 CCACTTCATGTTTTCC-AATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAA---
* * * * * * * * *
264005 GCGTATTTCTTTTTGATTTATATTTCATATATAAAATTATAGATGAATTATATATCATAATATTG
442 ---TATTGC-----AATTTATA-ATCATTTATAAGATTATAAATGAATTACAAATCACAATATTG
* * * * * ** * **
264070 ATGACAATATATTATGAAAATTATAATTATTCATTAATAAAGTATTTCAGGCTTTCGCAGCCATG
498 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTC-CAAACATG
* ** * * * *
264135 ATGAACTTAAAATGCTAT-TTTCTTGTTAATAGATAGCATACACTTTATGTTTCCCAATGCAAAC
562 ATAAAGGTAAAATG--ATCTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAAC
* * ** * * ** * *
264199 ATCTAATTATGATTCGTATAAAGGAAGAACAACAAAGCTTTAATTTTCTTTTTCG
625 ATCCAATTGTGATAGGTTTTAACCAATAACAACAAAGC-TT-A----------CA
* * * *
264254 ATTTATAATTATTTATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATC
1 ATTTATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATC
* * * * * * *
264319 AAAATTATAATTATTTATTGATAAAC-TATTCAAGCTTTT-GAAAGAATGATAAACTTTA-AATG
65 AAAATGATAACTATTTATTGATAAACATTTTCAAG-TTTTCCAAGGCATGATAAAC-TTAGAATA
* * * * * * * * *
264381 TTCTTTTCTTGTCAATGAATAGCATTCACCTT-ATGTTTCCCAATGCGAACATCCAACTATGATA
128 CTCTTTTCTTGTCAA-GGATAGCATCCA-CTTCACGTTTTCCAATACAAACATCCAATTATG-TT
* * * * * *
264445 GGTTTTAAACAATAACAATAAAGCTTTC-----------GATTTATAATCATTTATAAGATTAAA
190 TGCTTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCA-TTATAAGATTATA
* * * * * **
264499 AATGAATTACAAATCATAATATTGATGATAATATGCTATCAAAATGATAATTATTCATTGGTAAA
254 AATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAAA
** * * * * * *
264564 TAATTTCAAGGTTTTC-AAGGCATGATAAACTTAAAATGCTTTTTTGTTG-TAAAGGATAGTATC
319 CCATTTCAA-GCTTTCGAA-GCATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATC
* ** * * * * *
264627 CACTACACATTTTCCAAGGCAAACATCCAATTATGGTAAGTTTTAACCAATAACAACAAAGCTTT
382 CACTTCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAA--TAT
* * * * * * * *
264692 TGAATGATATTCGTTTTAGAATCA-TTATAAGACTACAAATGACTTATATATCATAATATTGATG
445 TG---CA-A-----TTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATG
* * * * *
264756 ATAATATGTTGTTAAAATTATAGTTATTCATTAATAAACCATTTCAAGC-TTCCAAAGGCATGAT
501 ATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCAAA--CATGAT
** * * * * * * * *
264820 AAACTTAAAATGCTATATTATTGTCAATGGATAGCATCCACTTCACGTTTTCGAATGTAAACATA
564 AAAGGTAAAATGATCT-TTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATC
* * * *** * * *
264885 CAATTATGATAAGTTTCAGGTAAGAACAA-TAAGCTTTCCATTTCTT
628 CAATTGTGATAGGTTTTAACCAATAACAACAAAGC-TT--A---C-A
* * * * *
264931 TTTTGATGTATATCATTTATAAGATTATAAAA-GAATTATATATTATAATATTGATAATAATATG
1 ATTT-A--TA-ATCATTT-TAAGATTA-AAAATGAATTACAAATCATAATATTGATGATAATATG
* * * * * * ** * *
264995 TTATTAAAATTATAATTATTTA-T-ATAAAAACTATTTCAAGCTTTCGAAGATATAATAAATTTA
60 TTATCAAAATGATAACTATTTATTGATAAACA-T-TTTCAAGTTTTCCAAGGCATGATAAACTTA
* * * * * * * * *
265058 -AGCTATTATTTTCTTATCAATAGAGT-GCATTCACATT-A--TATTTCACAATGCAAAGATGCA
123 GA-ATACTCTTTTCTTGTCAA-GGA-TAGCATCCAC-TTCACGT-TTTC-CAATACAAACATCCA
* * * * *
265118 ATTCTGATTGTTTTTAACCAA-AATCAACAAAGCATTCAATCT-ATTTTTGATTTATAATCATTT
182 ATTATGTTTG-CTTTAACCAAGAA-CAACAAAGCTTTCGAT-TGATTTTTGATTTATAATCA-TT
* * * * **
265181 ATACGATTATAAATAAATTATATATCATAATATTGATGATAGTATGTTATCAAAATGATAATTTT
243 ATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTAC
* * * * **
265246 TCATTGATAAATCC-TTTCAAGCTTTCAAAGGCATAATAAACTTAAAATATTATTTTCTTGTCCA
308 TCATTAATAAA-CCATTTCAAGCTTTCGAA-GCATGATAAACTTAAAATACTATTTTCTTGTTAA
* **
265310 TGGATAGCATCCACTTCATGTTTCCCCAATGCAAACAT-CTAATTATGATAGGTTTTAAATAATA
371 TGGATAGCATCCACTTCATGTTT-TCCAATGCAAACATGC-AATTATGATAGGTTTTAACCAATA
** * * * *
265374 A-AGACAAAGCTTTCAATTTATAATCACTTATAAGATTAAAAATGAATTACAAA-CATAATATTG
434 ACA-ACAAATATTGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTG
* ** * * * *
265437 ATGATAATATATTATCAAAATGATAATTATTCATTGATAAATAATTTTAAGGTTTTCAAGGCATG
498 ATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCAA-ACATG
** * * * * * *
265502 ATAAACTTAAAATGCTCTTTCTTGTCAAAGAATAGCATCCACTACATATTTCCCAATGCAAGCAT
562 ATAAAGGTAAAATGATCTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACAT
* * * * *
265567 CCAATATG-G-TAGGTATTAACCAAGAATAACAAATCTTTTGATTGATATTCG
627 CCAAT-TGTGATAGGTTTTAACCAATAACAACAAA------G-CT--TA--CA
* * * *** * *
265618 ATTTACAATCATTATAAGATTACAAATGAATTATGTATCATAATATTAATGATAGTATGTTATCA
1 ATTTATAATCATTTTAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATCA
* * * * * * * *
265683 AAATGATAA-TTTTTCATTGATAAATC-CTTTCAAGCTTTCGAAGGAATGATGAACTTAAAATGC
66 AAATGATAACTATTT-ATTGATAAA-CATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATAC
** * * * * * * *
265746 AATTTTCTTGTCAATGGATAGCATCCATTTCATGTTTTTCAATGCTAATATCCAATTATGATTGG
129 TCTTTTCTTGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATG-TTTG
* ** * * * *
265811 TTTTAGGCAAGAACAACAAAGCTTTCCATT-TTTTTTGGTTTAT-ATCATCTATAAGGTTATAAA
192 CTTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCAT-TATAAGATTATAAA
* * ** * * * * *
265874 AGAATTATATATCATAGTATTTCTGATAATATGCTATTAAAATTATTATTATTTA-TATATAAAC
256 TGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTA-ATAAAC
* * * * * * * * * **
265938 TATTTCAAGCTTTTGAAGGTATGATAGATTTAAAGTACTGTTTTTTTGTTAATAGATAGCATGAA
320 CATTTCAAGCTTTCGAA-GCATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCA
* * * ** * *
266003 CTTCATATTTTCCAATGCAAAGATCCAATTATGATAGCATTTAACTAAAAACAATAAAGCATTGA
384 CTTCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAAC----AA-CA---A
* * * * * *
266068 ATTTTTTTTCAATTTATAATCATTTATACGATTATAAATGAATCAGACATCACAATATTGATGAT
441 A---TATTGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATGAT
* * * *
266133 AATATGTTATCAAAATAATTATT-TTCCATTGATAAATCC-TTTCAAGCTTTCGAAAGTATGATA
503 AATATGTTATCAAAATGATAATTATT-CATTGATAAA-CCATTTCAAGCTTTCCAAA-CATGATA
* * * * * * *
266196 AA-CTCAAAATGCTAT-TTTCTTGTTAATAGATAGCATCCACTTCATATTTCCTAATCCGAACAT
565 AAGGT-AAAATG--ATCTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACAT
* * * * *
266259 CCAATTATGATAGGTTTTAACTAATAACGACAAAGCTTTCG
627 CCAATTGTGATAGGTTTTAACCAATAACAACAAAGCTTACA
* * *
266300 ATTTATAATCATTTATAAGATTAAAAATGAATTACGAATCATAACATTGATGATAATATATTATC
1 ATTTATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATC
* * * * * * * *
266365 AAAATGATCATTATTCATTGATAAATAGTTTCAAGGTTTT-CAAGGCTTAATAAACTTCA-AATG
65 AAAATGATAACTATTTATTGATAAACATTTTCAA-GTTTTCCAAGGCATGATAAACTT-AGAATA
* * * * * **
266428 CTCTTTTCTTGTCAAGGAATAACATCCACTACATGTTTTTCAATGCAAACATCCAATTATGGTAG
128 CTCTTTTCTTGTCAAGG-ATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTAT-GTTT
* * * * * * * *
266493 GTTTTAACCAAGAATAACAAAGCTTTCAATTGATATTCGATTTACAATCATCATAAGATTACAAA
191 GCTTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAAA
* * * * *
266558 TAAATTATATATCATAATATTGATGACAATATGTTATCAAAATTATAATTATTTATTAATAAACT
256 TGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAAACC
* * ** * * ***
266623 ATTTCAAGCTTTCAAAAGCATGATAAACTTAAAATGCTATTTTCTTGCCAGTGAATAGCATCTGT
321 ATTTCAAGCTTTC-GAAGCATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCAC
* * * ** *
266688 TTCATGGTTTT-CAATACAAACATTCAATTATGATGGGTTTTAGGCAAGAACAACAAAGCTTTCT
385 TTCAT-GTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAA------T
** * * * * * *
266752 ATTTTTTTTGTTGATTTAT-ATCATTTTTAACATTATAAAAG-ATTATATATCATAATATTGATG
443 A------TTG-CAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATG
* * ** * *
266815 ATAATATGTTATTAAAATTATAATTA-T-ATACATAAACCATTTCAAGCTTAT-GAAGGCATGAT
501 ATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTT-TCCAA-ACATGAT
** * * *
266877 AAATTTAAACTACT-AT-TTTCATGTCAATAGATAGGCATCCACTTCATGTTTTCCAATGCAGAA
564 AAAGGTAAA--A-TGATCTTTCTTGTCAATGGATA-GCATCCACTTCATGTTTCCCAATGCA-AA
* ** *
266940 -ATCCAATTATGATAATTTTTAA-CAAAAACAACAAAGCATTTAACTTA
624 CATCCAATTGTGATAGGTTTTAACCAATAACAACAAAGC--TT-AC--A
* ** * * * * *
266987 TTTTTTATTTATAATCA-TTTATATATTGTAAGTGAATAATATATCACAATATTGATGATAATAT
1 ------ATTTATAATCATTTTA-AGATTAAAAATGAATTACAAATCATAATATTGATGATAATAT
* * * * * *
267051 GTTATCAAAATGATAA-TTTTTCATTGATAAATC-CTCTCAAGCTTTCGAAGGTATGATAAACTT
59 GTTATCAAAATGATAACTATTT-ATTGATAAA-CATTTTCAAGTTTTCCAAGGCATGATAAACTT
* * * * * ** * *
267114 AAAATGCTATTTTCTTGTCAATGGATAGCATCCACTTGACGTTTCCCAGGACAAACTTCCAATTC
122 AGAATACTCTTTTCTTGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTA
** *** * *
267179 TGATAAG-TTTGAATTGAGAACAAGAAAG----C-ATTCA------ATTTATAATCATTTATACA
186 TG-TTTGCTTT-AACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCA-TTATA-A
* * * * * * * *
267232 -ACTATAAATGCATTATATGTTATAATATTGATAATTATATGTTA-CTACAATGATAATTACTCA
247 GATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATC-AAAATTATAATTACTCA
* * * * *
267295 TTGATAAATCATTTCTAGCTTTTGAAGGCATGAT-AACATTAAAATGCTATTTTCTTGTTAATGG
311 TTAATAAACCATTTCAAGCTTTCGAA-GCATGATAAAC-TTAAAATACTATTTTCTTGTTAATGG
* * * * * *
267359 ATAGCATCCACTTCATG-TATCTCAATACAAATATCCAATTATGATAAGTTTTAAGCAACAATGA
374 ATAGCATCCACTTCATGTTTTC-CAATGCAAACATGCAATTATGATAGGTTTTAA-C--CAATAA
* * *
267423 CAA-AGTTTTTAATTCATGTTCAATTTATAATCATTTATAAGATTATAAATGAATTATATATCAC
435 CAACA------AA-T-AT-TGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCAC
* * * *
267487 AATATTGATGACAATACGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCCA
491 AATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCA
* * *
267552 CAGCATGATAAAGGTAACATGCTCTTTCTTGCTCAATGGATAGCATCCACTTCATGTTTCCCAAT
556 -AACATGATAAAGGTAAAATGATCTTTCTTG-TCAATGGATAGCATCCACTTCATGTTTCCCAAT
* * **
267617 GCAAACATCTAATTGTGATAGGTTTCAACCAATAACAACAAAGCTTATG
619 GCAAACATCCAATTGTGATAGGTTTTAACCAATAACAACAAAGCTTACA
* *
267666 GTTTATAATCAGTTTTCAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATATTAT
1 ATTTATAATCA-TTTT-AAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTAT
* *
267731 CAAAATGATAACTATTTGTTGATAAACATTTTCAAGTTTTTCAAGGCATGATAAACTTAGAATAC
64 CAAAATGATAACTATTTATTGATAAACATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATAC
* * * * * *
267796 TCTTTTCTTGTCATAGGACAGCATCCACTTCATGTTTTCCAACATAAACATTCAATTATGGTTGC
129 TCTTTTCTTGTCA-AGGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATGTTTGC
* * * *
267861 TTTAACCAAGAAAAACAAAGTTTTCGATTGATTTTTGATTTATAATGATTATAAGATTATAATTG
193 TTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAAATG
* * *
267926 AATTATATATCATAATATTGATGACAATATGTTATCAAAGTTACAATTACTCATTAATAAACCAT
258 AATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAAACCAT
* * * * *
267991 TTCAAGCTTTTGAAGCTATGATAAACTTAAAATACTCTTTTCATGTTAATGGATAACATCCACCT
323 TTCAAGCTTTCGAAGC-ATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCACTT
*
268056 CATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCGATAACAACAAATATTGCGAA-
387 CATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAATATTGC-AAT
* * **
268120 TTATAATCATTCATGAGATTATAAATGAATTACAAATCGA-AATATTGATGATGTTATGTTATCA
451 TTATAATCATTTATAAGATTATAAATGAATTACAAATC-ACAATATTGATGATAATATGTTATCA
* *
268184 AAATGATAATTATTCATTGATAAACCATGTCAAGCGTTCCACAACATGATAAAGGTAAAATGATC
515 AAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCA-AACATGATAAAGGTAAAATGATC
* * *
268249 TTTCCTGCTCAATGGATAGCATCCACTCCATGTTTCCCAATGCAAACATCCCATTGTGATAGGTT
579 TTTCTTG-TCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTGTGATAGGTT
*
268314 TTAACCAATAACAAGAAAGCTTACA
643 TTAACCAATAACAACAAAGCTTACA
* * * *
268339 ATTTGTAATCATTTTCAAGATTAAAAATAAATTACAAACCATAATATTGATGATAATGTGTTATC
1 ATTTATAATCATTTT-AAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATC
* * *
268404 AAAATCATAACTATTTGTTGATAAACATTTTCAAGTTTTCCAATGCATGATAAACTTAGAATACT
65 AAAATGATAACTATTTATTGATAAACATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATACT
* * *
268469 CTTTTCTTATCATAGGACT-GCATCCACTTCACATTTTCTAATACAAACATCCAATTATGTTTGC
130 CTTTTCTTGTCA-AGGA-TAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATGTTTGC
* *
268533 TTTAACCAAGAA-AATCAAAGCTTTCGATTGATTTTTGATTTATAATGATTATAAGATTATAATT
193 TTTAACCAAGAACAA-CAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAAAT
* * * *
268597 GAATTATATATCATAATATTGATGACAATATGTTATCAAAGTTACAACTACTCATTAATAAACCA
257 GAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAAACCA
* * * * *
268662 TTTCAAACTTTCGAAGCCATGATAAACTTAAAATGCTCTTTTCATGTTAATGGATAGCATCCACC
322 TTTCAAGCTTTCGAAG-CATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCACT
* * * **
268727 TCATGTTTTTCAATGCAAACATGCAATTATGATAGGTTTTAACCGATAACAACAAACATTGTGAT
386 TCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAATATTGCAAT
* * * *
268792 TTATAATCATTAATAAGATTATAAATGAATTACCAATCAAAATATTGATGA-AGTTATGTTATCA
451 TTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATGATA-ATATGTTATCA
* * * ** *
268856 AAATGATAATTATTCGTTGATAAACCATGTCAAGCTTTCCATAGCATGATTTAGGTAAAATGCTC
515 AAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCA-AACATGATAAAGGTAAAATGATC
* * ** *
268921 TTTCCTGCTCAATGGATAGCGTCCACTTCATGTTTTTCAATGCAAACATCCTATTGTGATAGGTT
579 TTTCTTG-TCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTGTGATAGGTT
268986 TTAACCAATAACAACAAAGCTTACA
643 TTAACCAATAACAACAAAGCTTACA
* * *
269011 ACTTATAATCATTTTTAAGATTAAAAACGAATTACAAATCATAATATTGATGATAATATGCTATC
1 ATTTATAATCA-TTTTAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATC
* * *
269076 AAAAT-ATTAACTATTTGTTGATAAATATTTTGAAGTTTTCCAAGGCATGATAAACTTAGAATAC
65 AAAATGA-TAACTATTTATTGATAAACATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATAC
* * * * * *
269140 TCTTTTCTTGTCATAGGATAGTATCCATTTCAGGTTTCCCAACACAAACATCCAATTATGGTTGC
129 TCTTTTCTTGTCA-AGGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATGTTTGC
* * * * * * * *
269205 TTTAACCAGGAAAAACAATGCTTTTGATTGATTTTTGATTTATACTAATTAGAAGATTATAATTG
193 TTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAAATG
* * * *
269270 AATTATATATCGTAACATTCATGATAATATGTTATCAAAATTACAATTA-TACATTAATAAACCA
258 AATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACT-CATTAATAAACCA
* * * ** * **
269334 TTTCAAGCATTCGAACCCATGATAAACTTAAAATACTCTTTTCAAGTTAATGGATTGGGTCCACC
322 TTTCAAGCTTTCGAA-GCATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCA-C
* ** *
269399 TT-ATGTTTTCCAATGCAAACATGCAATTATCATAGGTTTTAACTGATAACAACAAACATTGCAA
385 TTCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAATATTGCAA
* * * ** ** *
269463 TTTATAACCATTCATAAGATTATAAATGAAGTACAAATCGGAATATTGATGATGTTGTGTTATCA
450 TTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATGATAATATGTTATCA
* * * * ** **
269528 AAATGATAATTATTCATTGATAAACTAGTTCAAGATTTCGAAGGTATGATAAACTTAAAATGCA-
515 AAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCAA-ACATGATAAAGGTAAAATG-AT
* * ** * * * * * ** *
269592 CTTTTCTTGTCAATGGATACCATCCATTTCACATTTTCCACTGCAAACTTTCAACTACGAAAGGT
578 C-TTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTGTGATAGGT
* * *
269657 TTTAAACAAGAACAATAAAGCTTTTGATTCATTTCA
642 TTTAACCAATAACAACAAAGC------TT-A---CA
* * * * * * * *
269693 ATTTATAATCATTATAGGATTATAAATGAACTATATATATCATAATATTGGTAATAATATGTAAT
1 ATTTATAATCATTTTAAGATTAAAAATGAA-T-TACAAATCATAATATTGATGATAATATGTTAT
* * * * * * * *
269758 CAAAATGATAACTATTCATTAATAAACCA-TTTCAAGCTTTCGAAGGAATGATAAACTAAAAATG
64 CAAAATGATAACTATTTATTGATAAA-CATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATA
** * * * * * * * **
269822 CTCTTTTCTCAT-AATGGATAGCATCGACATCGCATTTCCCAATGCAAACATCAAATTATGATGG
128 CTCTTTTCTTGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATG-TTT
* * * * * * * * *
269886 GTTTTAACTAAGAAAAAGTAAAGCTTT-GAATTTATTTCTGATTTAAAATCAACTT-TAAGGTCA
191 GCTTTAACCAAGAACAA-CAAAGCTTTCG-ATTGATTTTTGATTTATAATC-A-TTATAAGATTA
* * * * * *
269949 TAAATGAATCATATATCATAATATTGATGATAATATGCTGTCAAAATTATAAGTATTTATTAATA
252 TAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATA
* * * * * * * *
270014 AACCATTTTAAGTTTTTGAAGGCATTATAAATTTAAAATGA-TCTTTTCTTATAAACT-GATAGC
317 AACCATTTCAAGCTTTCGAA-GCATGATAAACTTAAAAT-ACTATTTTCTTGTTAA-TGGATAGC
