Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400460.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3657.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.21, C:0.10, G:0.09, T:0.23

Warning! 477 characters in sequence are not A, C, G, or T


Found at i:504 original size:172 final size:169

Alignment explanation


    Indices: 5--520  Score: 436
    Period size: 172  Copynumber: 3.0  Consensus size: 169

          1 AAGG

                *                                      *      *           *  
          5 CTTACTACTTGCTTTAAATGGTTTTATAAGCTCATAATTGATTGTAAGTTGATTTGTTTTTATAT
          1 CTTATTACTTGCTTTAAATGGTTTTATAAGCTCATAATTGATTTTAAGTTAATTTG-TTTTACAT

                **                       *             **                *   
         70 TTTTCCTTAAAACAGACTATAATTGAATGGCTACCTTGGGAAAGGTGAAGACAACAG-CATCCAC
         65 TTTTGATTAAAACAGACTATAATTGAATGCCTACCTT-GGAAACATGAAG-CAA-AGACATTCAC

                            *            *             
        134 TAGCAAGAAAAGTCAACTTATAGTCTCCTATTCCTTTAAAAGC
        127 TAGCAAGAAAAGTCAATTTATAGTCTCCTGTTCCTTTAAAAGC

            *        **             *             *      *                *  
        177 TTTATTACTCACTTTAAATGGTTTCATAAGCTCGA-AACTGATTTCAA-TTCGAATTCT-TTGTA
          1 CTTATTACTTGCTTTAAATGGTTTTATAAGCTC-ATAATTGATTTTAAGTT--AATT-TGTTTTA

                           **   *     *       *                *   *   *   * 
        239 CATTTTTGGA-TAAATTAG-TTATAACT-AAGTGTCTACCTTGAGAAACATCAAGAAAAAAGCTT
         62 CATTTTT-GATTAAAACAGACTATAATTGAA-TGCCTACCTTG-GAAACATGAAGCAAAGA-CAT

             **********       *                     *      
        301 TNNNNNNNNNNAAAAGTCTATTTATAGTCTCCTGTTCCTTCAAAAGC
        123 TCACTAGCAAGAAAAGTCAATTTATAGTCTCCTGTTCCTTTAAAAGC

                           *                                                 
        348 CTTATTACTTGCTTTCAATGGTTTTAT-AGTCTCATAATTGATTTTAAGTTAATTTGGTTTTACA
          1 CTTATTACTTGCTTTAAATGGTTTTATAAG-CTCATAATTGATTTTAAGTTAATTT-GTTTTACA

                               *                                            *
        412 TTTTTGATTAAAACAGACTGTAATTGAATGCCTACCTTAGGAAACATGAAGCCAAAGACATTCAT
         64 TTTTTGATTAAAACAGACTATAATTGAATGCCTACCTT-GGAAACATGAAG-CAAAGACATTCAC

                                        *              
        477 TAGCAAGAAAAGTCAATTTATAGTCTCCCGTTCCTTTAAAAGC
        127 TAGCAAGAAAAGTCAATTTATAGTCTCCTGTTCCTTTAAAAGC

             
        520 C
          1 C

        521 CTAATANNNN


Statistics
Matches: 255,  Mismatches: 70, Indels: 38
        0.70            0.19        0.10

Matches are distributed among these distances:
 169    2  0.01
 170   14  0.05
 171  111  0.44
 172  116  0.45
 173   11  0.04
 174    1  0.00

ACGTcount: A:0.32, C:0.16, G:0.14, T:0.36


Consensus pattern (169 bp):   
CTTATTACTTGCTTTAAATGGTTTTATAAGCTCATAATTGATTTTAAGTTAATTTGTTTTACATT
TTTGATTAAAACAGACTATAATTGAATGCCTACCTTGGAAACATGAAGCAAAGACATTCACTAGC
AAGAAAAGTCAATTTATAGTCTCCTGTTCCTTTAAAAGC
Done.