Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400491.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3687.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.20, C:0.07, G:0.08, T:0.18

Warning! 552 characters in sequence are not A, C, G, or T


Found at i:127 original size:19 final size:19

Alignment explanation


    Indices: 105--156  Score: 77
    Period size: 19  Copynumber: 2.7  Consensus size: 19

         95 ATCACTTTTG

                          *    
        105 GCATTTGGAATCAAGAGCA
          1 GCATTTGGAATCAAAAGCA

                               
        124 GCATTTGGAATCAAAAGCA
          1 GCATTTGGAATCAAAAGCA

            **            
        143 TTATTTGGAATCAA
          1 GCATTTGGAATCAA

        157 TTNNNNNNNN


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  19   30  1.00

ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27


Consensus pattern (19 bp):   
GCATTTGGAATCAAAAGCA

Found at i:471 original size:19 final size:19

Alignment explanation


    Indices: 447--485  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        437 TTTAGAGTTA

                               
        447 TATTATCAAATATTTGGTG
          1 TATTATCAAATATTTGGTG

                               
        466 TATTATCAAATATTTGGTG
          1 TATTATCAAATATTTGGTG

             
        485 T
          1 T

        486 TTGATTATTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49


Consensus pattern (19 bp):   
TATTATCAAATATTTGGTG
Done.