* * * * *
270077 ATCCACTTCACGTTTTCCAACGTAAACATCCAATTATAATAGGTTTTAACCAAGAATAACGAAGC
379 ATCCACTTCATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACC---AATAAC-AA-C
* **** * * ** * * * *
270142 TGTAGATTTATTTTTGGTTTATAATTATTTATAGGATTATAAACAAATTATATATCATAATGTTG
439 ---A-A-ATA-TTGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTG
* ** ** * * **
270207 AT-ACCAATATGTTATCAAAATGATAATTATTCATT-A-AAAGGTATTTCTGGTATTTGCAGCCA
498 ATGA-TAATATGTTATCAAAATGATAATTATTCATTGATAAA-CCATTTCAAG-CTTTCCAAACA
** * ** **
270269 TGATAAACTTAAAATGCTAT-TTTCTTGTCAATGGATAGCATCCATTTCACATTTTGCAATGCAA
560 TGATAAAGGTAAAATG--ATCTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGCAA
* * * * * *
270333 ACATCCAATTATGGTAGGCTTTAACCAAGAATAACAAAGCTGTAGA
623 ACATCCAATTGTGATAGGTTTTAACCAATAACAACAAAGCT-TACA
** * * ** *
270379 TTTATTTTTGACTGATAATCATTTATAAGATTATGAACGAATTATATGTCATAATATTGATGACA
1 ---A---TT---T-ATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATA
* * ** ** * * * *
270444 ATATGTTATCAAAATTATAATTATTCGTTGATAAAGTTTTTCAGGCTTTCGC-AGTCATGATATA
55 ATATGTTATCAAAATGATAACTATTTATTGATAAACATTTTCAAGTTTTC-CAAGGCATGATAAA
* ** * * * * *
270508 CTTAAAATGTTATTTTCTTGTCAATGAATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAA
119 CTTAGAATACTCTTTTCTTGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAA
* * ** * * * *
270573 TTATGATTAGTTTTAAAGAATAAGAAGAACAAAGCTTACAAGTTG-TTTTCGATTTATAATCATT
183 TTATG-TTTGCTTT--A-ACCAAGAACAACAAAGCTTTCGA-TTGATTTTTGATTTATAATCA-T
* * * * * * *
270637 TATCAGATTATAAATAAATTATATATTATAATGTTGATGATAATCTGTTATTAAAATTGTAATTA
242 TATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTA
* * * * * * ** * * * *
270702 TTTATTAATAAATCATTTCAAGATTTCGAAGGTATGATAAACTTTAAATGGTCTTTTTTTATCAA
307 CTCATTAATAAACCATTTCAAGCTTTCGAA-GCATGATAAACTTAAAATACTATTTTCTTGTTAA
* * * *
270767 TGGATAACATCTACTTCATG-TTTCCGAATGCAAACATCCAATTATGATAGGTTTTAAACAATAA
371 TGGATAGCATCCACTTCATGTTTTCC-AATGCAAACATGCAATTATGATAGGTTTTAACCAATAA
** * ** * * * * * *
270831 TGACCAAGCTTTCGATTTATAATCATTTATAAGATTAAAAATGAACTATAAATCATAATATTGAT
435 CAACAAATATTGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGAT
* * * ** ** *
270896 GAGAATATGTTCTCAAAATGATAATTATTCATTGAGAAATAATTTCAAGCTTTCGTAGCTATGAT
500 GATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCAAAC-ATGAT
** * * * * * *
270961 AAACTTAAAGTCCTAT-TTTCTTGTCAATGGATTGCATCTACTTCACGTTTCCCGATTG-AAACA
564 AAAGGTAAAAT--GATCTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCC-AATGCAAACA
* * * ** * * *
271024 TCCAATTAT-AGTTGGTTTTCAGGAAGAACAACAAACCTTTCA
626 TCCAATTGTGA-TAGGTTTTAACCAATAACAACAAAGCTTACA
* * * * *
271066 TTTTTTTTTGATTTGTAATCATTTATATGATTATAAATGAATTATATATCATAATATTGATGATA
1 ----------ATTTATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATA
* * * * * * * *
271131 ATAAGTTATCAAAATTATAATTGTGTATTAATAAAC-TATTTCAAGATTTCGAAGGCATGATAAA
55 ATATGTTATCAAAATGATAACTATTTATTGATAAACAT-TTTCAAGTTTTCCAAGGCATGATAAA
* * * * * *
271195 CTTAAAATGCTCTTTTCTTGTCAATGGATAGCAT-CATTTCATGTTTTCCAATGCAAATATCCAA
119 CTTAGAATACTCTTTTCTTGTCAA-GGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAA
* * * * * * *
271259 TTATGATAGATTTTAATCAATAACAACAAAGC--T-G--TCA------ATTCATAATCATTTATA
183 TTATGTTTG-CTTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCA-TTATA
* * * * * * * * * *
271313 AGATGAAAAATTAATTAGAAATCAAAATATTGGTGATAATATGTTATTAAAATAATAATTATTCA
246 AGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCA
* * * * * * ***
271378 TTGATAAACCATTTTAAGCTTTCCAAGACATGATAAACTTAGAATGCTCTTTT-TT-TCTAAAAA
311 TTAATAAACCATTTCAAGCTTTCGAAG-CATGATAAACTTAAAATACTATTTTCTTGT-TAATGG
* * * * * * *
271441 ATAGCATCCA-TTACACGTTTTCAAATGCAAACATCCAATGATGGTAGGTTTTAACTAATAATAA
374 ATAGCATCCACTT-CATGTTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAA
* * * * *
271505 CAAAGCTTTCAATTGATTTTCAATTTATAATC-GTTATAAGATTATAAATTAAATTATATATCAT
438 CAAA----T--ATTG-----CAATTTATAATCATTTATAAGATTATAAA-TGAATTACAAATCAC
* * *
271569 AATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTT-GA
491 AATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCA
** * * * *
271633 AAGGCATGATAAATTTAAAATGATATTTTCTTGTCTATGAATAGCGTCCA---C-----T-----
556 AA--CATGATAAAGGTAAAATGAT-CTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAA
* * ** * * *
271685 T-CAAACATCTAATTATGATAGGTTTTAAGTAAGAACAACAAAGTTGTTGATTTA
618 TGCAAACATCCAATTGTGATAGGTTTTAACCAATAACAACAAAG--CTT-A--CA
* * * * * * *
271739 TGTTTGATTTATAATTATTTATAATATTATAAATAAACTATATATCATAATATTGATGATAATAT
1 ------ATTTATAATCATTT-TAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATAT
** * * * * **
271804 GTTATCAAAACCATAAGTATTCATTAATAAAC-TGTTTCAAGCTTTT-GAAGGCATGACCAACTT
59 GTTATCAAAATGATAACTATTTATTGATAAACAT-TTTCAAG-TTTTCCAAGGCATGATAAACTT
* * * ** * * **
271867 AAAATGCTCTTTCCTTCCCATTA-GATAGCATTCACTTCATG-TTTCCTAATGTAAACATCCAAT
122 AGAATACTCTTTTCTTGTCA--AGGATAGCATCCACTTCACGTTTTCC-AATACAAACATCCAAT
** * * * * * *
271930 TATGATAGGTTTTAACCAATAATAATAAAAC-TTC-----A-CTTT-A-TTAGT--T--TTAT-A
184 TATG-TTTGCTTTAACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTA-TAATCATTATAA
* * * * * * *
271981 -ATTAAAAATAAATTACAAATCATAATATTGATGATAATATGTTATCGAAATGATAATTATTCAT
247 GATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCAT
** * * * * * * * *
272045 TGGTAAACTATTTCAAGCTTTCCATTGCATGATAAACTTAGAATACCA-TTTCTTGTAAAAGCAT
312 TAATAAACCATTTCAAGCTTTCGA-AGCATGATAAACTTAAAATACTATTTTCTTGTTAATGGAT
** * * * * *
272109 AGCATCCACAACACG-TTTCCTAATGCAAACATCCAATTATGGTAGGTTTTGACCTAGGACAACA
376 AGCATCCACTTCATGTTTTCC-AATGCAAACATGCAATTATGATAGGTTTTAACC-A--ATAAC-
* * * * * * *
272173 AAGCTTTCGATTGATTTGCAATTTATAAGCA-CTATAAGATTATAAATGAATTATATATCATAAT
436 AA-----CAAAT-A-TTGCAATTTATAATCATTTATAAGATTATAAATGAATTACAAATCACAAT
* * * * *
272237 ATTGATGATAATATGTTATCAAAATTAGAATTATTCATTAATAAACCATTCCAAGCTTTTCAAAT
494 ATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCCAAA-
* * * * * * **
272302 CATGATAAACGTAAAAT-ACTATTTTCTAGTCAATGGATAGTATCCACTGCACGTTTTTCAATGC
558 CATGATAAAGGTAAAATGA-T-CTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCAATGC
*
272366 AAAGATCCAA
621 AAACATCCAA
272376 GTATGATAAG
Statistics
Matches: 6523, Mismatches: 1200, Indels: 807
0.76 0.14 0.09
Matches are distributed among these distances:
664 1 0.00
665 118 0.02
666 172 0.03
667 4 0.00
668 40 0.01
669 141 0.02
670 55 0.01
671 71 0.01
672 1277 0.20
673 234 0.04
674 20 0.00
675 142 0.02
676 52 0.01
677 19 0.00
678 23 0.00
679 70 0.01
680 142 0.02
681 204 0.03
682 678 0.10
683 589 0.09
684 573 0.09
685 266 0.04
686 52 0.01
687 219 0.03
688 267 0.04
689 30 0.00
690 45 0.01
691 87 0.01
692 191 0.03
693 153 0.02
694 29 0.00
695 226 0.03
696 131 0.02
697 22 0.00
698 169 0.03
699 11 0.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (667 bp):
ATTTATAATCATTTTAAGATTAAAAATGAATTACAAATCATAATATTGATGATAATATGTTATCA
AAATGATAACTATTTATTGATAAACATTTTCAAGTTTTCCAAGGCATGATAAACTTAGAATACTC
TTTTCTTGTCAAGGATAGCATCCACTTCACGTTTTCCAATACAAACATCCAATTATGTTTGCTTT
AACCAAGAACAACAAAGCTTTCGATTGATTTTTGATTTATAATCATTATAAGATTATAAATGAAT
TATATATCATAATATTGATGATAATATGTTATCAAAATTATAATTACTCATTAATAAACCATTTC
AAGCTTTCGAAGCATGATAAACTTAAAATACTATTTTCTTGTTAATGGATAGCATCCACTTCATG
TTTTCCAATGCAAACATGCAATTATGATAGGTTTTAACCAATAACAACAAATATTGCAATTTATA
ATCATTTATAAGATTATAAATGAATTACAAATCACAATATTGATGATAATATGTTATCAAAATGA
TAATTATTCATTGATAAACCATTTCAAGCTTTCCAAACATGATAAAGGTAAAATGATCTTTCTTG
TCAATGGATAGCATCCACTTCATGTTTCCCAATGCAAACATCCAATTGTGATAGGTTTTAACCAA
TAACAACAAAGCTTACA
Found at i:273477 original size:448 final size:448
Alignment explanation
Indices: 272640--273893 Score: 1096
Period size: 448 Copynumber: 2.7 Consensus size: 448
272630 TTTCAATTTG
* * * *
272640 TAATATTGATGATAATATGCTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCG
1 TAATATTGATGATAATATGTTATTAAAATGATAATTATTCATTGAT-AACTATTTCAAGCTTTCA
** *
272705 AAGCATTATAAACTTAAAATGCTCTTTTTTCCTCACTTGATGGCATCCACTTCAGCTTTCCCAAA
65 AAGCAAGATAAACTTAAAATGCTCTTTTTT-GTCA----ATGG-----A--T-AGCTTTCCCAAA
* * * *
272770 GCAAACATCCAATTATGATAGGTTTTAACCAAGAACAAGAAAACTTTTGATTTATTTTGAATTTA
117 GCAAACATCCAATTATGATAGGTTTTAACCAAGAACAACAAAACCTTCGACTTATTTT-AATTTA
* *
272835 TAATCATTTATATGATTATAAATGAATTATATAACATAATATTGATGATAATATGTTATTAAAAT
181 TAATCATTTATATGATTATAAATGAATTATATAACATAATATTGATGATAATATGATATCAAAAT
*
272900 GATAATGATTCATTGATAAACCTTTTCAAGCTTTCAAAAGCATGATAAAGTTAAAATCCTCTTTT
246 GATAATGATTCATTGATAAACCATTTCAAGCTTTCAAAAGCATGATAAAGTTAAAATCCTCTTTT
* * ** * * *
272965 CTAGTCAAAAGATGACATCTACTTCATGTTTCCCAATGCAAGCATTTAATTATGATAAGTTTTAA
311 CTAGTCAAAAGATAACATCCACTTCATACTTCCCAATGCAAACATCTAATTAAGATAAGTTTTAA
** * * * * *
273030 TTGA-GAACAACAAAGCTTTCGATTAATTTTCGATTTGTAATAATTTATAAGATTATAA-ATGAA
376 -CCATGAACAACAAAGCTTTCAATTAATTTTCGACTTATAATAATTTATAAAAATA-AATATGAA
*
273093 TTATATATCA
439 TTATAGATCA
* *
273103 TAATATAGATGATAATATGTTGTTAAAATGATAATTATTCATTGATAACTATTTCAAGCTTTCAA
1 TAATATTGATGATAATATGTTATTAAAATGATAATTATTCATTGATAACTATTTCAAGCTTTCAA
* *
273168 AGACAAGATAAACTTAAAATGCTCTTTTATTGTCAATGGATAGCTTT-CCTATGCAAACATCCAA
66 AG-CAAGATAAACTTAAAATGCTCTTTT-TTGTCAATGGATAGCTTTCCCAAAGCAAACATCCAA
* * *
273232 TTATGATAGGTTTTAACCAAGAATAACAAAGCCTTCGACTTGTTTT-ATTTATAATCATTTATGA
129 TTATGATAGGTTTTAACCAAGAACAACAAAACCTTCGACTTATTTTAATTTATAATCATTTAT-A
* * * * ** *
273296 -GATTTTAAATGAATTATGTATCATAATATTGATGA-AGATATGATGTCAAAATGATAATTTTTT
193 TGATTATAAATGAATTATATAACATAATATTGATGATA-ATATGATATCAAAATGATAATGATTC
* * * * * * * *
273359 ATTGATAAAGCATTTCATG-TCTT-AGAATGCATTATAAA-TTCTATATGCTTTTTTC-ATGTCA
257 ATTGATAAACCATTTCAAGCT-TTCA-AAAGCATGATAAAGTT-AAAATCCTCTTTTCTA-GTCA
* * *
273420 ATAA-ATAACATCCACTTCATACTTCCCAATGCAAATATCTAGTTAAGATAGGTTTTAACCATGA
318 A-AAGATAACATCCACTTCATACTTCCCAATGCAAACATCTAATTAAGATAAGTTTTAACCATGA
* * * * * * * * *
273484 ATAATAAAGCTTTTAATTTATTTTTGACTTATAGTCATTTGTAAAAATAAATATGAATTGTAGAT
382 ACAACAAAGCTTTCAATTAATTTTCGACTTATAATAATTTATAAAAATAAATATGAATTATAGAT
*
273549 CG
447 CA
* * * * **
273551 TAATATTGATGATAATATGTTATTAAAATGTTAATTTTTCATTGACAAATCATTTCAAAATTTCT
1 TAATATTGATGATAATATGTTATTAAAATGATAATTATTCATTGATAACT-ATTTCAAGCTTTC-
* * ** * *
273616 AAGGC-AGATAAACTTAATATATTCATTTCTTGTCAATGGATAGCATCTACTTCATGTTTCTTAA
64 AAAGCAAGATAAACTTAAAATGCTC-TTTTTTGTCAATGGATAG---CT--TTC------C-CAA
* * ** * * * * * *
273680 TGCAAACATCTAATTATGAT-GCGTTTTAATAAAAAACAACAAAGCTTTTGATTTATGTTTGATT
116 AGCAAACATCCAATTATGATAG-GTTTTAACCAAGAACAACAAAACCTTCGACTTAT-TTTAATT
* * * * * * *
273744 TATAATCGTTTATAAGATTATAAATAAATTATATATCGTAATATTAATGATAATATGCTATCCAA
179 TATAATCATTTATATGATTATAAATGAATTATATAACATAATATTGATGATAATATGATAT-CAA
* * * * * **
273809 AA-GATAATTATTCAATGATAAACTATTTCAAGCTTTCAAAGGCATGATTATCTTAAAATCCTCT
243 AATGATAATGATTCATTGATAAACCATTTCAAGCTTTCAAAAGCATGATAAAGTTAAAATCCTCT
* *
273873 TTTCTTGTCAAAGGATAACAT
308 TTTCTAGTCAAAAGATAACAT
273894 AATATAGATG
Statistics
Matches: 641, Mismatches: 112, Indels: 76
0.77 0.14 0.09
Matches are distributed among these distances:
447 9 0.01
448 280 0.44
449 18 0.03
450 57 0.09
451 8 0.01
452 1 0.00
453 2 0.00
454 1 0.00
459 4 0.01
460 2 0.00
461 46 0.07
462 24 0.04
463 177 0.28
464 12 0.02
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (448 bp):
TAATATTGATGATAATATGTTATTAAAATGATAATTATTCATTGATAACTATTTCAAGCTTTCAA
AGCAAGATAAACTTAAAATGCTCTTTTTTGTCAATGGATAGCTTTCCCAAAGCAAACATCCAATT
ATGATAGGTTTTAACCAAGAACAACAAAACCTTCGACTTATTTTAATTTATAATCATTTATATGA
TTATAAATGAATTATATAACATAATATTGATGATAATATGATATCAAAATGATAATGATTCATTG
ATAAACCATTTCAAGCTTTCAAAAGCATGATAAAGTTAAAATCCTCTTTTCTAGTCAAAAGATAA
CATCCACTTCATACTTCCCAATGCAAACATCTAATTAAGATAAGTTTTAACCATGAACAACAAAG
CTTTCAATTAATTTTCGACTTATAATAATTTATAAAAATAAATATGAATTATAGATCA
Found at i:273839 original size:231 final size:231
Alignment explanation
Indices: 272640--273889 Score: 1156
Period size: 232 Copynumber: 5.5 Consensus size: 231
272630 TTTCAATTTG
* * *
272640 TAATATTGATGATAATATGCTATCAAAATGATAATTATTCATTGATAAACCATTTCAAGCTTTCG
1 TAATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGCTTTCA
* * * * * * *
272705 AA-GCATTATAAACTTAAAATGCTCTTTT-TTCCTCACTTGATGGCATCCACTTCA-GCTTTCCC
66 AAGGCATGATAAACTTAAAATACTCTTTTCTT-GTCAATGGATAGCATCTACTTCATG-TTTCCC
* * * *
272767 AAAGCAAACATCCAATTATGATAGGTTTTAACCAAGAACAAGAAAACTTTTGATTTATTTTGAAT
129 AATGCAAACATCTAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTTGATTTATTTTG-AT
* *
272832 TTATAATCATTTATATGATTATAAATGAATTATATAACA
193 TTATAATCATTTATAAGATTATAAATGAATTATATATCA
* *
272871 TAATATTGATGATAATATGTTATTAAAATGATAATGATTCATTGATAAACCT-TTTCAAGCTTTC
1 TAATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAA-CTATTTCAAGCTTTC
* * * * **
272935 AAAAGCATGATAAAGTTAAAATCCTCTTTTCTAGTCAAAAGAT-GACATCTACTTCATGTTTCCC
65 AAAGGCATGATAAACTTAAAATACTCTTTTCTTGTCAATGGATAG-CATCTACTTCATGTTTCCC
* * * *** * *
272999 AATGCAAGCATTTAATTATGATAAGTTTTAATTGAGAACAACAAAGCTTTCGATTAATTTTCGAT
129 AATGCAAACATCTAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTTGATTTATTTT-GAT
* *
273064 TTGTAATAATTTATAAGATTATAAATGAATTATATATCA
193 TTATAATCATTTATAAGATTATAAATGAATTATATATCA
* * *
273103 TAATATAGATGATAATATGTTGTTAAAATGATAATTATTCATTGAT-AACTATTTCAAGCTTTCA
1 TAATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGCTTTCA
* * * * *
273167 AAGACAAGATAAACTTAAAATGCTCTTTTATTGTCAATGGATAG---------C---TTT-CCTA
66 AAGGCATGATAAACTTAAAATACTCTTTTCTTGTCAATGGATAGCATCTACTTCATGTTTCCCAA
* * * * * *
273219 TGCAAACATCCAATTATGATAGGTTTTAACCAAGAATAACAAAGCCTTCGACTTGTTTT-ATTTA
131 TGCAAACATCTAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTTGATTTATTTTGATTTA
* * *
273283 TAATCATTTATGAGATTTTAAATGAATTATGTATCA
196 TAATCATTTATAAGATTATAAATGAATTATATATCA
* * * * *
273319 TAATATTGATGA-AGATATGATGTCAAAATGATAATTTTTTATTGATAAAGC-ATTTCATG-TCT
1 TAATATTGATGATA-ATATGTTATCAAAATGATAATTATTCATTGATAAA-CTATTTCAAGCT-T
* * * * * * * ** * * **
273381 T-AGAATGCATTATAAA-TTCTATATGCTTTTTTCATGTCAATAAATAACATCCACTTCATACTT
63 TCA-AAGGCATGATAAACTT-AAAATACTCTTTTCTTGTCAATGGATAGCATCTACTTCATGTTT
* * * * * * *
273444 CCCAATGCAAATATCTAGTTAAGATAGGTTTTAACCATGAATAATAAAGCTTTTAATTTATTTTT
126 CCCAATGCAAACATCTAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTTGATTTA-TTTT
* * * * * * * *
273509 GACTTATAGTCATTTGTAAAAATA-AATATGAATTGTAGATCG
190 GATTTATAATCATTTATAAGATTATAA-ATGAATTATATATCA
* * * * **
273551 TAATATTGATGATAATATGTTATTAAAATGTTAATTTTTCATTGACAAA-TCATTTCAAAATTTC
1 TAATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACT-ATTTCAAGCTTTC
* * * * **
273615 TAAGGCA-GATAAACTTAATATATTCATTTCTTGTCAATGGATAGCATCTACTTCATGTTTCTTA
65 AAAGGCATGATAAACTTAAAATACTCTTTTCTTGTCAATGGATAGCATCTACTTCATGTTTCCCA
** *
273679 ATGCAAACATCTAATTATGAT-GCGTTTTAATAAAAAACAACAAAGCTTTTGATTTATGTTTGAT
130 ATGCAAACATCTAATTATGATAG-GTTTTAACCAAGAACAACAAAGCTTTTGATTTAT-TTTGAT
* * *
273743 TTATAATCGTTTATAAGATTATAAATAAATTATATATCG
193 TTATAATCATTTATAAGATTATAAATGAATTATATATCA
* * *
273782 TAATATTAATGATAATATGCTATCCAAAA-GATAATTATTCAATGATAAACTATTTCAAGCTTTC
1 TAATATTGATGATAATATGTTAT-CAAAATGATAATTATTCATTGATAAACTATTTCAAGCTTTC
* * * *
273846 AAAGGCATGATTATCTTAAAATCCTCTTTTCTTGTCAAAGGATA
65 AAAGGCATGATAAACTTAAAATACTCTTTTCTTGTCAATGGATA
273890 ACATAATATA
Statistics
Matches: 814, Mismatches: 163, Indels: 83
0.77 0.15 0.08
Matches are distributed among these distances:
215 1 0.00
216 79 0.10
217 40 0.05
218 51 0.06
219 3 0.00
222 1 0.00
226 1 0.00
229 2 0.00
230 51 0.06
231 285 0.35
232 295 0.36
233 5 0.01
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (231 bp):
TAATATTGATGATAATATGTTATCAAAATGATAATTATTCATTGATAAACTATTTCAAGCTTTCA
AAGGCATGATAAACTTAAAATACTCTTTTCTTGTCAATGGATAGCATCTACTTCATGTTTCCCAA
TGCAAACATCTAATTATGATAGGTTTTAACCAAGAACAACAAAGCTTTTGATTTATTTTGATTTA
TAATCATTTATAAGATTATAAATGAATTATATATCA
Found at i:274884 original size:231 final size:231
Alignment explanation
Indices: 274075--275909 Score: 1180
