Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397574.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2437.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6389
ACGTcount: A:0.22, C:0.15, G:0.08, T:0.25

Warning! 1910 characters in sequence are not A, C, G, or T


Found at i:476 original size:18 final size:19

Alignment explanation


    Indices: 436--478  Score: 70
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        426 TTAATATTTT

                               
        436 AATATTATGTTATTTATAA
          1 AATATTATGTTATTTATAA

                    *          
        455 AATATTATTTTATTTA-AA
          1 AATATTATGTTATTTATAA

                  
        473 AATATT
          1 AATATT

        479 CTTTCTACCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  18    8  0.35
  19   15  0.65

ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53


Consensus pattern (19 bp):   
AATATTATGTTATTTATAA
Done.