Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400490.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3686.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2066
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.12

Warning! 1407 characters in sequence are not A, C, G, or T


Found at i:1018 original size:35 final size:35

Alignment explanation


    Indices: 972--1043  Score: 126
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        962 AATGCTTCTC

                                  *            
        972 AAGGCAGACACTTAATTATAGTCTATTTTAATGAA
          1 AAGGCAGACACTTAATTATAGTATATTTTAATGAA

                                    *          
       1007 AAGGCAGACACTTAATTATAGTATGTTTTAATGAA
          1 AAGGCAGACACTTAATTATAGTATATTTTAATGAA

              
       1042 AA
          1 AA

       1044 ATCTAAAATA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33


Consensus pattern (35 bp):   
AAGGCAGACACTTAATTATAGTATATTTTAATGAA
Done.