Period size: 231 Copynumber: 8.0 Consensus size: 231
274065 NNNNNNNNNN
* * * *
274075 CATAATATTGATGATAATATGTTAT-AAAAATA-ACATTATTCATTAATAACCCATTTCTAGCTT
1 CATAATATTGATGATAATATGTTATCAAAATTATA-AGTATTCATTAATAAACCATTTCAAGCTT
* * * * *
274138 TCGAAGGCATAATAAACTTAAAATCCTC-TTTCTTG-CTAATGGATAACATCCACTTCATATTTT
65 TCGAAGGCATGATAAACTTAAAATGCTCTTTTCTAGTC-AATGGATAGCATCCACTTCAAATTTT
* * * * *
274201 CCAATGCAAACATCCAATTATGATAGGTTTTAACTAAGAACAGCAAAGCTTTCA-ATTCATTTTC
129 TCAATGCAAACATCCAATTATCATAGGTTTTAACTAAGAACAACAAA-ATTT-AGATTCATTTTT
274265 GATTTATAATCAT-TATAAGATTATAAATGAATTATATAT
192 GATTTATAATCATATATAAGATTATAAATGAATTATATAT
* ** * * * * *
274304 CATAATGTTGATGATAATACATAATCAGAATGATAA-TGATTCATTTATAAACCATTTCAAGCTC
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGT-ATTCATTAATAAACCATTTCAAGCTT
* * * *
274368 TCAAAGGGATGATAAACTTAAAATGCTCTTTT-T-TTCTAATGGAT-GACATCCACTTCACATTT
65 TCGAAGGCATGATAAACTTAAAATGCTCTTTTCTAGTC-AATGGATAG-CATCCACTTCAAATTT
** * * * * * * * *
274430 CTT-AAAACAAATATCCAATTA-CAATGGGTTTTAA-TGAAAAAAAATAAAGCTTTTGATTTATT
128 -TTCAATGCAAACATCCAATTATC-ATAGGTTTTAACT-AAGAACAACAAA-ATTTAGATTCATT
*
274492 TTTGATTTATAGTCA-ATTATAAGATTATAAATGAATTATATATT
189 TTTGATTTATAATCATA-TATAAGATTATAAATGAATTATATA-T
* * * * * * * *
274536 TACAATATTGATGATAATATGTTGTAAAAATTATAAATATTCATTGATAAACAATTTCAAGTTTT
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
* * * * *
274601 CGAAGGCATGATAAA-TATAAAACGCTCTTTTTTTA-TAAATGAATAACATCCACTTCAAATTTT
66 CGAAGGCATGATAAACT-TAAAATGCTC-TTTTCTAGTCAATGGATAGCATCCACTTCAAATTTT
** * * * * *
274664 TCAATATAAA-ATTCAATTATCATAGGTTTTAACCAAGAATAACAAAATAGTAGATTCATTTTTT
129 TCAATGCAAACATCCAATTATCATAGGTTTTAACTAAGAACAACAAAAT-TTAGATTCATTTTTG
* *
274728 ATTTGTAATTATATATAAGATTATAAATGAATTATATAT
193 ATTTATAATCATATATAAGATTATAAATGAATTATATAT
* *
274767 CATAATATTGATGATAATACGTTATCAAAATTTTAAGTATTCATTAATAAACCATTTCAAGCTTT
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
* **
274832 CGAAGGCATGAGAAACTTAAAATG-TGCTTTTCTAGTCAATGGATAGCATCCACTTCATGTTTTT
66 CGAAGGCATGATAAACTTAAAATGCT-CTTTTCTAGTCAATGGATAGCATCCACTTCAAATTTTT
* * * * *
274896 CAATGCAAACATCCAATTATGATAGGTTTTAAGTGAGATA-AA-AAAGCTTTCGATAT-ATTTTT
130 CAATGCAAACATCCAATTATCATAGGTTTTAACTAAGA-ACAACAAA-ATTTAGAT-TCATTTTT
* * *
274958 TATTTATAATCATTTATAA-ATTTATAAATAAATTATATAT
192 GATTTATAATCATATATAAGA-TTATAAATGAATTATATAT
* * * * * * *
274998 CATAATATTGCTTATAATATGTTATCAAAATTACAATTATTCATTAATAAAGCATTTGAAGCTGT
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
** * * * * * * * * **
275063 CGAAGGGGTTG-TAAACTTAAAATGTTATTTTTTTTGTCAATGGCTAGAATCGACTT-TACGTTT
66 CGAA-GGCATGATAAACTTAAAATGCT-CTTTTCTAGTCAATGGATAGCATCCACTTCAAATTTT
* * * * * * *
275126 CCTAATGTAAAAATCCAATTATCGTAGGTTTTAACTAA-AACAACAAAGTTTTTGATTGATTTTT
129 TC-AATGCAAACATCCAATTATCATAGGTTTTAACTAAGAACAACAAA-ATTTAGATTCATTTTT
* * *
275190 GATTTATAATCATA-ATAAGATTATAACTAAATTTTATAT
192 GATTTATAATCATATATAAGATTATAAATGAATTATATAT
* * * * * * *
275229 CACAATATTGATGATAATATGTTCTTAATATTTTAATGT-TTCATTAATAAACAATTTCTAGCTT
1 CATAATATTGATGATAATATGTTATCAAAATTATAA-GTATTCATTAATAAACCATTTCAAGCTT
* * * * * * * ** ** *
275293 TCAAAGGCATGAGAAACTGAAAATGCTATTTTCTTGTCAGTGGGTAATATTTACTT--TATGTTT
65 TCGAAGGCATGATAAACTTAAAATGCTCTTTTCTAGTCAATGGATAGCATCCACTTCAAAT-TTT
*** * * * * *
275356 TCTACCACAAACATCCAATTATGAAAGGTTTTAAGC-AA-AACGAACAAAGCTTTCGATTTA-TT
129 TC-AATGCAAACATCCAATTATCATAGGTTTTAA-CTAAGAAC-AACAAA-ATTTAGATTCATTT
* * ** * * * * *
275418 TTCAATTATTTTTATTTATCATATTATAAATGAATTATACAT
190 TTGATTTATAATCATATATAAGATTATAAATGAATTATATAT
** * * *
275460 TGTAATATTAATGATAATATGTTATCAAAATTATAATTATTCACTAATAAACCATTTCAAGCTTT
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
* * * * * * * **
275525 C-AAAGCATGAAAAAACCTT-CAATGCACTTTTTTTTGTTAATGGATAGCATCCACTTCATGTTT
66 CGAAGGCATG-ATAAA-CTTAAAATGCTC-TTTTCTAGTCAATGGATAGCATCCACTTCAAATTT
* * * * * *
275588 TCCTATGCAAACATCCAATTATAATAGG---T-ACCAA-AAGCAAC-AAA---GGTTTCA-----
128 TTCAATGCAAACATCCAATTATCATAGGTTTTAACTAAGAA-CAACAAAATTTAGATTCATTTTT
* * * *
275639 -ATTTATAATCATTTAAAAGATCCA-AAATGAATT-TCAAAT
192 GATTTATAATCATATATAAGAT-TATAAATGAATTAT-ATAT
* * * * * * *
275678 CATAATATTGATGTTAATATATTGTCAAAATGATAATTATTCGTTGAT-AACCATTTCAAGCTTT
1 CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
* * * * * * **
275742 CCAAGTC-TAGATAAGCTGAGAATGCTCTTTTCTTA-TCAAAGGATAGCATCCA-TTACATGTTT
66 CGAAGGCAT-GATAAACTTAAAATGCTCTTTTC-TAGTCAATGGATAGCATCCACTT-CAAATTT
* ** * * * * *
275804 TTCAATGTAAACATCCAATTATGGTGGGTTTTAA-TCAACAACAACAAAGCTTTCGATTGATTTT
128 TTCAATGCAAACATCCAATTATCATAGGTTTTAACT-AAGAACAACAAA-ATTTAGATTCATTTT
** * *
275868 CAATTTATAGTC--A-A-AAGATTATAAATAAATTATATAT
191 TGATTTATAATCATATATAAGATTATAAATGAATTATATAT
275905 CATAA
1 CATAA
275910 GATTATAAAT
Statistics
Matches: 1251, Mismatches: 276, Indels: 160
0.74 0.16 0.09
Matches are distributed among these distances:
215 2 0.00
216 50 0.04
217 29 0.02
218 68 0.05
219 2 0.00
220 7 0.01
221 4 0.00
223 4 0.00
225 4 0.00
226 1 0.00
227 24 0.02
228 10 0.01
229 25 0.02
230 220 0.18
231 457 0.37
232 301 0.24
233 39 0.03
234 4 0.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.38
Consensus pattern (231 bp):
CATAATATTGATGATAATATGTTATCAAAATTATAAGTATTCATTAATAAACCATTTCAAGCTTT
CGAAGGCATGATAAACTTAAAATGCTCTTTTCTAGTCAATGGATAGCATCCACTTCAAATTTTTC
AATGCAAACATCCAATTATCATAGGTTTTAACTAAGAACAACAAAATTTAGATTCATTTTTGATT
TATAATCATATATAAGATTATAAATGAATTATATAT
Found at i:274944 original size:463 final size:456
Alignment explanation
Indices: 274078--275904 Score: 1432
Period size: 462 Copynumber: 4.0 Consensus size: 456
274068 NNNNNNNCAT
* *
274078 AATATTGATGATAATATGTTATAAAAA-TA-ACATTATTCATTAATAACCCATTTCTAGCTTTCG
1 AATATTGATGATAATATGTTATAAAAATTATA-ATTATTCATTAATAAACCATTTCAAGCTTTCG
* * ** *
274141 AAGGCATAATAAACTTAAAATC-CTCTTTCTTGCTAATGGATAACATCCACTTCATATTTTCCAA
65 AAGGCATGATAAACTTAAAA-CGCTCTTTTTTTATAATGGATAACATCCACTTCAAATTTTCCAA
* * * * *
274205 TGCAAACATCCAATTATGATAGGTTTTAACTAAGAACAGCAAAGCTTTCA-ATTCATTTTCGATT
129 TGTAAA-ATCCAATTATCATAGGTTTTAACTAAGAACAACAAA-ATTT-AGATTCATTTTTGATT
* * * *
274269 TATAATCAT-TATAAGATTATAAATGAATTATATATCATAATGTTGATGATAATACATAATCAGA
191 TATAATCATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATCAAA
** * * * *
274333 ATGATAA-TGATTCATTTATAAACCATTTCAAGCTCTCAAAGGGATGATAAACTTAAAATGCTCT
256 ATTTTAAGT-ATTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGCTCT
* ** * * ** *
274397 TTT-TTTCTAATGGAT-GACATCCACTTCACATTTCTTAAAACAAATATCCAATTACAATGGGTT
320 TTTCTGTC-AATGGATAG-CATCCACTTCATGTTT-TT-CAACAAACATCCAATTATGATAGGTT
* * * *
274460 TTAA-TGAAAAAAAATAAAGCTTTTGATTTATTTTTGATTTATAGTCAATTATAAGATTATAAAT
381 TTAAGTG-AAAAAAA-AAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAA-ATTATAAAT
274524 GAATTATATATTTA
443 GAATTATATATTTA
* * * * *
274538 CAATATTGATGATAATATGTTGTAAAAATTATAAATATTCATTGATAAACAATTTCAAGTTTTCG
1 -AATATTGATGATAATATGTTATAAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCG
* *
274603 AAGGCATGATAAA-TATAAAACGCTCTTTTTTTATAAATGAATAACATCCACTTCAAATTTTTCA
65 AAGGCATGATAAACT-TAAAACGCTCTTTTTTTAT-AATGGATAACATCCACTTCAAATTTTCCA
* * * * * *
274667 ATATAAAATTCAATTATCATAGGTTTTAACCAAGAATAACAAAATAGTAGATTCATTTTTTATTT
128 ATGTAAAATCCAATTATCATAGGTTTTAACTAAGAACAACAAAAT-TTAGATTCATTTTTGATTT
* *
274732 GTAATTATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATCAAAA
192 ATAATCATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATCAAAA
*
274797 TTTTAAGTATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAGAAACTTAAAATG-TGCTT
257 TTTTAAGTATTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGCT-CTT
274861 TTCTAGTCAATGGATAGCATCCACTTCATGTTTTTCAATGCAAACATCCAATTATGATAGGTTTT
321 TTCT-GTCAATGGATAGCATCCACTTCATGTTTTTCAA--CAAACATCCAATTATGATAGGTTTT
* * * * *
274926 AAGTGAGATAAAAAAGCTTTCGATATATTTTTTATTTATAATCATTTATAAATTTATAAATAAAT
383 AAGTGAAAAAAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAAA-TTATAAATGAAT
*
274991 TATATA-TCA
447 TATATATTTA
* * * * * * *
275000 TAATATTGCTTATAATATGTTATCAAAATTACAATTATTCATTAATAAAGCATTTGAAGCTGTCG
1 -AATATTGATGATAATATGTTATAAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCG
** * * * * * * * **
275065 AAGGGGTTG-TAAACTTAAAATGTTATTTTTTTTGTCAATGGCTAGA-ATCGACTT-TACGTTTC
65 AA-GGCATGATAAACTTAAAACGCT-CTTTTTTTAT-AATGGATA-ACATCCACTTCAAATTTTC
* * * *
275127 CTAATGTAAAAATCCAATTATCGTAGGTTTTAACTAA-AACAACAAAGTTTTTGATTGATTTTTG
126 C-AATGT-AAAATCCAATTATCATAGGTTTTAACTAAGAACAACAAA-ATTTAGATTCATTTTTG
* * * * * * *
275191 ATTTATAATCATA-ATAAGATTATAACTAAATTTTATATCACAATATTGATGATAATATGTTCTT
188 ATTTATAATCATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATC
* * * *
275255 AATATTTTAATGT-TTCATTAATAAACAATTTCTAGCTTTCAAAGGCATGAGAAACTGAAAATGC
253 AAAATTTTAA-GTATTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGC
* * * ** ** * * *
275319 TATTTTCTTGTCAGTGGGTAATATTTACTTTATGTTTTCTACCACAAACATCCAATTATGAAAGG
317 TCTTTTC-TGTCAATGGATAGCATCCACTTCATGTTTT-T-CAACAAACATCCAATTATGATAGG
* * * ** * *
275384 TTTTAAG-CAAAACGAACAAAGCTTTCGATTTA-TTTTCAATTATTTTTATTTATCATATTATAA
379 TTTTAAGTGAAAA--AAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTAT-AAATTATAA
*
275447 ATGAATTATACATTGT-
441 ATGAATTATATATT-TA
* * *
275463 AATATTAATGATAATATGTTATCAAAATTATAATTATTCACTAATAAACCATTTCAAGCTTTC-A
1 AATATTGATGATAATATGTTATAAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCGA
* * * * * * * **
275527 AAGCATGAAAAAACCTT-CAATGCACTTTTTTTTGTTAATGGATAGCATCCACTTCATGTTTTCC
66 AGGCATG-ATAAA-CTTAAAACGCTC-TTTTTTT-ATAATGGATAACATCCACTTCAAATTTTCC
* * * * * *
275591 TATGCAAACATCCAATTATAATAGG---T-ACCAA-AAGCAAC-AAA---GGTTTCA------AT
127 AATGTAAA-ATCCAATTATCATAGGTTTTAACTAAGAA-CAACAAAATTTAGATTCATTTTTGAT
* * * * * ** *
275641 TTATAATCATTTAAAAGATCCA-AAATGAATT-TCAAATCATAATATTGATGTTAATATATTGTC
190 TTATAATCATATATAAGAT-TATAAATGAATTAT-ATATCATAATATTGATGATAATACGTTATC
** * * * * * * *
275704 AAAATGATAATTATTCGTTGAT-AACCATTTCAAGCTTTCCAAGTC-T-AGATAAGCTGAGAATG
253 AAAATTTTAAGTATTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGA-AA-CTTAAAATG
* * * * *
275766 CTCTTTTCTTATCAAAGGATAGCATCCA-TTACATGTTTTTCAATGTAAACATCCAATTATGGTG
316 CTCTTTTC-TGTCAATGGATAGCATCCACTT-CATGTTTTTCAA--CAAACATCCAATTATGATA
* * * *
275830 GGTTTTAA-TCAACAACAACAAAGCTTTCGATTGA-TTTTCAATTTATAGTCA---A-AAGATTA
377 GGTTTTAAGTGAA-AA-AAAAAAGCTTTCGATTTATTTTTC-ATTTATAATCATTTATAA-ATTA
*
275889 TAAATAAATTATATAT
438 TAAATGAATTATATAT
275905 CATAAGATTA
Statistics
Matches: 1101, Mismatches: 209, Indels: 128
0.77 0.15 0.09
Matches are distributed among these distances:
444 1 0.00
445 18 0.02
446 6 0.01
447 6 0.01
448 115 0.10
449 60 0.05
450 1 0.00
454 4 0.00
458 8 0.01
459 5 0.00
460 3 0.00
461 37 0.03
462 466 0.42
463 285 0.26
464 81 0.07
465 5 0.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (456 bp):
AATATTGATGATAATATGTTATAAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCGA
AGGCATGATAAACTTAAAACGCTCTTTTTTTATAATGGATAACATCCACTTCAAATTTTCCAATG
TAAAATCCAATTATCATAGGTTTTAACTAAGAACAACAAAATTTAGATTCATTTTTGATTTATAA
TCATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATCAAAATTTT
AAGTATTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGCTCTTTTCTG
TCAATGGATAGCATCCACTTCATGTTTTTCAACAAACATCCAATTATGATAGGTTTTAAGTGAAA
AAAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAAATTATAAATGAATTATATATTT
A
Found at i:275377 original size:694 final size:691
Alignment explanation
Indices: 274075--275616 Score: 1638
Period size: 694 Copynumber: 2.2 Consensus size: 691
274065 NNNNNNNNNN
* * * *
274075 CATAATATTGATGATAATATGTTAT-AAAA-ATAACATTATTCATTAATAACCCATTTCTAGCTT
1 CATAATATTGATGATAATATGTTATCAAAATTTTA-ATTATTCATTAATAAACCATTTCAAGCTT
* * *
274138 TCGAAGGCAT-AATAAACTTAAAA--TCCTCTTTCTTG-CTAATGGATAACATCCACTTCATATT
65 TCGAAGGCATGAA-AAACTTAAAATGTACT-TTTCTTGTC-AATGGATAGCATCCACTTCATGTT
*
274199 TTCCAATGCAAACATCCAATTATGATAGGTTTTAACTAAGAACAGCAAAGCTTTCAATTCATTTT
127 TTCCAATGCAAACATCCAATTATGATAGGTTTTAACTAAGAACAGAAAAGCTTTCAATTCATTTT
* *
274264 CGATTTATAATCATTATAAGATTATAAATGAATTATATATCATAATGTTGATGATAATACATAAT
192 CGATTTATAATCATTATAAGATTATAAATAAATTATATATCATAATATTGATGATAATACATAAT
* * *
274329 CAGAATGATAATGATTCATTTATAAACCATTTCAAGCTCTCAAAGGGATGATAAACTTAAAATGC
257 CAAAATGACAATGATTCATTAATAAACCATTTCAAGCTCTCAAAGGGATGATAAACTTAAAATGC
* * *
274394 TCTTTTTTTCTAATGGATGACATCCACTTCACATTTCTTAAAACAAATATCCAATTACAATGGGT
322 TCTTTTTTTCTAATGGATGACATCCACTTCACATTTCCTAAAACAAAAATCCAATTACAATAGGT
* * * *
274459 TTTAATGAAAAAAAATAAAGCTTTTGATTTATTTTTGATTTATAGTCAATTATAAGATTATAAAT
387 TTTAAT-AAAAAAAACAAAGCTTTTGATTGATTTTTGATTTATAATCAATAATAAGATTATAAAT
* * * *
274524 GAATTATATATTTACAATATTGATGATAATATGTTGTAAAAATTATAAATATTCATTGATAAACA
451 AAATTATATATTCACAATATTGATGATAATATGTTCTAAAAATTATAAATATTCATTAATAAACA
* * * * * *
274589 ATTTCAAGTTTTCGAAGGCATGATAAATATAAAACGCTCTTTTTTTATAAATGAATAACATCCAC
516 ATTTCAAGCTTTCAAAGGCATGAGAAATAGAAAACGCTATTTTCTTATAAATGAATAACATCCAC
* * * * *
274654 TTCAAATTTTTCAATATAAAATTCAATTATCATAGGTTTTAACCAAGAA-TAACAAA-ATAGTAG
581 TT-AAATTTTTCAACACAAAATCCAATTATCAAAGGTTTTAACCAA-AACGAACAAAGAT-GTAG
** *
274717 ATTCATTTTTTATT-TGTAATTATATATAAGATTATAAATGAATTATATAT
643 ATTCATTTTCAATTAT-T-ATTATATATAAGATTATAAATGAATTATACAT
* *
274767 CATAATATTGATGATAATACGTTATCAAAATTTTAAGTATTCATTAATAAACCATTTCAAGCTTT
1 CATAATATTGATGATAATATGTTATCAAAATTTTAATTATTCATTAATAAACCATTTCAAGCTTT
* * * *
274832 CGAAGGCATGAGAAACTTAAAATGTGCTTTTCTAGTCAATGGATAGCATCCACTTCATGTTTTTC
66 CGAAGGCATGAAAAACTTAAAATGTACTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC
* * * **
274897 AATGCAAACATCCAATTATGATAGGTTTTAAGTGAGATA-A-AAAAGCTTTCGATAT-ATTTTTT
131 AATGCAAACATCCAATTATGATAGGTTTTAACTAAGA-ACAGAAAAGCTTTCAAT-TCATTTTCG
* * ** *
274959 ATTTATAATCATTTATAA-ATTTATAAATAAATTATATATCATAATATTGCTTATAATATGTTAT
194 ATTTATAATCA-TTATAAGA-TTATAAATAAATTATATATCATAATATTGATGATAATACATAAT
* * * * * * *
275023 CAAAATTACAATTATTCATTAATAAAGCATTTGAAGCTGTCGAAGGGGTTG-TAAACTTAAAATG
257 CAAAATGACAATGATTCATTAATAAACCATTTCAAGCTCTC-AAAGGGATGATAAACTTAAAATG
* * * * * * * *** *
275087 TTATTTTTTTTGTCAATGGCTAGA-ATCGACTTTACGTTTCCTAATGTAAAAATCCAATTATC-G
321 CT-CTTTTTTTCT-AATGGAT-GACATCCACTTCACATTTCCTAAAACAAAAATCCAATTA-CAA
* *
275150 TAGGTTTTAACT-AAAACAACAAAGTTTTTGATTGATTTTTGATTTATAATC-ATAATAAGATTA
382 TAGGTTTTAA-TAAAAAAAACAAAGCTTTTGATTGATTTTTGATTTATAATCAATAATAAGATTA
* * * * * *
275213 TAACTAAATTTTATA-TCACAATATTGATGATAATATGTTCTTAATATT-TTAATGTTTCATTAA
446 TAAATAAATTATATATTCACAATATTGATGATAATATGTTCTAAAAATTATAAAT-ATTCATTAA
* * * * * **
275276 TAAACAATTTCTAGCTTTCAAAGGCATGAGAAACT-GAAAATGCTATTTTCTTGTCAGTGGGTAA
510 TAAACAATTTCAAGCTTTCAAAGGCATGAGAAA-TAGAAAACGCTATTTTCTTATAAATGAATAA
* ** * * * *
275340 TATTTACTT-TATGTTTTCTACCACAAACATCCAATTATGAAAGGTTTTAAGCAAAACGAACAAA
574 CATCCACTTAAAT-TTTTC-AACACAAA-ATCCAATTATCAAAGGTTTTAACCAAAACGAACAAA
* * * * * * * *
275404 GCTTTCGATTTATTTTCAATTATTTTTATTTATCATATTATAAATGAATTATACAT
636 GATGTAGATTCATTTTCAATTATTATTATATATAAGATTATAAATGAATTATACAT
** * * *
275460 TGTAATATTAATGATAATATGTTATCAAAATTATAATTATTCACTAATAAACCATTTCAAGCTTT
1 CATAATATTGATGATAATATGTTATCAAAATTTTAATTATTCATTAATAAACCATTTCAAGCTTT
* * * * *
275525 C-AAAGCATGAAAAAACCTT-CAATGCACTTTTTTTTGTTAATGGATAGCATCCACTTCATGTTT
66 CGAAGGCATG-AAAAA-CTTAAAATGTAC-TTTTCTTGTCAATGGATAGCATCCACTTCATGTTT
* *
275588 TCCTATGCAAACATCCAATTATAATAGGT
128 TCCAATGCAAACATCCAATTATGATAGGT
275617 ACCAAAAGCA
Statistics
Matches: 704, Mismatches: 119, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
691 2 0.00
692 40 0.06
693 271 0.38
694 288 0.41
695 56 0.08
696 43 0.06
697 4 0.01
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (691 bp):
CATAATATTGATGATAATATGTTATCAAAATTTTAATTATTCATTAATAAACCATTTCAAGCTTT
CGAAGGCATGAAAAACTTAAAATGTACTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTTCC
AATGCAAACATCCAATTATGATAGGTTTTAACTAAGAACAGAAAAGCTTTCAATTCATTTTCGAT
TTATAATCATTATAAGATTATAAATAAATTATATATCATAATATTGATGATAATACATAATCAAA
ATGACAATGATTCATTAATAAACCATTTCAAGCTCTCAAAGGGATGATAAACTTAAAATGCTCTT
TTTTTCTAATGGATGACATCCACTTCACATTTCCTAAAACAAAAATCCAATTACAATAGGTTTTA
ATAAAAAAAACAAAGCTTTTGATTGATTTTTGATTTATAATCAATAATAAGATTATAAATAAATT
ATATATTCACAATATTGATGATAATATGTTCTAAAAATTATAAATATTCATTAATAAACAATTTC
AAGCTTTCAAAGGCATGAGAAATAGAAAACGCTATTTTCTTATAAATGAATAACATCCACTTAAA
TTTTTCAACACAAAATCCAATTATCAAAGGTTTTAACCAAAACGAACAAAGATGTAGATTCATTT
TCAATTATTATTATATATAAGATTATAAATGAATTATACAT
Found at i:275433 original size:16 final size:18
Alignment explanation
Indices: 275412--275444 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
275402 AAGCTTTCGA
275412 TTTATTT-TCA-ATTATT
1 TTTATTTATCATATTATT
275428 TTTATTTATCATATTAT
1 TTTATTTATCATATTAT
275445 AAATGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTATTTATCATATTATT
Found at i:275606 original size:462 final size:460
Alignment explanation
Indices: 274077--275609 Score: 1486
Period size: 462 Copynumber: 3.3 Consensus size: 460
274067 NNNNNNNNCA
* * *
274077 TAATATTGATGATAATATGTTAT-AAAAATA-ACATTATTCATTAATAACCCATTTCTAGCTTTC
1 TAATATTGATGATAATATGTTATCAAAATTATA-ATTATTCATTAATAAACCATTTCAAGCTTTC
* * * *
274140 GAAGGCAT-AATAAACTTAAAAT-C-CTCTTTCTTGCTAATGGATAACATCCACTTCATATTTTC
65 GAAGGCATGAAAAAACTTAAAATGCACTTTTTTTTGTTAATGGATAACATCCACTTCATATTTTC
* * *
274202 CAATGCAAACATCCAATTAT-GATAGGTTTTAACTAAGAACAGCAAAGCTTTCA-ATTCATTTTC
130 CAATGCAAACATCCAATTATCG-TAGGTTTTAACTAAGAACAACAAAG-TTTTAGATTCATTTTT
* * * *
274265 GATTTATAATCATTATAAGATTATAAATGAATTATATATCATAATGTTGATGATAATACATAATC
193 GATTTATAATCATAATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATC
** * * * * *
274330 AGAATGATAATGATTCATTTATAAACCATTTCAAGCTCTCAAAGGGATGATAAACTTAAAATGCT
258 A-AATTTTAATGTTTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGCT
* ** * * * *
274395 CTTTT-TT-TCTAATGGATGACATCCACTTCA-CATTTCTTAAAACAAATATCCAATTA-CAATG
322 CTTTTCTTGTC-AATGGATAACATCCACTTCATGTTTTC-TACAACAAACATCCAATTATGAA-A
* * * *
274456 GGTTTTAATGAAAAAAAATAAAGCTTTTGATTTATTTTTGATTTATAGTCAATTATAAGATTATA
384 GGTTTTAA-GAAAAAAAA-AAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAA-ATTATA
274521 AATGAATTATATATT
446 AATGAATTATATATT
* * * * * *
274536 TACAATATTGATGATAATATGTTGTAAAAATTATAAATATTCATTGATAAACAATTTCAAGTTTT
1 T--AATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTT
* * * * * * *
274601 CGAAGGCATG-ATAAA-TATAAAACGCTC-TTTTTTTATAAATGAATAACATCCACTTCAAATTT
64 CGAAGGCATGAAAAAACT-TAAAATGCACTTTTTTTTGTTAATGGATAACATCCACTTCATATTT
* ** * * * * * **
274663 TTCAATATAAA-ATTCAATTATCATAGGTTTTAACCAAGAATAACAAAATAGTAGATTCATTTTT
128 TCCAATGCAAACATCCAATTATCGTAGGTTTTAACTAAGAACAACAAAGTTTTAGATTCATTTTT
* * *
274727 TATTTGTAATTATATATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTAT
193 GATTTATAATCATA-ATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTAT
*
274792 CAAAATTTTAA-GTATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAGAAACTTAAAATG
257 C-AAATTTTAATGT-TTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATG
* *
274856 -TGCTTTTCTAGTCAATGGATAGCATCCACTTCATGTTTT-T-CAATGCAAACATCCAATTATGA
320 CT-CTTTTCTTGTCAATGGATAACATCCACTTCATGTTTTCTACAA--CAAACATCCAATTATGA
* * * * * *
274918 TAGGTTTTAAGTGAGATAAAAAAGCTTTCGATATATTTTTTATTTATAATCATTTATAAATTTAT
382 AAGGTTTTAAG-AAAAAAAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAAA-TTAT
* *
274983 AAATAAATTATATATCA
445 AAATGAATTATATAT-T
* * * * * *
275000 TAATATTGCTTATAATATGTTATCAAAATTACAATTATTCATTAATAAAGCATTTGAAGCTGTCG
1 TAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCG
** * * * * * *
275065 AAGGGGTTG--TAAACTTAAAATGTTA-TTTTTTTTGTCAATGGCTAGA-ATCGACTT--TACGT
66 AA-GGCATGAAAAAACTTAAAATG-CACTTTTTTTTGTTAATGGATA-ACATCCACTTCATA-TT
* * * *
275124 TTCCTAATGTAAAAATCCAATTATCGTAGGTTTTAACTAA-AACAACAAAGTTTTTGATTGATTT
127 TTCC-AATGCAAACATCCAATTATCGTAGGTTTTAACTAAGAACAACAAAGTTTTAGATTCATTT
* * * * * *
275188 TTGATTTATAATCATAATAAGATTATAACTAAATTTTATATCACAATATTGATGATAATATGTTC
191 TTGATTTATAATCATAATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTA
* * * *
275253 TTAATATTTTAATGTTTCATTAATAAACAATTTCTAGCTTTCAAAGGCATGAGAAACTGAAAATG
256 TCAA-ATTTTAATGTTTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATG
* * * * ** * *
275318 CTATTTTCTTGTCAGTGGGTAATATTTACTTTATGTTTTCTACCACAAACATCCAATTATGAAAG
320 CTCTTTTCTTGTCAATGGATAACATCCACTTCATGTTTTCTACAACAAACATCCAATTATGAAAG
* * * ** * *
275383 GTTTTAAGCAAAACGAACAAAGCTTTCGATTTA-TTTTCAATTATTTTTATTTATCATATTATAA
385 GTTTTAAG-AAAA-AAAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTAT-AAATTATAA
*
275447 ATGAATTATACATT
447 ATGAATTATATATT
* *
275461 GTAATATTAATGATAATATGTTATCAAAATTATAATTATTCACTAATAAACCATTTCAAGCTTTC
1 -TAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTC
* * * *
275526 -AAAGCATGAAAAAACCTT-CAATGCACTTTTTTTTGTTAATGGATAGCATCCACTTCATGTTTT
65 GAAGGCATGAAAAAA-CTTAAAATGCACTTTTTTTTGTTAATGGATAACATCCACTTCATATTTT
*
275589 CCTATGCAAACATCCAATTAT
129 CCAATGCAAACATCCAATTAT
275610 AATAGGTACC
Statistics
Matches: 866, Mismatches: 162, Indels: 89
0.78 0.15 0.08
Matches are distributed among these distances:
459 1 0.00
460 3 0.00
461 30 0.03
462 461 0.53
463 290 0.33
464 75 0.09
465 6 0.01
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (460 bp):
TAATATTGATGATAATATGTTATCAAAATTATAATTATTCATTAATAAACCATTTCAAGCTTTCG
AAGGCATGAAAAAACTTAAAATGCACTTTTTTTTGTTAATGGATAACATCCACTTCATATTTTCC
AATGCAAACATCCAATTATCGTAGGTTTTAACTAAGAACAACAAAGTTTTAGATTCATTTTTGAT
TTATAATCATAATAAGATTATAAATGAATTATATATCATAATATTGATGATAATACGTTATCAAA
TTTTAATGTTTCATTAATAAACCATTTCAAGCTTTCAAAGGCATGAGAAACTTAAAATGCTCTTT
TCTTGTCAATGGATAACATCCACTTCATGTTTTCTACAACAAACATCCAATTATGAAAGGTTTTA
AGAAAAAAAAAAAGCTTTCGATTTATTTTTCATTTATAATCATTTATAAATTATAAATGAATTAT
ATATT
Found at i:275899 original size:11 final size:11
Alignment explanation
Indices: 275885--275953 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
275875 TAGTCAAAAG
275885 ATTATAAATAA
1 ATTATAAATAA
275896 ATTATATATCATAA
1 ATTATA-A--ATAA
275910 GATTATAAATAA
1 -ATTATAAATAA
275922 ATTATATATCATAA
1 ATTATA-A--ATAA
275936 GATTATAAATAA
1 -ATTATAAATAA
275948 ATTATA
1 ATTATA
275954 TATCATAAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
11 18 0.36
12 10 0.20
14 10 0.20
15 12 0.24
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (11 bp):
ATTATAAATAA
Found at i:275916 original size:13 final size:13
Alignment explanation
Indices: 275900--275965 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
275890 AAATAAATTA
275900 TATATCATAAGAT
1 TATATCATAAGAT
*
275913 TATA-AATAA-ATT
1 TATATCATAAGA-T
275925 ATATATCATAAGAT
1 -TATATCATAAGAT
*
275939 TATA-AATAA-ATT
1 TATATCATAAGA-T
275951 ATATATCATAAGAT
1 -TATATCATAAGAT
275965 T
1 T
275966 GATGATAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
11 2 0.05
12 10 0.24
13 17 0.41
14 10 0.24
15 2 0.05
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (13 bp):
TATATCATAAGAT
Found at i:275916 original size:15 final size:14
Alignment explanation
Indices: 275892--275961 Score: 80
Period size: 14 Copynumber: 5.3 Consensus size: 14
275882 AAGATTATAA
275892 ATAAATTATATATC
1 ATAAATTATATATC
275906 ATAAGATTATA-A--
1 ATAA-ATTATATATC
275918 ATAAATTATATATC
1 ATAAATTATATATC
275932 ATAAGATTATA-A--
1 ATAA-ATTATATATC
275944 ATAAATTATATATC
1 ATAAATTATATATC
275958 ATAA
1 ATAA
275962 GATTGATGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
11 12 0.25
12 10 0.21
14 14 0.29
15 12 0.25
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (14 bp):
ATAAATTATATATC
Found at i:275973 original size:26 final size:26
Alignment explanation
Indices: 275869--275965 Score: 169
Period size: 26 Copynumber: 3.7 Consensus size: 26
275859 ATTGATTTTC
*
275869 AATT-TATAGTCAAAAGATTATAAATA
1 AATTATATA-TCATAAGATTATAAATA
275895 AATTATATATCATAAGATTATAAATA
1 AATTATATATCATAAGATTATAAATA
275921 AATTATATATCATAAGATTATAAATA
1 AATTATATATCATAAGATTATAAATA
275947 AATTATATATCATAAGATT
1 AATTATATATCATAAGATT
275966 GATGATAATA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
26 65 0.94
27 4 0.06
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.38
Consensus pattern (26 bp):
AATTATATATCATAAGATTATAAATA
Found at i:276116 original size:280 final size:280
Alignment explanation
Indices: 275676--276192 Score: 641
Period size: 280 Copynumber: 1.8 Consensus size: 280
275666 TGAATTTCAA
* * * * * *
275676 ATCATAATATTGATGTTAATATATTGTCAAAATGATAATTATTCGTTGATAACCATTTCAAGCTT
1 ATCATAAGATTGATGATAATATATTATAAAAATGATAATTATTCATTAATAACCATTTCAAGCTT
* ** * * *
275741 TCCAAGTCTAGATAAGCTGAGAATGCTCTTTTCTTATCAAAGGATAGCATCCATTACATGTTTTT
66 TCCAAGGCTAGATAAAATGAAAATGCTATTTTCTTATCAAAGGATAACATCCATTACA-GTTTTT
* *
275806 CAATGTAAACATCCAATTATGGTGGGTTTTAA-TCAA-CAACAACAAAGCTTTCGATTGATTTTC
130 CAATGCAAACATCCAATTATGGTAGGTTTTAACT-AAGC-ACAACAAAGCTTTCGATTGATTTTC
*
275869 AATTTATAGTCA-A-AAGATTATAAATAAATTATATATCATAAGATTATAAATAAATTATATATC
193 AATTTATAATCATATAAGATTATAAATAAATTATATATCATAAGATTATAAATAAATTATATATC
275932 ATAAGATTATAAATAAATTATAT
258 ATAAGATTATAAATAAATTATAT
* * *
275955 ATCATAAGATTGATGATAATATGTTATAAAAATTATAATTATTCATTAATAAACCATTTTAAGCT
1 ATCATAAGATTGATGATAATATATTATAAAAATGATAATTATTCATTAAT-AACCATTTCAAGCT
* * * *
276020 TTCGAAGGC-ATGATAAAATTAAAATGCTATTTTCTTGTCAATGGATAACATCCACTTCACA-TT
65 TTCCAAGGCTA-GATAAAATGAAAATGCTATTTTCTTATCAAAGGATAACATCCA-TT-ACAGTT
* * * *
276083 TTTCAATGCAAACATTCAATTATGGTAGGTTTTAACTAAGCACAACAAAGGTTTTGATTTATTTT
127 TTTCAATGCAAACATCCAATTATGGTAGGTTTTAACTAAGCACAACAAAGCTTTCGATTGATTTT
* * * * *
276148 CGATTTGTAATCATTATAGGATTATAAATGAATTATATATTATAA
192 CAATTTATAATCA-TATAAGATTATAAATAAATTATATATCATAA
276193 TGTTGATGAT
Statistics
Matches: 198, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
279 43 0.22
280 122 0.62
281 4 0.02
282 4 0.02
283 25 0.13
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38
Consensus pattern (280 bp):
ATCATAAGATTGATGATAATATATTATAAAAATGATAATTATTCATTAATAACCATTTCAAGCTT
TCCAAGGCTAGATAAAATGAAAATGCTATTTTCTTATCAAAGGATAACATCCATTACAGTTTTTC
AATGCAAACATCCAATTATGGTAGGTTTTAACTAAGCACAACAAAGCTTTCGATTGATTTTCAAT
TTATAATCATATAAGATTATAAATAAATTATATATCATAAGATTATAAATAAATTATATATCATA
AGATTATAAATAAATTATAT
Found at i:276300 original size:231 final size:228
Alignment explanation
Indices: 275929--277071 Score: 1069
Period size: 231 Copynumber: 5.0 Consensus size: 228
275919 TAAATTATAT
* * * *
275929 ATCATAAGATTATAAATAAATTATATATCATAAGATTGATGATAATATGTTATAAAAATTATAAT
1 ATCATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAAC
* * *
275994 TATTCATTAATAAACCATTTTAAGCTTTCGAAGGCATGATAAAA-TTAAAATGCTATTTTCTTGT
66 TATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAAAAACTT-AAATGCTATTTTTTTGT
* * *
276058 CAATGGATAACATCCACTTCACATTTTTCAATGCAAACATTCAATTATGGTAGGTTTTAACTAAG
130 CAATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAACTAAG
* * * * *
276123 CACAACAAAGGTTTTGATTTATTTTCGATTTGTA
195 AACAACAAAGCTTTTAATTGATTTTCAATTTGTA
* *
276157 ATCATTATAGGATTATAAATGAATTATATATTATAATGTTGATGATAATATGTTATCAAAATTAT
1 ATCA-TA-A-GATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTAT
* * * **
276222 AACTATTCACTAATAAACCATTTCAAGCTTTTGAA-GCATGAAAAAACCTTCAATGCGCTTTTTT
63 AACTATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAAAAA-CTTAAATGCTATTTTTT
* * * * * * * * *
276286 TATCAATTGATAACATCCACTTCATGTTCTCCTATGCAAACATCCAATTATAATAGGCTTTAACC
127 TGTCAATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAACT
** * * **
276351 ATTAACAACAAAGCTTTCAATTTATAATC-A-TTG--
192 AAGAACAACAAAGCTTTTAATTGATTTTCAATTTGTA
* * * * * * *
276384 A--A-AAGATCAAAAATGAATT-TCAAATCATAATATTGATGTTAATATGTTGTCTAAATAATAA
1 ATCATAAGATTATAAATGAATTAT-ATATCATAATATTGATGATAATATGTTATCAAAATTATAA
* ** * * *
276445 -TCATTCGTTGTTAAACCATTTCAAGCTTTCCAAGTC-T-AAATAAACTGAGAATGCT-TTTTTC
65 CT-ATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAA-AAACTTA-AATGCTATTTTT-
* ** * * * *
276506 TTATCAAAAGATAGCATCCACTACACGTTTTTCAATGTAAACATCCAATTGTGATAGGTTTTAAC
126 TTGTCAATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAAC
* * *
276571 CAAGAACAATAAAGCTTTTAATTGATTTTCAATTTATA
191 TAAGAACAACAAAGCTTTTAATTGATTTTCAATTTGTA
* ** * ** *
276609 GTCATAAGATTATAAACAAATTATATATTATAATATTGATGATAATACATTAT-AAAAATATAAC
1 ATCATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAAC
* * * * *
276673 TATTCATTAATAAACCATTTCAAACTTTCGAATGTATG-ATAAACTTAAAATGCTATTTTCTTGT
66 TATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAAAAACTT-AAATGCTATTTTTTTGT
* * * * * * * * *
276737 TAATGCATAGCATCCGCTTCGCGTTTCTCAATGCAAACATCCAAGTATGGTAGGCTTTAACTAAG
130 CAATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAACTAAG
* * * *
276802 CACAATAAAGCTGTTCATTGATTTTCAATTTGTTA
195 AACAACAAAGCTTTTAATTGATTTTCAATTTG-TA
* * * *
276837 TCATTATAAGATTATAAATGAATTATATATCACAATATTGATGATAATATGTTATGAAAATAATA
1 --ATCATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATA
* * * * * * *
276902 ATTATTCGTTAATAACCCATTTCTAGCTTTCGAAGGCAT-AATAAACTTAAAGTCCTCTTTTTTT
64 ACTATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAAAAACTTAAA-TGCTATTTTTTT
* * * * *
276966 GTTAATGGATAACATTCACTTCATGTTTTTCAAAGCAAACATCCAAGTATGATAGGTTTTAACTA
128 GTCAATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAACTA
* * * * * *
277031 AGAATAACAAATCTTTCAATTCATTTTCTATTTATA
193 AGAACAACAAAGCTTTTAATTGATTTTCAATTTGTA
277067 ATCAT
1 ATCAT
277072 TTATAAAATT
Statistics
Matches: 727, Mismatches: 158, Indels: 60
0.77 0.17 0.06
Matches are distributed among these distances:
220 12 0.02
221 156 0.21
222 3 0.00
223 3 0.00
225 1 0.00
227 128 0.18
228 54 0.07
229 6 0.01
230 62 0.09
231 300 0.41
232 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (228 bp):
ATCATAAGATTATAAATGAATTATATATCATAATATTGATGATAATATGTTATCAAAATTATAAC
TATTCATTAATAAACCATTTCAAGCTTTCGAAGGCATGAAAAAACTTAAATGCTATTTTTTTGTC
AATGGATAACATCCACTTCACGTTTTTCAATGCAAACATCCAATTATGATAGGTTTTAACTAAGA
ACAACAAAGCTTTTAATTGATTTTCAATTTGTA
Found at i:277090 original size:27 final size:27
Alignment explanation
Indices: 277060--277111 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
277050 TTCATTTTCT
*
277060 ATTTATAATCATTTATAAAATTATATG
1 ATTTATAATCATTGATAAAATTATATG
*
277087 ATTTATAATCATTGATAAAGTTATA
1 ATTTATAATCATTGATAAAATTATA
277112 AATGAATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (27 bp):
ATTTATAATCATTGATAAAATTATATG
Found at i:277343 original size:259 final size:258
Alignment explanation
Indices: 276836--277343 Score: 601
Period size: 259 Copynumber: 2.0 Consensus size: 258
276826 TCAATTTGTT
* * *
276836 ATCATTATAAGATTATAAATGAATTATATATCACAATATTGATGATAATATGTTATGAAAATAAT
1 ATCATTATAAGATTATAAATGAATTACATATCACAATATTGATGATAAAATGTTATCAAAATAAT
* * * * * * * *
276901 AATTATTCGTTAATAACCCATTTCTAGCTTTCGAAGGCATAATAAACTTAAAGTCCTCTTTTTTT
66 AATTATTCGTTAATAAACAATTTCAAGCCTTCAAAGGCATAATAAACTTAAAATCCTATTTTCTT
* * * * * *
276966 GTTAATGGATAACATTCACTTCATGTTTTTCAAAGCAAACATCCAAGTATGATAGGTTTTAACTA
131 GTCAATAGATAACATCCACTTCATGTTTCTCAAAGCAAACATCCAAGTATGATAGGTATTAAATA
* * *** * *
277031 AGAATAACAAATCTTTCAATTCATTTTCTATTTATAATCATTTATAAAATTATATGATTTATA
196 AGAACAACAAAGCTTTCAATTCACAATCTAGTTATAATCATTTAAAAAATTATATGATTTATA
* * *
277094 ATCATTGATAA-AGTTATAAATGAATTACATGTCATAATATTGATGATAAAATGTTATCAAAATT
1 ATCATT-ATAAGA-TTATAAATGAATTACATATCACAATATTGATGATAAAATGTTATCAAAATA
* * * *
277158 ATAATTATTCGTTACTAAACAATTTCAAGCCTTCAAAGGCATGATAGACTTAAAATGCTATTTTC
64 ATAATTATTCGTTAATAAACAATTTCAAGCCTTCAAAGGCATAATAAACTTAAAATCCTATTTTC
* * *
277223 TTGTCAATAGATAGCATCCACTTC-TCGTTTCTCAATGCAAACATCCAATTATGATAGGTATTAA
129 TTGTCAATAGATAACATCCACTTCAT-GTTTCTCAAAGCAAACATCCAAGTATGATAGGTATTAA
* * * *
277287 ATGAGAACAACAAAGCTTTCGATTTACAATC-AGTTATAA-GATTATAAAAGAATTATA
193 ATAAGAACAACAAAGCTTTCAATTCACAATCTAGTTATAATCATT-TAAAA-AATTATA
277344 CATCATAATA
Statistics
Matches: 207, Mismatches: 38, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
257 3 0.01
258 19 0.09
259 185 0.89
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (258 bp):
ATCATTATAAGATTATAAATGAATTACATATCACAATATTGATGATAAAATGTTATCAAAATAAT
AATTATTCGTTAATAAACAATTTCAAGCCTTCAAAGGCATAATAAACTTAAAATCCTATTTTCTT
GTCAATAGATAACATCCACTTCATGTTTCTCAAAGCAAACATCCAAGTATGATAGGTATTAAATA
AGAACAACAAAGCTTTCAATTCACAATCTAGTTATAATCATTTAAAAAATTATATGATTTATA
Found at i:277561 original size:207 final size:207
Alignment explanation
Indices: 277173--277574 Score: 506
Period size: 207 Copynumber: 1.9 Consensus size: 207
277163 TATTCGTTAC
* * *
277173 TAAACAATTTCAAGCCTTCAAAGGCATGATAGACTTAAAATGCTATTTTCTTGTCAATAGATAGC
1 TAAACAATTTCAAGCCTTCAAAAGCATGATAAACTTAAAATGCTACTTTCTTGTCAATAGATAGC
* **
277238 ATCCACTTCTCGTTTCTCAATGCAAACATCCAATTATGATAGGTATTAAATGAGAACAACAAAGC
66 ATCCACTTCTCGTTTCCCAATGCAAACATCCAATTATGATAGGTATTAAACAAGAACAACAAAGC
* * * * * *
277303 TTTCGATTTACAATCAGTTATAAGATTATAAAAGAATTATACATCATAATATTGATGATAATATG
131 TTTCAACTTACAATCAGTTATAAGATTATAAAAGAATTACAAATAATAATATTGACGATAATATG
277368 CTTTCAAAATTT
196 CTTTCAAAATTT
* * * * *
277380 TAAACCATTTCCAGCTTTCAAAAGCATGATAAACTTAAAATGCT-CTTTCTTGTTAATGGATAGC
1 TAAACAATTTCAAGCCTTCAAAAGCATGATAAACTTAAAATGCTACTTTCTTGTCAATAGATAGC
* * * * *
277444 ATCCACTTCAT-GTTTCCCAATGCAAAACATCTAATTA-GGTCAGGTTTTAACCAATAACAACAA
66 ATCCACTTC-TCGTTTCCCAATGC-AAACATCCAATTATGAT-AGGTATTAAACAAGAACAACAA
* * * *
277507 AGCTTTCAACTTATAATCATTTGTAAGATTA-AAAATGAATTACAAATAATAATATTGACGCTAA
128 AGCTTTCAACTTACAATCAGTTATAAGATTATAAAA-GAATTACAAATAATAATATTGACGATAA
277571 TATG
192 TATG
277575 TTATAAAAGA
Statistics
Matches: 165, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
206 43 0.26
207 122 0.74
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (207 bp):
TAAACAATTTCAAGCCTTCAAAAGCATGATAAACTTAAAATGCTACTTTCTTGTCAATAGATAGC
ATCCACTTCTCGTTTCCCAATGCAAACATCCAATTATGATAGGTATTAAACAAGAACAACAAAGC
TTTCAACTTACAATCAGTTATAAGATTATAAAAGAATTACAAATAATAATATTGACGATAATATG
CTTTCAAAATTT
Found at i:277925 original size:231 final size:230
Alignment explanation
Indices: 277517--278112 Score: 594
Period size: 231 Copynumber: 2.6 Consensus size: 230
277507 AGCTTTCAAC
* * * * * *
277517 TTATAATCATTTGTAAGATTAAAAATGAATTACAAATAATAATATTGACGCTAATATGTTAT-AA
1 TTATAATCATTTATAAGATTATAAATGAATTATATATAATAATATTGATGATAATATGTTATCAA
** * * * * *
277581 AAGAGATAATTATTCATTGATAAATCATTTCAAGGTTTACAAGGCACT-ATAAACTTAGAGTGCT
66 AA-TTATAATTATTCATTAATAAACCATTTCAAGCTTTA-AAGGCA-TGATAAACTTAAAATGCT
* * * * *** *
277645 CTATTCTTGTCAAAGGATAGCATCCACTACACATTTCTCGATGAAAACATCCTTTTATGGTA-GG
128 ATTTTCTTGTCAAAGAATAGCATCCACTACACATTTCTCAATGAAAACATCAAATTATGATATGG
* *
277709 CTTGATCAAGAA-CAATAAATCTTTCAACTAATTTTTGAT
193 CTTAATCAAGAACCAA-AAA-CTTTCAACTAATTTCTGAT
* * *
277748 TTATAATCA-TTATAAGATTATAAATGAATTATATATTATAATATTGATGATATTATGTTTTCAA
1 TTATAATCATTTATAAGATTATAAATGAATTATATATAATAATATTGATGATAATATGTTATCAA
* *
277812 AATTATAATTATTCATTAATAAACCATTTTGAAGCTTTCAAAGGCATGATAACCTTAAAATGCTA
66 AATTATAATTATTCATTAATAAACCA-TTTCAAGCTTT-AAAGGCATGATAAACTTAAAATGCTA
* *** *
277877 TTTTCTTGTCAATA-AATAGCATCCA-TTCTTTGTTTCTCAATGAAAACATCAAATTATGATATT
129 TTTTCTTGTCAA-AGAATAGCATCCACTAC-ACATTTCTCAATGAAAACATCAAATTATGATATG
** ** * *
277940 TTTTAATCAAGAACCAAAAACTTTTGATTTATTTCTGAT
192 GCTTAATCAAGAACCAAAAACTTTCAACTAATTTCTGAT
** * * *
277979 TTATAATCATTTATAAGATTATAAATGAATTATATATCCTAATAATGATCAGAATATGTTATCAA
1 TTATAATCATTTATAAGATTATAAATGAATTATATATAATAATATTGATGATAATATGTTATCAA
* * * * * *
278044 AATTATAATTACTCATTAGTAAACCATTTCAAGATTTTTGAAGGCATGATAATCTTAAAATGCTT
66 AATTATAATTATTCATTAATAAACCATTTCAAG--CTTTAAAGGCATGATAAACTTAAAATGCTA
278109 TTTT
129 TTTT
278113 GATGTGAATG
Statistics
Matches: 301, Mismatches: 53, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
230 66 0.22
231 115 0.38
232 114 0.38
233 6 0.02
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (230 bp):
TTATAATCATTTATAAGATTATAAATGAATTATATATAATAATATTGATGATAATATGTTATCAA
AATTATAATTATTCATTAATAAACCATTTCAAGCTTTAAAGGCATGATAAACTTAAAATGCTATT
TTCTTGTCAAAGAATAGCATCCACTACACATTTCTCAATGAAAACATCAAATTATGATATGGCTT
AATCAAGAACCAAAAACTTTCAACTAATTTCTGAT
Found at i:278158 original size:232 final size:231
Alignment explanation
Indices: 277739--278169 Score: 560
Period size: 232 Copynumber: 1.9 Consensus size: 231
277729 CTTTCAACTA
* * * * * *
277739 ATTTTTGATTTATAATCATTATAAGATTATAAATGAATTATATATTATAATATTGATGATATTAT
1 ATTTCTGATTTATAATCATTATAAGATTATAAATGAATTATATATCATAATAATGATCAGAATAT
* * *
277804 GTTTTCAAAATTATAATTATTCATTAATAAACCATTTTGAAGCTTTCAAAGGCATGATAACCTTA
66 GTTATCAAAATTATAATTACTCATTAATAAACCATTTTCAAGCTTTCAAAGGCATGATAACCTTA
* * * * *
277869 AAATGCTATTTTCTTGTCAATAAATAGCATCCATTCTTTGTTTCTCAATGAAAACATCAAATTAT
131 AAATGCTATTTTCATGTCAATAAATAACATACATTCTATGTTGCTCAATGAAAACATCAAATTAT
277934 GATATTTTTTAATCAAGAACCAAAAACTTTTGATTT
196 GATATTTTTTAATCAAGAACCAAAAACTTTTGATTT
*
277970 ATTTCTGATTTATAATCATTTATAAGATTATAAATGAATTATATATCCTAATAATGATCAGAATA
1 ATTTCTGATTTATAATCA-TTATAAGATTATAAATGAATTATATATCATAATAATGATCAGAATA
* * ** *
278035 TGTTATCAAAATTATAATTACTCATTAGTAAACCA-TTTCAAGATTTTTGAAGGCATGATAATCT
65 TGTTATCAAAATTATAATTACTCATTAATAAACCATTTTCAAG-CTTTCAAAGGCATGATAACCT
* * * ** * * *
278099 TAAAATGCTTTTTTGATGTGAATGGATAACATACATT-TCATGTTGCTTAATGCAAACATCCAAT
129 TAAAATGCTATTTTCATGTCAATAAATAACATACATTCT-ATGTTGCTCAATGAAAACATCAAAT
*
278163 TTTGATA
193 TATGATA
278170 GGTTTTAACC
Statistics
Matches: 168, Mismatches: 29, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
231 24 0.14
232 144 0.86
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (231 bp):
ATTTCTGATTTATAATCATTATAAGATTATAAATGAATTATATATCATAATAATGATCAGAATAT
GTTATCAAAATTATAATTACTCATTAATAAACCATTTTCAAGCTTTCAAAGGCATGATAACCTTA
AAATGCTATTTTCATGTCAATAAATAACATACATTCTATGTTGCTCAATGAAAACATCAAATTAT
GATATTTTTTAATCAAGAACCAAAAACTTTTGATTT
Found at i:283312 original size:29 final size:29
Alignment explanation
Indices: 283270--283327 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
283260 GCGAATCTTG
283270 GAGTTTCAGTTGAGTATGCCTTGGAATAC
1 GAGTTTCAGTTGAGTATGCCTTGGAATAC
283299 GAGTTTCAGTTGAGTATGCCTTGGAATAC
1 GAGTTTCAGTTGAGTATGCCTTGGAATAC
283328 AACCAACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (29 bp):
GAGTTTCAGTTGAGTATGCCTTGGAATAC
Found at i:287322 original size:19 final size:18
Alignment explanation
Indices: 287293--287343 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 18
287283 AGAATTTTAG
287293 AATAAATAATATTTTATT
1 AATAAATAATATTTTATT
287311 AATAACATAATATTTTATT
1 AATAA-ATAATATTTTATT
*
287330 CATAAAATAATATT
1 AAT-AAATAATATT
287344 AAAATATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 23 0.77
20 2 0.07
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
AATAAATAATATTTTATT
Found at i:289648 original size:25 final size:25
Alignment explanation
Indices: 289615--289673 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
289605 AATCTGTGAT
*
289615 TATACGTGGCAAGGCCATGAGTTGA
1 TATACGTGGCAAGGCCATAAGTTGA
* *
289640 TATATGTGGCTAGGCCATAAGTTGA
1 TATACGTGGCAAGGCCATAAGTTGA
289665 TATACGTGG
1 TATACGTGG
289674 TTGCAACCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (25 bp):
TATACGTGGCAAGGCCATAAGTTGA
Found at i:296265 original size:22 final size:22
Alignment explanation
Indices: 296237--296288 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
296227 ATCACATTGT
**
296237 TTAATTAAGTCATTGGGTTTAA
1 TTAATTAAGTCATTGGGCCTAA
*
296259 TTAATTAAGTTATTGGGCCTAA
1 TTAATTAAGTCATTGGGCCTAA
296281 TTAATTAA
1 TTAATTAA
296289 ATTTTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (22 bp):
TTAATTAAGTCATTGGGCCTAA
Found at i:296314 original size:36 final size:36
Alignment explanation
Indices: 296259--296338 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
296249 TTGGGTTTAA
* * * *
296259 TTAATTAAGTTATTGGGCCTAATTAATTAAATTTTT
1 TTAATTAAGTCATTAGGCCTAATTAATTAAAATTGT
*
296295 TTAATTAAGTCATTAGGCCTAATTGATTAAAATTGT
1 TTAATTAAGTCATTAGGCCTAATTAATTAAAATTGT
296331 TTAATTAA
1 TTAATTAA
296339 TTTATTGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.46
Consensus pattern (36 bp):
TTAATTAAGTCATTAGGCCTAATTAATTAAAATTGT
Found at i:300442 original size:11 final size:11
Alignment explanation
Indices: 300426--300450 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
300416 TTCATAAATG
300426 ATAAAATAATA
1 ATAAAATAATA
300437 ATAAAATAATA
1 ATAAAATAATA
300448 ATA
1 ATA
300451 TTTTTCTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:300590 original size:16 final size:16
Alignment explanation
Indices: 300539--300590 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 16
300529 AAGAGACAAG
300539 TAAAA-AATTTTAAAA
1 TAAAATAATTTTAAAA
*
300554 TAAAATAATATTTTATTAA
1 TAAAAT-A-ATTTTA-AAA
300573 TAAAATAATTTTAAAA
1 TAAAATAATTTTAAAA
300589 TA
1 TA
300591 TTAATATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 5 0.16
16 4 0.13
17 7 0.23
18 7 0.23
19 8 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAAATAATTTTAAAA
Found at i:305544 original size:26 final size:26
Alignment explanation
Indices: 305515--305572 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
305505 CAAAGTAGCT
* * *
305515 TGTAACAAAATTTTTTGAGCATGGTA
1 TGTAACAAAATTTTTTAAACATGGCA
*
305541 TGTAACAATATTTTTTAAACATGGCA
1 TGTAACAAAATTTTTTAAACATGGCA
305567 TGTAAC
1 TGTAAC
305573 TTGCTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (26 bp):
TGTAACAAAATTTTTTAAACATGGCA
Found at i:305661 original size:26 final size:27
Alignment explanation
Indices: 305626--305693 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
305616 AAACAACATT
* * **
305626 TTTTTCAACATGACGAGTAATAATTA-
1 TTTTTAAACATGACGAGCAATAACAAC
*
305652 TTTTTAAACATGACGTGCAATAACAAC
1 TTTTTAAACATGACGAGCAATAACAAC
305679 TTTTTTAAACATGAC
1 -TTTTTAAACATGAC
305694 ATATAATTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 21 0.60
28 14 0.40
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (27 bp):
TTTTTAAACATGACGAGCAATAACAAC
Found at i:315478 original size:14 final size:15
Alignment explanation
Indices: 315461--315502 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
315451 TTTAAAATAA
*
315461 AATAATATT-TTATT
1 AATAATATTAATATT
315475 AATAA-ATTAATATT
1 AATAATATTAATATT
315489 AA-AATATTAATATT
1 AATAATATTAATATT
315503 TTAACTGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATAATATTAATATT
Found at i:316674 original size:15 final size:15
Alignment explanation
Indices: 316644--316697 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
316634 AATTGGCTTG
*
316644 GAAACAAAGCGAGAAA
1 GAAAGAAAG-GAGAAA
* *
316660 GGAAGAAATGAGAAA
1 GAAAGAAAGGAGAAA
316675 GAAAGAAAGGAGAAA
1 GAAAGAAAGGAGAAA
*
316690 GAAGGAAA
1 GAAAGAAA
316698 AAAGACAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 26 0.81
16 6 0.19
ACGTcount: A:0.63, C:0.04, G:0.31, T:0.02
Consensus pattern (15 bp):
GAAAGAAAGGAGAAA
Found at i:326821 original size:4 final size:4
Alignment explanation
Indices: 326793--326858 Score: 69
Period size: 4 Copynumber: 15.8 Consensus size: 4
326783 TGTGATTAAT
* * *
326793 ATTA ATTG ATTA ATTA TTTTAA ATTA ATTA ATTA ACTA ATTA ATTAA ATTA
1 ATTA ATTA ATTA ATTA -ATT-A ATTA ATTA ATTA ATTA ATTA ATT-A ATTA
*
326844 ACTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATT
326859 TATAAAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
4 42 0.82
5 8 0.16
6 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:326844 original size:17 final size:17
Alignment explanation
Indices: 326814--326890 Score: 86
Period size: 17 Copynumber: 4.5 Consensus size: 17
326804 AATTATTTTA
326814 AATTAATT-AATTAACT
1 AATTAATTAAATTAACT
326830 AATTAATTAAATTAACT
1 AATTAATTAAATTAACT
* *
326847 AATTAATTAATTTATA-A
1 AATTAATTAAATTA-ACT
*
326864 AAATAATTTAAATTAACT
1 AATTAA-TTAAATTAACT
326882 AATTCAATT
1 AATT-AATT
326891 CTTTAAAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
16 8 0.16
17 27 0.54
18 13 0.26
19 2 0.04
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTAATTAAATTAACT
Found at i:338915 original size:10 final size:10
Alignment explanation
Indices: 338864--338920 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
338854 GTGTGCATAG
* *
338864 ATATGTACAC
1 ATATATACAT
*
338874 ATACATACAT
1 ATATATACAT
*
338884 ATACATACAT
1 ATATATACAT
* **
338894 ATGTATGTAT
1 ATATATACAT
338904 ATATATACAT
1 ATATATACAT
338914 ATATATA
1 ATATATA
338921 TGTAACTAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (10 bp):
ATATATACAT
Found at i:342067 original size:29 final size:28
Alignment explanation
Indices: 342026--342082 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
342016 TAATCTTATC
*
342026 TATTTTATGTTAAATTTTATGTAATTTT
1 TATTTTATGTTAAATTCTATGTAATTTT
342054 TATTTCTATGTTAAATTCTATGTAATTTT
1 TATTT-TATGTTAAATTCTATGTAATTTT
342083 GATCTCTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (28 bp):
TATTTTATGTTAAATTCTATGTAATTTT
Found at i:344405 original size:22 final size:22
Alignment explanation
Indices: 344380--344449 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
344370 ATGCCTTGAA
*
344380 GAGAAAAGATTGACTCTGTGTT
1 GAGAAAAGATTGACTCTATGTT
* * * *
344402 GAGAAAA-A-TCAATCTTTTGTA
1 GAGAAAAGATTGACTC-TATGTT
*
344423 GAGAAAAGATTGACTCTATCTT
1 GAGAAAAGATTGACTCTATGTT
344445 GAGAA
1 GAGAA
344450 GAATCAATTT
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
20 4 0.11
21 12 0.33
22 16 0.44
23 4 0.11
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (22 bp):
GAGAAAAGATTGACTCTATGTT
Found at i:344447 original size:43 final size:43
Alignment explanation
Indices: 344379--344462 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
344369 GATGCCTTGA
* *
344379 AGAGAAAAGATTGACTCTGTGTTGAGAAAAATCAATCTTTTGT
1 AGAGAAAAGATTGACTCTATCTTGAGAAAAATCAATCTTTTGT
* *
344422 AGAGAAAAGATTGACTCTATCTTGAGAAGAATCAATTTTTT
1 AGAGAAAAGATTGACTCTATCTTGAGAAAAATCAATCTTTT
344463 TGAAGGGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (43 bp):
AGAGAAAAGATTGACTCTATCTTGAGAAAAATCAATCTTTTGT
Found at i:344669 original size:30 final size:33
Alignment explanation
Indices: 344601--344672 Score: 87
Period size: 35 Copynumber: 2.2 Consensus size: 33
344591 CTGCAAGAAC
* *
344601 TTGAAAATAAAGAAAAGTTTAGGAGAAAGACTAAA
1 TTGAAAAGAAAGAAAAGTTTAGGAG--AGACCAAA
344636 TTGAAAAGAAAGAAAAG-TTA-GAG-GACCAAA
1 TTGAAAAGAAAGAAAAGTTTAGGAGAGACCAAA
344666 TTGAAAA
1 TTGAAAA
344673 ATTAATTTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 13 0.37
33 3 0.09
34 3 0.09
35 16 0.46
ACGTcount: A:0.57, C:0.04, G:0.21, T:0.18
Consensus pattern (33 bp):
TTGAAAAGAAAGAAAAGTTTAGGAGAGACCAAA
Found at i:348774 original size:31 final size:31
Alignment explanation
Indices: 348736--348797 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
348726 TGAATTTAGA
348736 AAACTAACTTTCCTCAAATTCATCATGCTTT
1 AAACTAACTTTCCTCAAATTCATCATGCTTT
348767 AAACTAACTTTCCTCAAATTCATCATGCTTT
1 AAACTAACTTTCCTCAAATTCATCATGCTTT
348798 GACCAAAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (31 bp):
AAACTAACTTTCCTCAAATTCATCATGCTTT
Found at i:368641 original size:350 final size:350
Alignment explanation
Indices: 367819--368865 Score: 2001
Period size: 350 Copynumber: 3.0 Consensus size: 350
367809 ATTTGCATAT
367819 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCCATCAGAGTTGTTTCTAATAGCT
1 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGG-CATCAGAGTTGTTTCTAATAGCT
367884 AGAAACTATCTTT-ATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAA
65 AGAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAA
*
367948 AGGGTTAGA-AACCTACTAAAATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTT
130 AGGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTT
368012 TTTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTG
195 TTTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTG
368077 ATTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTG-TGAAAACACTATAAACC
260 ATTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACC
368141 TTATTGTAGGGGATTAGAGCTTGAGC
325 TTATTGTAGGGGATTAGAGCTTGAGC
368167 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCATCAGAGTTGTTTCTAATAGCTA
1 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCATCAGAGTTGTTTCTAATAGCTA
368232 GAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAAA
66 GAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAAA
*
368297 GGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTTTCACATTGTTT
131 GGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTTT
368362 TTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTGA
196 TTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTGA
368427 TTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACCT
261 TTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACCT
368492 TATTGTAGGGGATTAGAGCTTGAGC
326 TATTGTAGGGGATTAGAGCTTGAGC
*
368517 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCATCAGAGTTGTTCCTAATAGCTA
1 TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCATCAGAGTTGTTTCTAATAGCTA
*
368582 GAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAAGTAGCTCTAACGATCAAAAAA
66 GAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAAA
368647 GGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTTT
131 GGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTTT
* *
368712 TTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTGCTTTCTAGATCAGTAAGAGTGA
196 TTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTGA
368777 TTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACCT
261 TTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACCT
*
368842 TATTGTAGGGGATTGGAGCTTGAG
326 TATTGTAGGGGATTAGAGCTTGAG
368866 TTAGAAGCTC
Statistics
Matches: 688, Mismatches: 8, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
347 36 0.05
348 101 0.15
349 165 0.24
350 386 0.56
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (350 bp):
TTGAATTTAAATGCTAGAGGATAAAATAATGGCTAGAATGGCATCAGAGTTGTTTCTAATAGCTA
GAAACTATCTTTAATAGCAAAATCTAACTTCTTAAGTATAAAAGGTAGCTCTAACGATCAAAAAA
GGGTTAGAGAACCTACTAAGATCACATTTTGAGGAAAGCCCAAAGAACCCACTCTCACATTGTTT
TTTCATTCCTATTCTTGTAAAAGTGTTTGAGCTTGATTATTTTCTTTGTAGATCAGTAAGAGTGA
TTAGTATACTTGTTTTTTTCTTTTCATTTCTTGGTAAATTAGAGTGTTGAAAACACTATAAACCT
TATTGTAGGGGATTAGAGCTTGAGC
Found at i:369900 original size:18 final size:19
Alignment explanation
Indices: 369872--369923 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
369862 AACTTGAAAT
369872 GAAAGAAGAAAAAAG-AGGA
1 GAAA-AAGAAAAAAGCAGGA
369891 GAAAAAGAAAAAAGCCAAGGA
1 GAAAAAGAAAAAAG-C-AGGA
*
369912 CAAAAAGAAAAA
1 GAAAAAGAAAAA
369924 TCTTACACAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.34
19 4 0.14
21 15 0.52
ACGTcount: A:0.71, C:0.06, G:0.23, T:0.00
Consensus pattern (19 bp):
GAAAAAGAAAAAAGCAGGA
Found at i:385731 original size:21 final size:21
Alignment explanation
Indices: 385707--385749 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
385697 AAGCGATTAA
385707 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAG-TATTTTATGTTAAAT
*
385728 TTTAAGTATTTTATTTTAAAT
1 TTTAAGTATTTTATGTTAAAT
385749 T
1 T
385750 ACTTTAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTAAGTATTTTATGTTAAAT
Found at i:393572 original size:63 final size:63
Alignment explanation
Indices: 393473--393609 Score: 265
Period size: 63 Copynumber: 2.2 Consensus size: 63
393463 GTTTCAAAGA
393473 ATTAAAATAGGAATGAAACTAAGTTCCCATCATTTGATGGGTAAATTAAAAGAAATTGGCACT
1 ATTAAAATAGGAATGAAACTAAGTTCCCATCATTTGATGGGTAAATTAAAAGAAATTGGCACT
393536 ATTAAAATAGGAATGAAACTAAGTTCCCATCATTTGATGGGTAAATTAAAAGAAATTGGCACT
1 ATTAAAATAGGAATGAAACTAAGTTCCCATCATTTGATGGGTAAATTAAAAGAAATTGGCACT
393599 ATTAAATATAG
1 ATTAAA-ATAG
393610 TTCAAATGCA
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
63 69 0.95
64 4 0.05
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (63 bp):
ATTAAAATAGGAATGAAACTAAGTTCCCATCATTTGATGGGTAAATTAAAAGAAATTGGCACT
Found at i:406617 original size:29 final size:29
Alignment explanation
Indices: 406575--406634 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
406565 ACAAAGTCCT
406575 TCAGTGATAAGCCTCTCAGTGCAATACGG
1 TCAGTGATAAGCCTCTCAGTGCAATACGG
*
406604 TCAGTGATAAGCCTCTCATTGCAATACGG
1 TCAGTGATAAGCCTCTCAGTGCAATACGG
406633 TC
1 TC
406635 CTTTCATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (29 bp):
TCAGTGATAAGCCTCTCAGTGCAATACGG
Found at i:413470 original size:14 final size:13
Alignment explanation
Indices: 413439--413473 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
413429 CCTTTAACTC
413439 ATTTTTCTTCCGA
1 ATTTTTCTTCCGA
413452 ATTTTTCTTCCGA
1 ATTTTTCTTCCGA
413465 ATTTTTCTT
1 ATTTTTCTT
413474 TTCTTCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.20, G:0.06, T:0.60
Consensus pattern (13 bp):
ATTTTTCTTCCGA
Found at i:417977 original size:26 final size:26
Alignment explanation
Indices: 417941--417993 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
417931 TCTATGACTT
417941 GTGCTACTGTCACAAACCATAAACAA
1 GTGCTACTGTCACAAACCATAAACAA
417967 GTGCTACTGTCACAAACCATAAACAA
1 GTGCTACTGTCACAAACCATAAACAA
417993 G
1 G
417994 ACTCTACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (26 bp):
GTGCTACTGTCACAAACCATAAACAA
Found at i:420405 original size:19 final size:20
Alignment explanation
Indices: 420378--420416 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
420368 TTAATATTTT
420378 AATAATATTTTA-TTCAAAA
1 AATAATATTTTATTTCAAAA
*
420397 AATACTATTTTATTTCAAAA
1 AATAATATTTTATTTCAAAA
420417 TATTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (20 bp):
AATAATATTTTATTTCAAAA
Found at i:421720 original size:60 final size:60
Alignment explanation
Indices: 421640--421814 Score: 181
Period size: 60 Copynumber: 2.9 Consensus size: 60
421630 AGACATCATC
* * *** * **
421640 ACCTACTCATGGGAATTACCCACGTTACCAAATACT-AATCGAGGCTTCAGGTCCCTTTTT
1 ACCTACTCGTGGGAACTACCCACACCACCAAATA-TGAATCGAGGCTTCAAGTCCCCCTTT
* * *
421700 ATCTACTTGTGGGAACTACCCACACCACCTAATATGAATCGAGGCTTCAAGTCCCCCTTT
1 ACCTACTCGTGGGAACTACCCACACCACCAAATATGAATCGAGGCTTCAAGTCCCCCTTT
* ** * * *
421760 ACCTACTCGTGGGAACTACCTATGCCACCCAATATGGATCAAGGCTTCAAGTCCC
1 ACCTACTCGTGGGAACTACCCACACCACCAAATATGAATCGAGGCTTCAAGTCCC
421815 ATTTTACAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 1 0.01
60 94 0.99
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (60 bp):
ACCTACTCGTGGGAACTACCCACACCACCAAATATGAATCGAGGCTTCAAGTCCCCCTTT
Found at i:424967 original size:21 final size:22
Alignment explanation
Indices: 424934--424981 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
424924 CTCTTAAAGT
*
424934 AATTATAAATAAAGTAACTTAA
1 AATTATAAATAAAATAACTTAA
*
424956 AATT-TAACTAAAATAACTT-A
1 AATTATAAATAAAATAACTTAA
424976 AATTAT
1 AATTAT
424982 CACTTAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 14 0.61
22 4 0.17
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (22 bp):
AATTATAAATAAAATAACTTAA
Found at i:444241 original size:15 final size:15
Alignment explanation
Indices: 444221--444252 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
444211 AAAATTATGA
*
444221 TTCAAACTCATCTCT
1 TTCAAACTCACCTCT
444236 TTCAAACTCACCTCT
1 TTCAAACTCACCTCT
444251 TT
1 TT
444253 GATCACTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (15 bp):
TTCAAACTCACCTCT
Found at i:447650 original size:20 final size:21
Alignment explanation
Indices: 447625--447671 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
447615 AAAGCCCAAC
*
447625 GCTTTAATCGATTAAAG-GTA
1 GCTTTAATAGATTAAAGTGTA
447645 GCTTTAATAGATTAAAGTGTA
1 GCTTTAATAGATTAAAGTGTA
447666 G-TTTAA
1 GCTTTAA
447672 AAATTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.38
Consensus pattern (21 bp):
GCTTTAATAGATTAAAGTGTA
Found at i:448764 original size:65 final size:65
Alignment explanation
Indices: 448688--448819 Score: 237
Period size: 65 Copynumber: 2.0 Consensus size: 65
448678 TTCTATCAAG
*
448688 CTTTGTAGAAGAGCTCATAGGTGTTCTACTTAACTTCACATTCATCATACCAAACTTTTTAGCAT
1 CTTTGTAGAAGAGCTCATAGGTGTTCTAATTAACTTCACATTCATCATACCAAACTTTTTAGCAT
* *
448753 CTTTGTAGAAGAGCTCATAGGTGTTTTAATTAACTTCACATTCATCATACCAAACTTTTTAGGAT
1 CTTTGTAGAAGAGCTCATAGGTGTTCTAATTAACTTCACATTCATCATACCAAACTTTTTAGCAT
448818 CT
1 CT
448820 CCTTAGTGTA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (65 bp):
CTTTGTAGAAGAGCTCATAGGTGTTCTAATTAACTTCACATTCATCATACCAAACTTTTTAGCAT
Found at i:452903 original size:21 final size:21
Alignment explanation
Indices: 452879--452918 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
452869 GTACATATGT
452879 TGTTTTAATTAAGACAAGAGC
1 TGTTTTAATTAAGACAAGAGC
*
452900 TGTTTTAATTTAGACAAGA
1 TGTTTTAATTAAGACAAGA
452919 ATATTTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTTTTAATTAAGACAAGAGC
Found at i:461251 original size:16 final size:14
Alignment explanation
Indices: 461230--461264 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
461220 GTATTTTGGA
461230 AATATAATAATCAAAT
1 AATATAATAAT--AAT
461246 AATATAATAATAAT
1 AATATAATAATAAT
461260 AATAT
1 AATAT
461265 TATTCGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
16 11 0.58
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
AATATAATAATAAT
Found at i:470830 original size:40 final size:40
Alignment explanation
Indices: 470737--470830 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
470727 AAGACCACAA
* * *
470737 CAAAAGGAATGCAGGTAAGGCTTGTAAATATACATGGCAG
1 CAAAAGTAATGCATGTAAGGCTTGCAAATATACATGGCAG
* *
470777 CAAAAGTAATGCATGTAAGGCTTGCAGATATACATGGTAG
1 CAAAAGTAATGCATGTAAGGCTTGCAAATATACATGGCAG
470817 CAAAAGTAATGCAT
1 CAAAAGTAATGCAT
470831 ATAATACTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.22
Consensus pattern (40 bp):
CAAAAGTAATGCATGTAAGGCTTGCAAATATACATGGCAG
Found at i:482295 original size:66 final size:66
Alignment explanation
Indices: 482218--482346 Score: 204
Period size: 66 Copynumber: 2.0 Consensus size: 66
482208 TTGAGGGCGA
482218 CATTGTTATGGACAATTAATGATTTCACTACTTATGGAATGTTGTCGAGATGGAGCACTCATGCG
1 CATTGTTATGGACAATTAATGATTTCACTACTTATGGAATGTTGTCGAGATGGAGCACTCATGCG
482283 G
66 G
* * * * * *
482284 CATTGTTATGGATAATTAATGATTTCCCTGCTTATGGTATGTTGTTGGGATGGAGCACTCATG
1 CATTGTTATGGACAATTAATGATTTCACTACTTATGGAATGTTGTCGAGATGGAGCACTCATG
482347 GATGATTATC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (66 bp):
CATTGTTATGGACAATTAATGATTTCACTACTTATGGAATGTTGTCGAGATGGAGCACTCATGCG
G
Found at i:484718 original size:110 final size:110
Alignment explanation
Indices: 484585--484789 Score: 329
Period size: 110 Copynumber: 1.9 Consensus size: 110
484575 GAATGGCATG
* * * * *
484585 TTTTGTTAACATTTTTTATTGTAAACATGTATGAGAATTAGTCTTGATTCTTGCATTTTGATGAT
1 TTTTGCTAACATTTTGTATTGTAAACATGAATGAGAATTAGTCTTAATTCTTACATTTTGATGAT
484650 GATTTTGATAGTTTGCTTCAATTTCTTTTAGCATGGCTTCCATAT
66 GATTTTGATAGTTTGCTTCAATTTCTTTTAGCATGGCTTCCATAT
* * *
484695 TTTTGCTAACATTTTGTATTGTAAACATGAATGGGAATTAGTCTTAATTTTTATATTTTGATGAT
1 TTTTGCTAACATTTTGTATTGTAAACATGAATGAGAATTAGTCTTAATTCTTACATTTTGATGAT
*
484760 GATTTTGATAGTTTGTTTCAATTTCTTTTA
66 GATTTTGATAGTTTGCTTCAATTTCTTTTA
484790 ACATATGTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
110 86 1.00
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.51
Consensus pattern (110 bp):
TTTTGCTAACATTTTGTATTGTAAACATGAATGAGAATTAGTCTTAATTCTTACATTTTGATGAT
GATTTTGATAGTTTGCTTCAATTTCTTTTAGCATGGCTTCCATAT
Found at i:486532 original size:74 final size:73
Alignment explanation
Indices: 486375--486564 Score: 183
Period size: 73 Copynumber: 2.6 Consensus size: 73
486365 TCAGAGATAA
* *
486375 AGAAGACTTAGTCGACTAAAAAGCATGGTTTGTCGACTAAGAGCTCACTTCAAGAACTTCAATTA
1 AGAAGACTTAATCGACTAAAAAGCATGGTTTGTCAACTAAGAGCTCACTTCAAGAACTTCAATTA
*
486440 CAAGATAG
66 CAAGACAG
* * * * * *
486448 AG-CGAACTTAATTGACTAAGAAGCGT-GTTTAGTCAATTAAGAGCTCA-TTGCCAAAGAA-TTT
1 AGAAG-ACTTAATCGACTAAAAAGCATGGTTT-GTCAACTAAGAGCTCACTT--C-AAGAACTTC
486509 AATTACAAGACAG
61 AATTACAAGACAG
* ** *
486522 AGAAGACTTAATCAACTAAAAAATAT-GTTAGTCAACTAAGAGC
1 AGAAGACTTAATCGACTAAAAAGCATGGTTTGTCAACTAAGAGC
486565 ACTCTATTTG
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
72 7 0.08
73 45 0.48
74 35 0.38
75 6 0.06
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (73 bp):
AGAAGACTTAATCGACTAAAAAGCATGGTTTGTCAACTAAGAGCTCACTTCAAGAACTTCAATTA
CAAGACAG
Found at i:494219 original size:73 final size:74
Alignment explanation
Indices: 494088--494281 Score: 250
Period size: 73 Copynumber: 2.6 Consensus size: 74
494078 GTCGATTGAG
* * * *
494088 AGATAGAGAAGACTTAGTCGACTAAGAAGCATGGTTAGTCAACTAAGAGCTCACTGCCAGAGACT
1 AGATAGAGAAGACTTAATCAACTAAGAAGCATGGTTAGTCAACTAAAAGCTCACTGCCAGAGAAT
494153 TCAATTACA
66 TCAATTACA
* * **
494162 AGATAGAGATA-ACTTAATCAACTAA-AAACATGGTTAGTCAATTAAAAGCTTGCTGCCAGAGAA
1 AGATAGAGA-AGACTTAATCAACTAAGAAGCATGGTTAGTCAACTAAAAGCTCACTGCCAGAGAA
*
494225 TTCAATTATA
65 TTCAATTACA
* * *
494235 AGACAGAGAAGACTTAATCTACTAAGAAGTAT-GTTAGTCAACTAAAA
1 AGATAGAGAAGACTTAATCAACTAAGAAGCATGGTTAGTCAACTAAAA
494282 TCACTCTATC
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
72 1 0.01
73 76 0.74
74 25 0.24
75 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (74 bp):
AGATAGAGAAGACTTAATCAACTAAGAAGCATGGTTAGTCAACTAAAAGCTCACTGCCAGAGAAT
TCAATTACA
Found at i:497784 original size:19 final size:20
Alignment explanation
Indices: 497748--497786 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
497738 TTTATGACTC
497748 CTAAAACACTACTCACTTTT
1 CTAAAACACTACTCACTTTT
*
497768 CTAAAAC-CTATTCACTTTT
1 CTAAAACACTACTCACTTTT
497787 ATAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38
Consensus pattern (20 bp):
CTAAAACACTACTCACTTTT
Found at i:498885 original size:23 final size:23
Alignment explanation
Indices: 498859--498927 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
498849 TTAACATTAT
* * *
498859 GTGACTGATTGATATGTTATTGC
1 GTGACTGGTTGATAAGTCATTGC
* *
498882 GTGACTGGTTGATAGGTCATTAC
1 GTGACTGGTTGATAAGTCATTGC
*
498905 GTGAGTGGTTGATAAGTCATTGC
1 GTGACTGGTTGATAAGTCATTGC
498928 ATGAATATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.10, G:0.30, T:0.38
Consensus pattern (23 bp):
GTGACTGGTTGATAAGTCATTGC
Found at i:499347 original size:19 final size:19
Alignment explanation
Indices: 499323--499361 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
499313 GCTAGAGGAA
499323 AATTTTAAAATAAAATAAT
1 AATTTTAAAATAAAATAAT
***
499342 AATTTTTGGATAAAATAAT
1 AATTTTAAAATAAAATAAT
499361 A
1 A
499362 GTAAAATAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
AATTTTAAAATAAAATAAT
Found at i:500057 original size:30 final size:30
Alignment explanation
Indices: 500023--500081 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
500013 TAAGAAAAAG
500023 AAAGAATAAATTTTGTTGCATAAAATCTTC
1 AAAGAATAAATTTTGTTGCATAAAATCTTC
500053 AAAGAATAAATTTTGTTGCATAAAATCTT
1 AAAGAATAAATTTTGTTGCATAAAATCTT
500082 ATTGGTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.37
Consensus pattern (30 bp):
AAAGAATAAATTTTGTTGCATAAAATCTTC
Found at i:501179 original size:2 final size:2
Alignment explanation
Indices: 501172--501206 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
501162 AGTTGTTTCC
*
501172 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
501207 GTGCAAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:502201 original size:25 final size:25
Alignment explanation
Indices: 502173--502270 Score: 169
Period size: 25 Copynumber: 3.9 Consensus size: 25
502163 ATACATGTCA
* *
502173 AGGCCATGGGTTGATATATGTGGCT
1 AGGCCACGAGTTGATATATGTGGCT
502198 AGGCCACGAGTTGATATATGTGGCT
1 AGGCCACGAGTTGATATATGTGGCT
502223 AGGCCACGAGTTGATATATGTGGCT
1 AGGCCACGAGTTGATATATGTGGCT
*
502248 AGGCCATGAGTTGATATATGTGG
1 AGGCCACGAGTTGATATATGTGG
502271 TTACGACCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (25 bp):
AGGCCACGAGTTGATATATGTGGCT
Found at i:502215 original size:50 final size:50
Alignment explanation
Indices: 502161--502265 Score: 147
Period size: 50 Copynumber: 2.1 Consensus size: 50
502151 AGTTTGAGAT
* * *
502161 ATATACATGTCAAGGCCATGGGTTGATATATGTGGCTAGGCCACGAGTTG
1 ATATACATGGCAAGGCCACGAGTTGATATATGTGGCTAGGCCACGAGTTG
** * *
502211 ATATATGTGGCTAGGCCACGAGTTGATATATGTGGCTAGGCCATGAGTTG
1 ATATACATGGCAAGGCCACGAGTTGATATATGTGGCTAGGCCACGAGTTG
502261 ATATA
1 ATATA
502266 TGTGGTTACG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.30
Consensus pattern (50 bp):
ATATACATGGCAAGGCCACGAGTTGATATATGTGGCTAGGCCACGAGTTG
Found at i:504755 original size:24 final size:24
Alignment explanation
Indices: 504726--504782 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
504716 GCATATGCAT
* *
504726 GCAATGTAGTTGGAGATCCAACGG
1 GCAATGCAGTTAGAGATCCAACGG
*
504750 GCAATGCAGTTAGAGATCCAATGG
1 GCAATGCAGTTAGAGATCCAACGG
504774 GCAATGCAG
1 GCAATGCAG
504783 CTGTAGATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.19
Consensus pattern (24 bp):
GCAATGCAGTTAGAGATCCAACGG
Found at i:506818 original size:23 final size:23
Alignment explanation
Indices: 506792--506899 Score: 65
Period size: 23 Copynumber: 4.7 Consensus size: 23
506782 GGTGTGTATG
*
506792 GAATCGCGTGAGTAGTTGATATA
1 GAATCACGTGAGTAGTTGATATA
* *
506815 GAATCATGCGAGT-GTTTGATATA
1 GAATCACGTGAGTAG-TTGATATA
* * * ** * *
506838 AAATTACGTGACTAGTAAATTTG
1 GAATCACGTGAGTAGTTGATATA
** * * *
506861 GAATTGCGTTACTAGTTGATATT
1 GAATCACGTGAGTAGTTGATATA
506884 GAATCACGTGAGTAGT
1 GAATCACGTGAGTAGT
506900 AAATATGGAA
Statistics
Matches: 60, Mismatches: 23, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
22 1 0.02
23 58 0.97
24 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (23 bp):
GAATCACGTGAGTAGTTGATATA
Found at i:506934 original size:46 final size:46
Alignment explanation
Indices: 506884--506979 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 46
506874 AGTTGATATT
* *
506884 GAATCACGTGAGTAGTAAATATGGAATTGCATGAACCATTAAGATG
1 GAATCACATGAGTAGTAAATATGGAATTGCATGAACCATTAAAATG
* * ** *
506930 GAATCGCATGATTAGTAAATATGGAATTGTGTGAACCGTTAAAATG
1 GAATCACATGAGTAGTAAATATGGAATTGCATGAACCATTAAAATG
506976 GAAT
1 GAAT
506980 TTTGTGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (46 bp):
GAATCACATGAGTAGTAAATATGGAATTGCATGAACCATTAAAATG
Found at i:506953 original size:23 final size:24
Alignment explanation
Indices: 506896--506956 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
506886 ATCACGTGAG
*
506896 TAGTAAATATGGAATTGCATGAAC
1 TAGTAAATATGGAATCGCATGAAC
* * * *
506920 CA-TTAAGATGGAATCGCATG-AT
1 TAGTAAATATGGAATCGCATGAAC
506942 TAGTAAATATGGAAT
1 TAGTAAATATGGAAT
506957 TGTGTGAACC
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
22 2 0.07
23 25 0.89
24 1 0.04
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (24 bp):
TAGTAAATATGGAATCGCATGAAC
Found at i:506995 original size:46 final size:46
Alignment explanation
Indices: 506899--506997 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 46
506889 ACGTGAGTAG
* * *
506899 TAAATATGGAATTGCATGAACCATTAAGATGGAATCGCATGATTAG
1 TAAATATGGAATTGCATGAACCATTAAAATGGAATCGCATGACTAA
** * ****
506945 TAAATATGGAATTGTGTGAACCGTTAAAATGGAATTTTGTGACTAA
1 TAAATATGGAATTGCATGAACCATTAAAATGGAATCGCATGACTAA
506991 TAAATAT
1 TAAATAT
506998 ACAATTGCGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.32
Consensus pattern (46 bp):
TAAATATGGAATTGCATGAACCATTAAAATGGAATCGCATGACTAA
Found at i:507066 original size:23 final size:23
Alignment explanation
Indices: 506983--507071 Score: 74
Period size: 23 Copynumber: 3.9 Consensus size: 23
506973 ATGGAATTTT
* * *
506983 GTGACTAATAAATATACAATTGC
1 GTGACTAGTAAATATAGAATTGA
* *
507006 GTGACTATGT-GATTTAGAATTGCA
1 GTGACTA-GTAAATATAGAATTG-A
** *
507030 -TGACTAGTTGATATTGAATTGA
1 GTGACTAGTAAATATAGAATTGA
507052 GTGACTAGTAAATATAGAAT
1 GTGACTAGTAAATATAGAAT
507072 CACGTTACTA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
22 3 0.06
23 48 0.92
24 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (23 bp):
GTGACTAGTAAATATAGAATTGA
Found at i:507118 original size:23 final size:23
Alignment explanation
Indices: 507068--507118 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
507058 AGTAAATATA
*
507068 GAATCACGTTACTAGTTATTATG
1 GAATCACGTAACTAGTTATTATG
* *
507091 TAATCGCGTAACTAGTTGATT-TG
1 GAATCACGTAACTAGTT-ATTATG
507114 GAATC
1 GAATC
507119 CTATGATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (23 bp):
GAATCACGTAACTAGTTATTATG
Found at i:513136 original size:22 final size:22
Alignment explanation
Indices: 513084--513146 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
513074 CTGACCCAAC
* *
513084 GTCACGTAATACATAACAACAA
1 GTCACGCAATACATAAAAACAA
* *
513106 GTTATGCAATACATAAAAATC-A
1 GTCACGCAATACATAAAAA-CAA
* *
513128 GTCACGCAATGCCTAAAAA
1 GTCACGCAATACATAAAAA
513147 GTACTTAAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.48, C:0.21, G:0.11, T:0.21
Consensus pattern (22 bp):
GTCACGCAATACATAAAAACAA
Found at i:513319 original size:22 final size:22
Alignment explanation
Indices: 513273--513326 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
513263 TTAGCCCAAC
*
513273 GTCACGCAATACATAACAACAA
1 GTCACGCAATACATAAAAACAA
*
513295 GTCATGCAATACATAAAAATC-A
1 GTCACGCAATACATAAAAA-CAA
*
513317 GTCACACAAT
1 GTCACGCAAT
513327 GTCTTAACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.48, C:0.24, G:0.09, T:0.19
Consensus pattern (22 bp):
GTCACGCAATACATAAAAACAA
Found at i:513581 original size:22 final size:22
Alignment explanation
Indices: 513510--513574 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
513500 ACCAAACACG
* * *
513510 CAATGCTTAATATCTATTCAGA
1 CAATGCATAATATCCATTCACA
513532 CAATGCATAATATCCATTCACA
1 CAATGCATAATATCCATTCACA
513554 CAATGCATAATA-CACATTCAC
1 CAATGCATAATATC-CATTCAC
513575 TTAATGCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
21 1 0.03
22 38 0.97
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (22 bp):
CAATGCATAATATCCATTCACA
Found at i:514368 original size:22 final size:22
Alignment explanation
Indices: 514334--514388 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
514324 TAAAAGTCAA
* *
514334 TCACGCAATGCCTGCAAACAAG
1 TCACGTAATGCCTACAAACAAG
* *
514356 TTACGTAATGCCTACAAACCAG
1 TCACGTAATGCCTACAAACAAG
514378 TCACGTAATGC
1 TCACGTAATGC
514389 ACAACTCACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (22 bp):
TCACGTAATGCCTACAAACAAG
Found at i:517464 original size:2 final size:2
Alignment explanation
Indices: 517457--517488 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
517447 CAAAGATTAA
517457 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
517489 ACTTTATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:523510 original size:2 final size:2
Alignment explanation
Indices: 523503--523540 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
523493 CTGCTTGCAT
* *
523503 TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TG TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
523541 GCTTGCTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
TC
Found at i:536188 original size:80 final size:81
Alignment explanation
Indices: 536086--536256 Score: 238
Period size: 80 Copynumber: 2.1 Consensus size: 81
536076 GATTATGAGA
* * * *
536086 TTGTGCCTCTAATCCTCCTATACATCAAGTTTCTCATTT-AAAGATTACTTGCTTAATTTCCCAG
1 TTGTGCCTCTAATCCTCCTATACATAAAGTTTCTCATTTAAAAG-GTACTCGATTAATTTCCCAG
*
536150 TTGCGTGCATAGC-TTT
65 TTACGTGCATAGCTTTT
* *
536166 TTGTGCCTCTAATCCTCGTATACTTAAAGTTTCTCATTTAAAAGGTACTCGATTAATTTCCCAGT
1 TTGTGCCTCTAATCCTCCTATACATAAAGTTTCTCATTTAAAAGGTACTCGATTAATTTCCCAGT
*
536231 TACGTTCATAGCTTTT
66 TACGTGCATAGCTTTT
*
536247 TTGTGGCTCT
1 TTGTGCCTCT
536257 CTATGCTTTC
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 64 0.80
81 16 0.20
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (81 bp):
TTGTGCCTCTAATCCTCCTATACATAAAGTTTCTCATTTAAAAGGTACTCGATTAATTTCCCAGT
TACGTGCATAGCTTTT
Found at i:538877 original size:23 final size:23
Alignment explanation
Indices: 538842--538886 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
538832 GGGTTTAATA
*
538842 TTGCGTGACTGGTTGATAGGTCG
1 TTGCATGACTGGTTGATAGGTCG
*
538865 TTGCATGAGTGGTTGATAGGTC
1 TTGCATGACTGGTTGATAGGTC
538887 ATTGTGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.38, T:0.36
Consensus pattern (23 bp):
TTGCATGACTGGTTGATAGGTCG
Found at i:538975 original size:23 final size:23
Alignment explanation
Indices: 538949--539000 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
538939 TTAAGGTTTA
*
538949 CATTGTGTGACTGGTTGATAGGT
1 CATTGCGTGACTGGTTGATAGGT
*
538972 CATTGCGTGAGTGGTTGATAGGT
1 CATTGCGTGACTGGTTGATAGGT
538995 CATTGC
1 CATTGC
539001 AAGAATAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.17, C:0.12, G:0.35, T:0.37
Consensus pattern (23 bp):
CATTGCGTGACTGGTTGATAGGT
Found at i:538988 original size:109 final size:110
Alignment explanation
Indices: 538815--539024 Score: 305
Period size: 109 Copynumber: 1.9 Consensus size: 110
538805 TCACTTAGGA
* * *
538815 TGTGCATGATTGCACTAGGGTTTAATATTGCGTGACTGGTTGATAGGTCGTTGCATGAGTGGTTG
1 TGTGCATGATTGCACTAAGGTTTAACATTGCGTGACTGGTTGATAGGTCATTGCATGAGTGGTTG
*** *
538880 ATAGGTCATTGTGTGAATATTGTTCAGGCATGGTGTTAATTAAGG
66 ATAGGTCATTGCAAGAATAATGTTCAGGCATGGTGTTAATTAAGG
* * * *
538925 TGTGTATGATTGCATTAAGGTTT-ACATTGTGTGACTGGTTGATAGGTCATTGCGTGAGTGGTTG
1 TGTGCATGATTGCACTAAGGTTTAACATTGCGTGACTGGTTGATAGGTCATTGCATGAGTGGTTG
*
538989 ATAGGTCATTGCAAGAATAATGTTTAGGCATGGTGT
66 ATAGGTCATTGCAAGAATAATGTTCAGGCATGGTGT
539025 CACTTAGTGT
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
109 68 0.77
110 20 0.23
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (110 bp):
TGTGCATGATTGCACTAAGGTTTAACATTGCGTGACTGGTTGATAGGTCATTGCATGAGTGGTTG
ATAGGTCATTGCAAGAATAATGTTCAGGCATGGTGTTAATTAAGG
Found at i:541635 original size:26 final size:26
Alignment explanation
Indices: 541577--541642 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
541567 CATTATTCTT
* * *
541577 TATCATCTCCAAATTATTCTTTGTTG
1 TATCATTTACAAATTATTCTTTGTTA
* *
541603 TATCATTTACAAATTTTTCTTTTTTA
1 TATCATTTACAAATTATTCTTTGTTA
541629 TATCATTTAACAAA
1 TATCATTT-ACAAA
541643 GAGAAAAGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 29 0.85
27 5 0.15
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (26 bp):
TATCATTTACAAATTATTCTTTGTTA
Found at i:542140 original size:23 final size:23
Alignment explanation
Indices: 542066--542142 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
542056 TATTGAATCA
* *
542066 CGTGAGTAGTAAATATGGAATTG
1 CGTGACTAGTAAATATGAAATTG
* * * * *
542089 CGTGAATCGTTAAGATGAAATCG
1 CGTGACTAGTAAATATGAAATTG
*
542112 CTTGACTAGTAAATATGAAATTG
1 CGTGACTAGTAAATATGAAATTG
542135 CGTGACTA
1 CGTGACTA
542143 TATGATTTAG
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (23 bp):
CGTGACTAGTAAATATGAAATTG
Found at i:543975 original size:17 final size:17
Alignment explanation
Indices: 543953--543985 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
543943 TCATCAAAAG
*
543953 CTCACAACCACTACTTA
1 CTCACAACCACCACTTA
543970 CTCACAACCACCACTT
1 CTCACAACCACCACTT
543986 CTTAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.21
Consensus pattern (17 bp):
CTCACAACCACCACTTA
Found at i:547931 original size:22 final size:22
Alignment explanation
Indices: 547903--547944 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
547893 ATGTCGTGCT
*
547903 ATACATAAAAACCAGCCACAGA
1 ATACATAAAAACCAGACACAGA
*
547925 ATACATAACAACCAGACACA
1 ATACATAAAAACCAGACACA
547945 CAATGCCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.29, G:0.07, T:0.10
Consensus pattern (22 bp):
ATACATAAAAACCAGACACAGA
Found at i:548818 original size:22 final size:22
Alignment explanation
Indices: 548790--548840 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
548780 TAAAAGCAAC
*
548790 GTAATGCCTACAAACCAGTCAA
1 GTAATGCCTACAAACCAGACAA
* * *
548812 GTAATGCTTACAAACTAGACAC
1 GTAATGCCTACAAACCAGACAA
548834 GTAATGC
1 GTAATGC
548841 ACAAATCATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.22
Consensus pattern (22 bp):
GTAATGCCTACAAACCAGACAA
Found at i:550217 original size:36 final size:36
Alignment explanation
Indices: 550176--550246 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
550166 AAAAATGTAA
*
550176 TTTAAAATTATCATTAAAAAACCT-AGACGTAAAGTT
1 TTTAAAATTATCACTAAAAAACCTGA-ACGTAAAGTT
* * *
550212 TTTAAAGTTATGACTAAAAATCCTGAACGTAAAGT
1 TTTAAAATTATCACTAAAAAACCTGAACGTAAAGT
550247 AATAAGAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (36 bp):
TTTAAAATTATCACTAAAAAACCTGAACGTAAAGTT
Found at i:550820 original size:252 final size:252
Alignment explanation
Indices: 550248--552923 Score: 2791
Period size: 252 Copynumber: 10.7 Consensus size: 252
550238 ACGTAAAGTA
* * * * * ***
550248 ATAAGAATT-ACCATAAAAACTCATAAAGGTAGAATAATTAAATTTAAAATCTT-A-ATGTGTGT
1 ATAAGAATTGA-CGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGT
* * * * * * * *
550310 GCGAGACTAAACGTAACAAGTCAATGAA--AGAAAAAATTTGAATTTTAATGAAAATA-AAATAT
65 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCT-AATTTTAGTGAAAA-ACAAACAT
* *
550372 TTAGA-TTATATTCTTGGACTAAAAGTGTTTATCGATATACAAATTTTAATTTTTAAATAAAAAA
128 TTAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAA
*
550436 TAAT-A--ATAAAAATAATTATAATTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
193 TAATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * * *
550493 GTAACAATTGACGTAAAAACTTATAAAGGTGGGATAACTAAATTTTAAATCTGAACGTAAATATG
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * *
550558 TGAGAGTTAACGTAATAAGTCAATTAAGCAAAAAAAATCTAATTTTAGTAAAAAACAAACATTTA
66 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
* * * *
550623 AATTTATATTCTTGGATTCAAAGTGTTCAACAATATACAAATTTTAATTTTTAAATAAAAAATAA
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
* * * *
550688 TAAGGATATAAATAATTATAGCTT-AAAATTAACACAGAAAAGCCTTGACGTAAAACT
196 TAAGGATAAAAATAATTATAG-TTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * * * * * * * * *
550745 GTACGAATCGATGTAAAAACTTCTAAAAGTAGAATAAGTATATTTTAAATCTTAATATAAATATA
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * *
550810 TGAAAGTTAACGTAACAAGTCAATTAAGTAAAAAAGAAAT-TAATTTTAGTGAAAAATAAATATT
66 TGAGAGTTAACGTAACAAGTCAATTAAGT-AAAAA-AAATCTAATTTTAGTGAAAAACAAACATT
550874 TAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAAT
129 TAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAAT
* * * * *
550939 AATAA--TTAAAAA-ATTTATAGTTCAAAATTGATATGGATAAGCCTTGACGTAAAATT
194 AATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * *
550995 ATAAGAATTGACGTAAAACCTTATAAAGGTGGAATAATTAAATTTTAAATCTTAATATAAATATA
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * * * * * *
551060 TAAAAGGTAACATAATAAGTTAATTAAGTAAAAAAAATCTAATTTTAATGAAAAACAAACATTTA
66 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
* * * * ** * * * * * *
551125 TATTTATATTATCGGACTAAAAGTATGCAATGACATTCAAATTTTTATTTTTTAAGAAAAAATAA
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
* * * * *
551190 TAAGAATAAAAATAATTATAGTTCAAAATTTACATAGAAAAACTTTGACGTAAAACT
196 TAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * *
551247 ATAAAAATTGGCATAAAAACTTATAAAGGTGAAATAATTAAATTTTAAATCTTAACATAAATGTG
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * * * *
551312 TTAGAGTTAACATAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTATTGAAAAATAAATATTT
66 TGAGAGTTAACGTAACAAGTCAATTAAGT-AAAAAAAATCTAATTTTAGTGAAAAACAAACATTT
* * * *
551377 AAATTTATATTCTCGAAATGAAAA-TATTTAACGATATACAAATTTTAATTTTTAAAT-AAAAAT
130 AAATTTATATTCTTGGACT-AAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAAT
* * * ** *
551440 AATAAAGATAAAAATAATTATAATTTAAAATTGGTATAGATAAGCCTTGACAT-AAACT
194 AATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * *
551498 ATAATAATTGACGTAAAAACTTACAAAGGTGGAATAACT-AATTTTAAATCTTAACGTAAACGTA
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * * *
551562 TGAGAGTTAATGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTTGTGAAAAATAAATATTT
66 TGAGAGTTAACGTAACAAGTCAATTAAGT-AAAAAAAATCTAATTTTAGTGAAAAACAAACATTT
* * ** * * *
551627 AAATTTATATTCTCGAACTAAAAGTGTTTAAAAATATATAAATTTTTATTTTTAAATAAAGAATA
130 AAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATA
* ** * * * * * * *
551692 ATAAGGATAAAAATATTTATAGTTTGAAATTGAAAAAGATCAGTCTTAACATAAAATT
195 ATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* ** * * *
551750 ATAACAATTGACGTAAAAACTTATAAAGGTAAAATAACTATATTTTAAATCTT-A-AT--GTTTG
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * *
551811 TGAGAGTTAACGTAACAAGTTAATTAAGT-AAAAAAATCTAATTTTAATGAAAAACAAACATATA
66 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
* * * * *
551875 AATTTATATTCTTGGACTAAAAGTGTTCAACAATATACAAATTTTAATTTTAAAACAAAGAATAA
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
* * * * **
551940 TAAAGATAAAAATAATTATAATTCAAAATTCATATAGATAAGTTTTGACGT-AAACT
196 TAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * * * *
551996 ATAATAATTGATGTAAAAACTTATAAAGATGAAATAACTAAATTTTAAATTTTAA-AGTAAATGT
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACA-TAAATGT
* * * *
552060 GTGAGAGTTAACGTCACAAGTCAATTAAGTAAAATAAATCTAATTTTAGTGAAAAATAAATATTT
65 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTT
* *
552125 AAATTTATATTCTTTGG-CTAAAAGTAG-TTAACGATATATAAATTTTAATTTTTAAATAAAGAA
130 AAATTTATATTC-TTGGACTAAAAGT-GTTTAACGATATACAAATTTTAATTTTTAAATAAAAAA
* * * *
552188 TAATAATG--AAAAA-AATTATAGTTCAAAATTGACATACATAAGCCTTAATGTAAAACT
193 TAATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* * *
552245 ATAAGAATTGACATAAAAACTTATAAAGGTGGAATAACTAAAATTTAAATCTTAACATAAATATG
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* * * * * *
552310 TGAAAGTTAATGTAATAAGTTAATTAAGCAAAAAAAATCTAATTTTAATGAAAAACAAACATTTA
66 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
* * * ** * * * *
552375 TATTTATATTATTGGACTAAAAGTATGCAATGATATTCGAATTTTTATTCTTT-AATAAAAAATA
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATT-TTTAAATAAAAAATA
* * * *
552439 ATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGAGAAACCTT-ATTGTAAAATT
195 ATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGA-CGTAAAACT
* * * * * *
552497 GTGAGAATTGACATAAAAACTTGTAAAGGTGAAATAATTAAATTTTAAATCTTAACA-AACATGT
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAA-ATGT
* * * *
552561 GTGAGAGTTAACATAACAAGTCAATTAAATAAAAAAAATCTAATTCTAATGAAAAACAAACATTT
65 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTT
* * * *
552626 AAATTTATATTCTCGGAATAAAAGTAG-TTAA-GAATATACCAATTTTAATTTTTAAAT-AAAAG
130 AAATTTATATTCTTGGACTAAAAGT-GTTTAACG-ATATACAAATTTTAATTTTTAAATAAAAAA
* * * ** *
552688 CAATAAGG---------A-TATAGTTAAAAATTGACATAGAAAAATCTTGACATAAAACT
193 TAATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
* ** * * * **
552738 GTAAGAATTGATATAAAAATTTATAAAGGTGAAACAACTAAATTTTAAATCTTAATGTAAATGTG
1 ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
* *** * * * * * *
552803 TGAGAATTATTTTGACAAGCCAATTAAGTAAAAAAATTCTAATTTTAGTAAAAAATAAATATTTA
66 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
** * * *
552868 AATTTATATTCTCAGACTAAAAGTGTTTAACGATATGCAAGTTTTAATTGTTAAAT
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAAT
552924 TGTAACGACT
Statistics
Matches: 2044, Mismatches: 339, Indels: 100
0.82 0.14 0.04
Matches are distributed among these distances:
240 1 0.00
241 185 0.09
242 5 0.00
245 42 0.02
246 53 0.03
247 155 0.08
248 60 0.03
249 353 0.17
250 276 0.14
251 208 0.10
252 520 0.25
253 178 0.09
254 8 0.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.33
Consensus pattern (252 bp):
ATAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTG
TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTA
AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
TAAGGATAAAAATAATTATAGTTCAAAATTGACATAGATAAGCCTTGACGTAAAACT
Found at i:551322 original size:502 final size:503
Alignment explanation
Indices: 550248--552923 Score: 2752
Period size: 502 Copynumber: 5.4 Consensus size: 503
550238 ACGTAAAGTA
* * * ***
550248 ATAAGAATT-ACCATAAAAACTCATAAAGGT-AGAATAATTAAATTTAAAATCTT-AATGTGTGT
1 ATAAGAATTGA-CATAAAAACTTATAAAGGTGA-AATAACTAAATTTTAAATCTTAAATAAATGT
* * * *
550310 GCGAGACTAAACGTAACAAGTCAA-T--G-AAAGAAAAAATTTGAATTTTAATG-AAAATAAAAT
64 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAA-AAAAAATCT-AATTTTAATGAAAAAT-AAAT
* *
550370 ATTTAGA-TTATATTCTTGGACTAAAAGTGTTTATCGATATACAAATTTTAATTTTTAAATAAAA
126 ATTTAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAA
* *
550434 AATAAT-A-ATAAAAATAATTATAATTCAAAATTGACATAGATAAGCCTTGACGTAAAACTGTAA
191 AATAATAAGATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGACGTAAAACTATAA
* * * * *
550497 CAATTGACGTAAAAACTTATAAAGGTGGGATAACTAAATTTTAAATCTGAACGTAAATATGTGAG
256 GAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTGTGAG
* * *
550562 AGTTAACGTAATAAGTCAATTAAGCAAAAAAAATCTAATTTTAGTAAAAAACAAACATTTAAATT
321 AGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATT
* * * * * * *
550627 TATATTCTTGGATTCAAAGTGT-TCAACAATATA-CAAATTTTAATTTTTAAATAAAAAATAATA
386 TATATTCTCGGACTAAAAGTATGT-AACGATATATCAAATTTTTATTTTTTAA-AAAAAATAATA
* * * * * *
550690 AGGATATAAATAATTATAGCTT-AAAATTAACACAGAAAAGCCTTGACGTAAAACT
449 AGAATAAAAATAATTATAG-TTCAAAATTGACATAGAAAAACTTTGACGTAAAACT
* * * ** * * * * *
550745 GTACGAATCGATGTAAAAACTTCTAAAAGT-AGAATAAGTATATTTTAAATCTTAATATAAATAT
1 ATAAGAATTGACATAAAAACTTATAAAGGTGA-AATAACTAAATTTTAAATCTTAA-ATAAATGT
* * *
550809 ATGAAAGTTAACGTAACAAGTCAATTAAGTAAAAAAGAAAT-TAATTTTAGTGAAAAATAAATAT
64 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAA-AAATCTAATTTTAATGAAAAATAAATAT
550873 TTAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAA
128 TTAAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAA
* * * * *
550938 TAATAA-TTAAAAA-ATTTATAGTTCAAAATTGATATGGATAAGCCTTGACGTAAAATTATAAGA
193 TAATAAGATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGACGTAAAACTATAAGA
* * * * * * *
551001 ATTGACGTAAAACCTTATAAAGGTGGAATAATTAAATTTTAAATCTTAATATAAATATATAAAAG
258 ATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTGTGAGAG
* * * * * *
551066 GTAACATAATAAGTTAATTAAGTAAAAAAAATCTAATTTTAATGAAAAACAAACATTTATATTTA
323 TTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATTTA
* * * *
551131 TATTATCGGACTAAAAGTATGCAATGACAT-TCAAATTTTTATTTTTTAAGAAAAAATAATAAGA
388 TATTCTCGGACTAAAAGTATGTAACGATATATCAAATTTTTATTTTTTAA-AAAAAATAATAAGA
*
551195 ATAAAAATAATTATAGTTCAAAATTTACATAGAAAAACTTTGACGTAAAACT
452 ATAAAAATAATTATAGTTCAAAATTGACATAGAAAAACTTTGACGTAAAACT
* * *
551247 ATAAAAATTGGCATAAAAACTTATAAAGGTGAAATAATTAAATTTTAAATCTTAACATAAATGTG
1 ATAAGAATTGACATAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCTTAA-ATAAATGTG
* * *
551312 TTAGAGTTAACATAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTATTGAAAAATAAATATTT
65 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTAATGAAAAATAAATATTT
* * * *
551377 AAATTTATATTCTCGAAATGAAAA-TATTTAACGATATACAAATTTTAATTTTTAAAT-AAAAAT
130 AAATTTATATTCTTGGACT-AAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAAT
* * * *
551440 AATAAAGATAAAAATAATTATAATTTAAAATTGGTATAGATAAGCCTTGACAT-AAACTATAATA
194 AAT-AAGATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGACGTAAAACTATAAGA
* * * *
551504 ATTGACGTAAAAACTTACAAAGGTGGAATAACT-AATTTTAAATCTTAACGTAAACGTATGAGAG
258 ATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTGTGAGAG
* * * *
551568 TTAATGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTTGTGAAAAATAAATATTTAAATTT
323 TTAACGTAACAAGTCAATTAAGT-AAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATTT
* * * **
551633 ATATTCTCGAACTAAAAGTGTTTAAAAATATAT-AAATTTTTA-TTTTTAAATAAAGAATAATAA
387 ATATTCTCGGACTAAAAGTATGTAACGATATATCAAATTTTTATTTTTTAAA-AAA-AATAATAA
* * ** * * ** * * * *
551696 GGATAAAAATATTTATAGTTTGAAATTGAAAAAG-ATCAGTCTTAACATAAAATT
450 GAATAAAAATAATTATAGTTCAAAATTGACATAGAAAAACT-TTGACGTAAAACT
* * * * * *
551750 ATAACAATTGACGTAAAAACTTATAAAGGTAAAATAACTATATTTTAAATCTT-AAT--GTTTGT
1 ATAAGAATTGACATAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCTTAAATAAATGTGT
* * * *
551812 GAGAGTTAACGTAACAAGTTAATTAAGT--AAAAAAATCTAATTTTAATGAAAAACAAACATATA
66 GAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTAATGAAAAATAAATATTTA
* * * * *
551875 AATTTATATTCTTGGACTAAAAGTGTTCAACAATATACAAATTTTAATTTTAAAACAAAGAATAA
131 AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
* ** *
551940 TAAAGATAAAAATAATTATAATTCAAAATTCATATAGATAAGTTTTGACGT-AAACTATAATAAT
196 T-AAGATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGACGTAAAACTATAAGAAT
* * * *
552004 TGATGTAAAAACTTATAAAGATGAAATAACTAAATTTTAAATTTTAA-AGTAAATGTGTGAGAGT
260 TGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACA-TAAATGTGTGAGAGT
* * * *
552068 TAACGTCACAAGTCAATTAAGTAAAATAAATCTAATTTTAGTGAAAAATAAATATTTAAATTTAT
324 TAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATTTAT
* * * * *
552133 ATTCTTTGG-CTAAAAGTA-GTTAACGATATAT-AAA-TTTTAATTTTT-AAATAAAGAATAATA
389 ATTC-TCGGACTAAAAGTATG-TAACGATATATCAAATTTTTATTTTTTAAAAAAAATAATAAGA
* * * * * *
552193 ATGAAAAA-AATTATAGTTCAAAATTGACATACATAAGCCTTAATGTAAAACT
452 AT-AAAAATAATTATAGTTCAAAATTGACATAGAAAAACTTTGACGTAAAACT
* * *
552245 ATAAGAATTGACATAAAAACTTATAAAGGTGGAATAACTAAAATTTAAATCTTAACATAAATATG
1 ATAAGAATTGACATAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCTTAA-ATAAATGTG
* * * * * * *
552310 TGAAAGTTAATGTAATAAGTTAATTAAG-CAAAAAAAATCTAATTTTAATGAAAAACAAACATTT
65 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTAATGAAAAATAAATATTT
* * * ** * * * *
552374 ATATTTATATTATTGGACTAAAAGTATGCAATGATATTCGAATTTTTATTCTTT-AATAAAAAAT
130 AAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATT-TTTAAATAAAAAAT
* * * * * * * *
552438 AATAAGGATAAAAATAATTATAGTTCAAAATTGACATAGAGAAACCTT-ATTGTAAAATTGTGAG
194 AATAA-GATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGA-CGTAAAACTATAAG
* * * *
552502 AATTGACATAAAAACTTGTAAAGGTGAAATAATTAAATTTTAAATCTTAACA-AACATGTGTGAG
257 AATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAA-ATGTGTGAG
* * * *
552566 AGTTAACATAACAAGTCAATTAAATAAAAAAAATCTAATTCTAATGAAAAACAAACATTTAAATT
321 AGTTAACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATT
* * *
552631 TATATTCTCGGAATAAAAGTA-GTTAA-GA-ATATACCAA-TTTTAATTTTT-----AAATAA-A
386 TATATTCTCGGACTAAAAGTATG-TAACGATATAT-CAAATTTTTATTTTTTAAAAAAAATAATA
** * *
552686 AGCAAT---AAGGA-TATAGTTAAAAATTGACATAGAAAAA-TCTTGACATAAAACT
449 AG-AATAAAAATAATTATAGTTCAAAATTGACATAGAAAAACT-TTGACGTAAAACT
* * * * *
552738 GTAAGAATTGATATAAAAATTTATAAAGGTGAAACAACTAAATTTTAAATCTTAATGTAAATGTG
1 ATAAGAATTGACATAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCTTAA-ATAAATGTG
* *** * * * * *
552803 TGAGAATTATTTTGACAAGCCAATTAAGT-AAAAAAATTCTAATTTTAGTAAAAAATAAATATTT
65 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTAATGAAAAATAAATATTT
** * * *
552867 AAATTTATATTCTCAGACTAAAAGTGTTTAACGATATGCAAGTTTTAATTGTTAAAT
130 AAATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAAT
552924 TGTAACGACT
Statistics
Matches: 1823, Mismatches: 302, Indels: 112
0.81 0.14 0.05
Matches are distributed among these distances:
492 2 0.00
493 181 0.10
494 1 0.00
495 84 0.05
496 14 0.01
497 131 0.07
498 164 0.09
499 136 0.07
500 130 0.07
501 188 0.10
502 535 0.29
503 224 0.12
504 33 0.02
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.33
Consensus pattern (503 bp):
ATAAGAATTGACATAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCTTAAATAAATGTGT
GAGAGTTAACGTAACAAGTCAATTAAGTAAAAAAAAATCTAATTTTAATGAAAAATAAATATTTA
AATTTATATTCTTGGACTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAA
TAAGATAAAAATAATTATAATTCAAAATTGATATAGATAAGCCTTGACGTAAAACTATAAGAATT
GACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACATAAATGTGTGAGAGTTA
ACGTAACAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATTTATAT
TCTCGGACTAAAAGTATGTAACGATATATCAAATTTTTATTTTTTAAAAAAAATAATAAGAATAA
AAATAATTATAGTTCAAAATTGACATAGAAAAACTTTGACGTAAAACT
Found at i:554794 original size:15 final size:15
Alignment explanation
Indices: 554774--554804 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
554764 ACAACAACTA
554774 TCCTTTAATTACAAT
1 TCCTTTAATTACAAT
554789 TCCTTTAATTACAAT
1 TCCTTTAATTACAAT
554804 T
1 T
554805 TCTTGGCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.48
Consensus pattern (15 bp):
TCCTTTAATTACAAT
Found at i:557261 original size:250 final size:252
Alignment explanation
Indices: 556635--557292 Score: 773
Period size: 253 Copynumber: 2.6 Consensus size: 252
556625 GGATCTTACA
* *
556635 TAAATAAAGAACAAT-AAGAATAAAAATAATTATAGTTCAAAATTGACATAGAAAAGCCTTGACA
1 TAAATAAAGAATAATAAAG-AT-AAAATAATTATAGTTCAAAATTGACATAGAAAAGGCTTGACA
* *
556699 TAAAACTATAACAATTGATGTAACAA-CTTATAAAGGTGGAATCACTAAATTTTAAATCTTAACG
64 TAAAACTATAACAATTGACGTAA-AATCTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACG
* * * * *
556763 TAAATGTGTAAGAGTTAACGTAACAAGTCAATTTAGTGAAAAATAATCTAATTTTAGTAAAAAAT
128 TAAATGTGTGAGAGTTAACATAACAAGTCAATTAAGTGAAAAATAATCTAATTTTAATAAAAAAC
* * *
556828 AAATATTTAAATTTATATTCTCGAGCTAAAAGTGTTTAATGATATACAAATTTTAATTTT
193 AAATATTTAAATTTATATTCTAGAGCTAAAAGTATGTAATGATATACAAATTTTAATTTT
* *
556888 TAAATAAAGAATAATGATA-ATAGAAATAATTATAGTTCAAAATTGACATAGATAA-GCTTTGAC
1 TAAATAAAGAATAAT-AAAGATA-AAATAATTATAGTTCAAAATTGACATAGAAAAGGC-TTGAC
* * *
556951 ATAAAACTATAATAATTGACGTAAAAAT-TGATAAAGGTGAAATAACTAAATTTTAAATCTTAAC
63 ATAAAACTATAACAATTGACGT-AAAATCTTATAAAGGTGGAATAACTAAATTTTAAATCTTAAC
* * * * * *
557015 GTAAATGTGTGATAGTTAATATAATAAGTTAATTAAGT-AAAAA-AATCTAATTTTAATGACAAA
127 GTAAATGTGTGAGAGTTAACATAACAAGTCAATTAAGTGAAAAATAATCTAATTTTAATAAAAAA
* * * * *
557078 CAAATATTTATATTTATATTGTTAG-GCTAAAGGTATGTAATGATATTCAAATTTTTA-TTT
192 CAAATATTTAAATTTATATT-CTAGAGCTAAAAGTATGTAATGATATACAAATTTTAATTTT
*
557138 TAAATAAAGAATAATAAAGATAAAGATAATTATAGTT-AAAAGTT-ACTATTGAAAAGGCTTGAC
1 TAAATAAAGAATAATAAAGATAAA-ATAATTATAGTTCAAAA-TTGAC-ATAGAAAAGGCTTGAC
* * ** * * ** * *
557201 GTTAAGTTATAAGAATTGACGTAAAATCTTATAAAAGTGGAATAAGAAAATTTAAAATCTTAACA
63 ATAAAACTATAACAATTGACGTAAAATCTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACG
*
557266 T-AGTGTGTGAGAGTTAACATAACAAGT
128 TAAATGTGTGAGAGTTAACATAACAAGT
557293 GATAATAATA
Statistics
Matches: 345, Mismatches: 47, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
249 37 0.11
250 94 0.27
251 64 0.19
252 9 0.03
253 138 0.40
254 2 0.01
255 1 0.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (252 bp):
TAAATAAAGAATAATAAAGATAAAATAATTATAGTTCAAAATTGACATAGAAAAGGCTTGACATA
AAACTATAACAATTGACGTAAAATCTTATAAAGGTGGAATAACTAAATTTTAAATCTTAACGTAA
ATGTGTGAGAGTTAACATAACAAGTCAATTAAGTGAAAAATAATCTAATTTTAATAAAAAACAAA
TATTTAAATTTATATTCTAGAGCTAAAAGTATGTAATGATATACAAATTTTAATTTT
Found at i:567174 original size:35 final size:36
Alignment explanation
Indices: 567099--567281 Score: 182
Period size: 35 Copynumber: 5.2 Consensus size: 36
567089 TCTCAAGAAC
*
567099 TTGATTAAAATTGTTTAATTAA---GTTATGCCTAA
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
* * *
567132 TTAATT-AAATTATTTAATTAAGTTGTTAGGCCTAG
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
*** *
567167 TTGATTAAAATTGTTTAATTAAGCCATTAGGCTTAA
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
**
567203 TTGATTAAAATT-TTTAATTAAAG-TGTTAGGTTTAA
1 TTGATTAAAATTGTTTAATT-AAGTTGTTAGGCCTAA
* * * *
567238 TTAATT-ATATTGTTTAATTAAGTTATTGGGCCTAA
1 TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
567273 TTGATTAAA
1 TTGATTAAA
567282 TTAAATAATT
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
32 14 0.12
33 5 0.04
34 7 0.06
35 55 0.46
36 39 0.32
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.46
Consensus pattern (36 bp):
TTGATTAAAATTGTTTAATTAAGTTGTTAGGCCTAA
Done.